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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006099 ID=TCONS_00006099|Name=TCONS_00006099|organism=Clytia hemisphaerica|type=transcript|length=1053bp
GTTCAGATATTTGTTGCTGTCTGGATAAACGATTGAGCTCAGAAGATAGC
CTCTCGTTTTCTTTCTGGTACTTCTCCAGCTCATCTTTAGCCAGCTTGTA
TTTTCCTTTATAGCTTTCAGATTTCTTTTGCCATGTTTTCTTAGAGTCCC
GAAGTTTATTGCATTCTTTGGTTTTAGATGTAAGAGATTCGTCTTGCTTC
TCCAGATTCGATTTTTGATTGATGCATTCAGTTTTAAACGCATCCAGATC
TTTCGTCAACTGCTGtataattttctcttttttctccaAGGATCCAGAAA
TTTCTTTATACTTTAGTTTATACTTTGAAACCTTTGTTTTCATGGTGTCA
ATTTCACTTTGCATTGTCTTTTCGGTGTAAGCCAATTCCgacttttgagt
tttaagtgcTTTCAAATGACCTCGATTCTCATCTCTCAATCTCTGGCAAT
CTTTGGTCAAAGCATCTATCAATTTTTCGTAGCCTTGTCGGGAATCCTGA
GATTCCTTTTTCAATTGGCTATATTTTTCCATTATATTCTTGATCATTTT
CGGACATTCTGAATAATGTTGCTTCCAATCCATCTCTTTGTCATCAAaag
aatctttcaaatttttcaattcaacgATAAGTtcgttgttttcattttca
agaaattttaatttctttctaGAGACGTCGCTGTGGATGATCAATTCTTG
CTCTTTGATCACCTTTCTCAGTGTATTTTCATTCGCCAGAGATGCTTTCA
ACTGATTCTCTGCAATCCCCAATCTTTGTTGTTGACTATCCAACTGGTCA
GTCAATCTCTGGACATACGCTCCGTATTTCATAGCCAAATGATTCTGCTC
ACCCTGGTGGTTTGCCCTGCTTTCACTGAAAACTCTTTCCAGTAATTCAA
CTTCACACGACAAATTATCATTTTGACGAAGAGCTTCATCGGCACGAAAT
CGTTCCAATTTGCTGCATAAAAATAAATCTTTGTTATTTTGGTGAAGCTG
GTCTAACTTTGCGTCTAAGGCAGAATCGACTTTCGAAGCAATCTCCATGA
AAA Run BLAST on NCBI protein sequence of TCONS_00006099-protein >TCONS_00006099-protein ID=TCONS_00006099-protein|Name=TCONS_00006099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
FMEIASKVDSALDAKLDQLHQNNKDLFLCSKLERFRADEALRQNDNLSCE
VELLERVFSESRANHQGEQNHLAMKYGAYVQRLTDQLDSQQQRLGIAENQ
LKASLANENTLRKVIKEQELIIHSDVSRKKLKFLENENNELIVELKNLKD
SFDDKEMDWKQHYSECPKMIKNIMEKYSQLKKESQDSRQGYEKLIDALTK
DCQRLRDENRGHLKALKTQKSELAYTEKTMQSEIDTMKTKVSKYKLKYKE
ISGSLEKKEKIIQQLTKDLDAFKTECINQKSNLEKQDESLTSKTKECNKL
RDSKKTWQKKSESYKGKYKLAKDELEKYQKENERLSSELNRLSRQQQISE Run BLAST on NCBI transcript from alignment at sc0000062:290385..291437 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006099 ID=TCONS_00006099|Name=TCONS_00006099|organism=Clytia hemisphaerica|type=transcript|length=1053bp|location=Sequence derived from alignment at sc0000062:290385..291437 (Clytia hemisphaerica)
TTTTCATGGAGATTGCTTCGAAAGTCGATTCTGCCTTAGACGCAAAGTTA
GACCAGCTTCACCAAAATAACAAAGATTTATTTTTATGCAGCAAATTGGA
ACGATTTCGTGCCGATGAAGCTCTTCGTCAAAATGATAATTTGTCGTGTG
AAGTTGAATTACTGGAAAGAGTTTTCAGTGAAAGCAGGGCAAACCACCAG
GGTGAGCAGAATCATTTGGCTATGAAATACGGAGCGTATGTCCAGAGATT
GACTGACCAGTTGGATAGTCAACAACAAAGATTGGGGATTGCAGAGAATC
AGTTGAAAGCATCTCTGGCGAATGAAAATACACTGAGAAAGGTGATCAAA
GAGCAAGAATTGATCATCCACAGCGACGTCTCtagaaagaaattaaaatt
tcttgaaaatgaaaacaacgaACTTATcgttgaattgaaaaatttgaaag
attcttTTGATGACAAAGAGATGGATTGGAAGCAACATTATTCAGAATGT
CCGAAAATGATCAAGAATATAATGGAAAAATATAGCCAATTGAAAAAGGA
ATCTCAGGATTCCCGACAAGGCTACGAAAAATTGATAGATGCTTTGACCA
AAGATTGCCAGAGATTGAGAGATGAGAATCGAGGTCATTTGAAAgcactt
aaaactcaaaagtcGGAATTGGCTTACACCGAAAAGACAATGCAAAGTGA
AATTGACACCATGAAAACAAAGGTTTCAAAGTATAAACTAAAGTATAAAG
AAATTTCTGGATCCTtggagaaaaaagagaaaattataCAGCAGTTGACG
AAAGATCTGGATGCGTTTAAAACTGAATGCATCAATCAAAAATCGAATCT
GGAGAAGCAAGACGAATCTCTTACATCTAAAACCAAAGAATGCAATAAAC
TTCGGGACTCTAAGAAAACATGGCAAAAGAAATCTGAAAGCTATAAAGGA
AAATACAAGCTGGCTAAAGATGAGCTGGAGAAGTACCAGAAAGAAAACGA
GAGGCTATCTTCTGAGCTCAATCGTTTATCCAGACAGCAACAAATATCTG
AAC Coding sequence (CDS) from alignment at sc0000062:290385..291437 >TCONS_00006099 ID=TCONS_00006099|Name=TCONS_00006099|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000062:290385..291437 (Clytia hemisphaerica)
TTCATGGAGATTGCTTCGAAAGTCGATTCTGCCTTAGACGCAAAGTTAGA
CCAGCTTCACCAAAATAACAAAGATTTATTTTTATGCAGCAAATTGGAAC
GATTTCGTGCCGATGAAGCTCTTCGTCAAAATGATAATTTGTCGTGTGAA
GTTGAATTACTGGAAAGAGTTTTCAGTGAAAGCAGGGCAAACCACCAGGG
TGAGCAGAATCATTTGGCTATGAAATACGGAGCGTATGTCCAGAGATTGA
CTGACCAGTTGGATAGTCAACAACAAAGATTGGGGATTGCAGAGAATCAG
TTGAAAGCATCTCTGGCGAATGAAAATACACTGAGAAAGGTGATCAAAGA
GCAAGAATTGATCATCCACAGCGACGTCTCtagaaagaaattaaaatttc
ttgaaaatgaaaacaacgaACTTATcgttgaattgaaaaatttgaaagat
tcttTTGATGACAAAGAGATGGATTGGAAGCAACATTATTCAGAATGTCC
GAAAATGATCAAGAATATAATGGAAAAATATAGCCAATTGAAAAAGGAAT
CTCAGGATTCCCGACAAGGCTACGAAAAATTGATAGATGCTTTGACCAAA
GATTGCCAGAGATTGAGAGATGAGAATCGAGGTCATTTGAAAgcacttaa
aactcaaaagtcGGAATTGGCTTACACCGAAAAGACAATGCAAAGTGAAA
TTGACACCATGAAAACAAAGGTTTCAAAGTATAAACTAAAGTATAAAGAA
ATTTCTGGATCCTtggagaaaaaagagaaaattataCAGCAGTTGACGAA
AGATCTGGATGCGTTTAAAACTGAATGCATCAATCAAAAATCGAATCTGG
AGAAGCAAGACGAATCTCTTACATCTAAAACCAAAGAATGCAATAAACTT
CGGGACTCTAAGAAAACATGGCAAAAGAAATCTGAAAGCTATAAAGGAAA
ATACAAGCTGGCTAAAGATGAGCTGGAGAAGTACCAGAAAGAAAACGAGA
GGCTATCTTCTGAGCTCAATCGTTTATCCAGACAGCAACAAATATCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006099-exon-sc0000062-1491911889:290385..291437 | TCONS_00006099-exon-sc0000062-1491911889:290385..291437 | Clytia hemisphaerica | exon |
| TCONS_00006099-exon-sc0000062-1510915933:290385..291437 | TCONS_00006099-exon-sc0000062-1510915933:290385..291437 | Clytia hemisphaerica | exon |
| TCONS_00006099-exon-sc0000062-1575043694:290385..291437 | TCONS_00006099-exon-sc0000062-1575043694:290385..291437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000062 | supercontig | sc0000062:290385..291437 . |
Blast
The following BLAST results are available for this feature:
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