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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006136 ID=TCONS_00006136|Name=TCONS_00006136|organism=Clytia hemisphaerica|type=transcript|length=1335bp
ATTTACTTCTGCCAAGTATAATACACTTGAAGCTTTGTACGGGTATTACT
TATTTTACCCAGTTGAATATATTACAGTTTATAGCTCACTTTAATCGAAG
AGTTCCTTCACTTTGCAAATCTCAATTTTCAGTAGACTTCAGCCATTCAA
GATGGGAAAGTTGGTTGCATTCATaacacttttattttttgtaacaaTAT
CTTTTTCTGCTCCAATAGAAGACCAAATAGTTGGACCACAAGAAGACGAG
AACCACGTGATAATGAAAAGATTCGCTTGTGCAAATGTAATCAATTTTAT
TTGCACCGATTATTGGGCGATTGGATGTAACTATAATCCATTCATTCTAT
CCAAATGCAGTATTATTTGCAAAATATGTCGAGAACAACGACCgaacgat
ttttgaaaaatgaaaactgtaacgatttgtttaaaatttattatacTAAA
Tccagctggcacgcaacgttttttcaacgttcatctaacgttaaatggac
gttgtgaacgttagataaacgttgaaacaacgttgtgtgacaGCTGGGAA
TAGATTATACTGGAGAAGAAAGAGGTTTTTTTAGCACACGTTTCTCCTTA
AAGCACAAAGTTgtgtattttcctatttttgtaAGTTtatttatacaccc
ctgtctcacagccccggtgtaACTTTTTTTCCTCAGGGGGTATAAAACTT
CCCAGTGGGAATAGAAATCCTgatggtacacgtttttttataagaacaaa
ctatatataagaacataaggctttgatggccgaaatactaagaacaagct
aagaacattttaaggctttgccgactcagataaatgaagaaaaatactca
aaaaatggtgaaaacaaaaacatggttataacatttttaggcttaaaact
caaaaagttaagaacattccaaggctTCAAAATATTTGGATGCTCTTACA
AAAAAGCGTTTTTAGAGGTTAAAAGATGCAGTATGGATGGTTTGGGActg
tattttttaaacattgaatttcgagttgggatgaaattaaagtcaaaatt
tggagAGGATTTTAACGACGACGTCaaagaatttttacaaaaacttaAGC
TCTTGTTGAATTTCTTCCAACTCGAAGATGATCAAAAGGCAAAGCTAGTT
TTATAAGGAAGGACATacactttctttgtttcacTCCCAGATGCAACAAG
ATTGCGCCCTGTTAACGAATGCCTTAACGGAAGAGTTCAACCCTGTCCAA
CTCCAATACAGGAAACGAGAGGAGCTATATAGTGTCCAACAAAAGGGAGA
GCCGATTGCAGTTTATCTCGCGAACGTCGAGAAAC Run BLAST on NCBI transcript from alignment at sc0000063:437358..439533+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006136 ID=TCONS_00006136|Name=TCONS_00006136|organism=Clytia hemisphaerica|type=transcript|length=2176bp|location=Sequence derived from alignment at sc0000063:437358..439533+ (Clytia hemisphaerica)
ATTTACTTCTGCCAAGTATAATACACTTGAAGCTTTGTACGGGTATTACT
TATTTTACCCAGTTGAATATATTACAGTTTATAGCTCACTTTAATCGAAG
AGTTCCTTCACTTTGCAAATCTCAATTTTCAGTAGACTTCAGCCATTCAA
GATGGGAAAGTTGGTTGCATTCATaacacttttattttttgtaacaaTAT
CTTTTTCTGCTCCAATAGAAGACCAAATAGTTGGTAAGATTTTTTCCAAT
TCGTTTGAGTTGGTTTAATGTTAAGGTTGTATCCcgaaggggggggggca
aaactACTGGCAAAGGAAATCTAGCGAGGCAGtaagtgaaagaaaaatgt
tGGTCAAAAATGACCATCTCCGCTTTAAGGCCGTTATATGGATTGTGACG
TTACATGGACGTTGACGTCTTGATAGAGGAGTGTACAGGTTTGGCGGAGT
GACGGTATTAGCTCTTTTTTCCGTCGGTGTTtcgcaaagaaaaaaaagag
ttttgTTTTTGCTATCGTGCTAATGGTGATCAAAAAAGATGTATCAGTAT
TTCGAAGTTCGCGACCCACGTACTGTCTTCTCTTGATAGAGGTACTTCTT
TTTATGAAAGAAAATATAAGAAAGATTTTACCACCCTCCCGCCCTACAGA
TATTGGTTGCCGACAACCTTATTTCTAGTTTATGTTAGTTTATCACTAGC
TTGGGGactaattttccccaaaactgatTATGGGTTAGCCAAATATTTCA
ATGCCAAACCTTAAACGCATTTGTCTCGATCTACTCTGCTTCTCCATACC
CAGTTGTACGATTCGGAaattattcatagaattatgtttcacaggtctat
cgaccgcTACGAAATAATTtcagatttataaaatattatgtctaatcttc
atctgtcgtccagtcttcagaagatatggacagagaagacgttgttttgg
tctttcTTTTTCGAACTAGGTGAAGGTTattgttctagggcttcctctta
catgccaaatGAAATCACGATTTTCTAAATTCATTTTCATTAAacaggat
tttttatttttgcttttaatttAGGACCACAAGAAGACGAGAACCACGTG
ATAATGAAAAGATTCGCTTGTGCAAATGTAATCAATTTTATTTGCACCGA
TTATTGGGCGATTGGATGTAACTATAATCCATTCATTCTATCCAAATGCA
GTATTATTTGCAAAATATGTCGAGAACAACGACCgaacgatttttgaaaa
atgaaaactgtaacgatttgtttaaaatttattatacTAAATccagctgg
cacgcaacgttttttcaacgttcatctaacgttaaatggacgttgtgaac
gttagataaacgttgaaacaacgttgtgtgacaGCTGGGAATAGATTATA
CTGGAGAAGAAAGAGGTTTTTTTAGCACACGTTTCTCCTTAAAGCACAAA
GTTgtgtattttcctatttttgtaAGTTtatttatacacccctgtctcac
agccccggtgtaACTTTTTTTCCTCAGGGGGTATAAAACTTCCCAGTGGG
AATAGAAATCCTgatggtacacgtttttttataagaacaaactatatata
agaacataaggctttgatggccgaaatactaagaacaagctaagaacatt
ttaaggctttgccgactcagataaatgaagaaaaatactcaaaaaatggt
gaaaacaaaaacatggttataacatttttaggcttaaaactcaaaaagtt
aagaacattccaaggctTCAAAATATTTGGATGCTCTTACAAAAAAGCGT
TTTTAGAGGTTAAAAGATGCAGTATGGATGGTTTGGGActgtatttttta
aacattgaatttcgagttgggatgaaattaaagtcaaaatttggagAGGA
TTTTAACGACGACGTCaaagaatttttacaaaaacttaAGCTCTTGTTGA
ATTTCTTCCAACTCGAAGATGATCAAAAGGCAAAGCTAGTTTTATAAGGA
AGGACATacactttctttgtttcacTCCCAGATGCAACAAGATTGCGCCC
TGTTAACGAATGCCTTAACGGAAGAGTTCAACCCTGTCCAACTCCAATAC
AGGAAACGAGAGGAGCTATATAGTGTCCAACAAAAGGGAGAGCCGATTGC
AGTTTATCTCGCGAACGTCGAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006136-exon-sc0000063-1491911889:437358..437590 | TCONS_00006136-exon-sc0000063-1491911889:437358..437590 | Clytia hemisphaerica | exon |
| TCONS_00006136-exon-sc0000063-1510915933:437358..437590 | TCONS_00006136-exon-sc0000063-1510915933:437358..437590 | Clytia hemisphaerica | exon |
| TCONS_00006136-exon-sc0000063-1575043694:437358..437590 | TCONS_00006136-exon-sc0000063-1575043694:437358..437590 | Clytia hemisphaerica | exon |
| TCONS_00006136-exon-sc0000063-1491911889:438432..439533 | TCONS_00006136-exon-sc0000063-1491911889:438432..439533 | Clytia hemisphaerica | exon |
| TCONS_00006136-exon-sc0000063-1510915933:438432..439533 | TCONS_00006136-exon-sc0000063-1510915933:438432..439533 | Clytia hemisphaerica | exon |
| TCONS_00006136-exon-sc0000063-1575043694:438432..439533 | TCONS_00006136-exon-sc0000063-1575043694:438432..439533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:437358..439533 + |
Blast
The following BLAST results are available for this feature:
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