TCONS_00006163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006163
Unique NameTCONS_00006163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006163 ID=TCONS_00006163|Name=TCONS_00006163|organism=Clytia hemisphaerica|type=transcript|length=2127bp
aaaaaatttctttctttttttgcttcGGTGTCATTTCGAACAAGTCGTAG
AGaaatttattcTATACGGAAAAGAATggacaaatttcaaatttctcttA
TTGCACTTGTCCTGACGACTCTATCAATCCACACAGCAAACGGTCAATTG
GCAGAATGTTGGAAATGTACTGGTAGTGAGGACTGCGGTGATCGAGATTT
TTGTCTCGCTGAGCATGATCGGTGCTTGAAACTGAAATACGAACATGACG
GTGGTTTCGTGAATGATGCTAAATGCTCCAAACGAACTGAATGCGATACA
GTAAGTGGCAAAATGCTGTTATGTGACAAGAAGAAGAAGTGCGAGATTAC
CGCTTGCTGCAAGGACGATTTGTGTAACTCACCTGCCGTCACAACCAAAT
TCAATGCCAGCCTTTTGGCTCTTGTTGTCATGGCTACATTTTATGTTCTT
TTTGGACGATAATTCATATATTTCACTATTGTCATATTTAAACACGATTT
ATGTCGCTAAATGAAGTAtgagcccgaagggctagaattgaATCTTTTaa
aacctttctcaggcaaaaaataaaagtgaagCTTTAAAATATGCACCGTG
TTTTTGGTGACGaattgaatctagcgattctTTTATTTTCGAGTCAtgtc
tttttcgaaatttagttgtagattttagtttcaatctgtcatttgtgtaa
aaaccaggtggACGCGCTAAGCCACGCAACTTTGATAGGATTtggttggc
ttcaaatcctaccaagaagATTCTCTTATAGCCTTTCGGGCTTCTACTTC
ATTGGCTAAAACCTTTGAGGTATAATGCCTTTTCGCACTTGTATGTCAAA
TTTCACTGTTGTCCTTACAAAAAATCGCCTATGCTgtttttgggaatttc
cccgacattgggacattccattttatatttaTACAAGGTGACGAACATGA
GGGTAATCGGAGAAAAATCTCTCAAGGGATATATAGAGAAGTATTTTCTC
ATCTTCCAGGTGGGAAGaaggttattctaaaatttctaaggggtaaaaga
ccaattttagttCGTTCGTCCTTACTTATAAGGTATGAtaataatttttc
caagggcTCTTTTGCAAATGTttccattttcaaggggaataTAAATAATA
AGTTATTTCTAATATTtgtaatctatatattaatacgctaaaacgtgtgt
gtttacaacgttttgtaaaagttttggaaaatctaacaaagctctacaaa
gcctcctcttcatggcgttgaaccatcatctttttgcaccttatacagat
ttcctaccactagactaactttgagaccccaagatactattGTCTATACA
GGATGTGTGGAGctggattttatttttcattttgaagagtTATTATTCAG
ACGCTCTTTAAAACGTTCTGTTTGCGGCTCCCTatcaatttcaaagtttt
gaaagtctttcaaagtctttcaaaatctttctcGAATGTCCAACCCCGAT
GGCTAGCTACGATGGCTAAGTAAGAAgatctaaaatataatttttctaag
ccatttactcttaggtgccaaataaacggccccccccgcttgttaatttt
tcgaaaattttccaacccccccggaccttattaggaccccccccccgttt
attaattttaaagaatattttcagttggctaaaagcagtccccttatttt
gctccaaaaagcctgattttagcctatatttaccttatttttgggttttc
ataagtacaatttccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgaaaatctaacaaagctctacaaagcctcctcttcatgg
cgttgaaccatcatctttttgcaccttatgcagatttcctaccactagac
taactttgagaccttAAGATACTATTGTCTATACAGGACGTGTGGAGctg
gatgggttaaaatcaactttcttcccaaattttatttttcattttgaaga
gttattgcaatgcaatgttatcttttttctcctttcctGAAATCTAAATC
GTATCATCAATCGGCCTCTATTTTTCTTCCGTTAGAGTTTTTTTAGATGT
GTGGTGATTCACTGTATTGGGATACGC
Run BLAST on NCBI

protein sequence of TCONS_00006163-protein

>TCONS_00006163-protein ID=TCONS_00006163-protein|Name=TCONS_00006163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
KKFLSFFASVSFRTSRREIYSIRKRMDKFQISLIALVLTTLSIHTANGQL
AECWKCTGSEDCGDRDFCLAEHDRCLKLKYEHDGGFVNDAKCSKRTECDT
VSGKMLLCDKKKKCEITACCKDDLCNSPAVTTKFNASLLALVVMATFYVL
FGR
Run BLAST on NCBI

transcript from alignment at sc0000063:441000..445071-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006163 ID=TCONS_00006163|Name=TCONS_00006163|organism=Clytia hemisphaerica|type=transcript|length=4072bp|location=Sequence derived from alignment at sc0000063:441000..445071- (Clytia hemisphaerica)
AAAAAATTTCTTTCTTTTTTTGCTTCGGTGTCATTTCGAACAAGTCGTAG
AGGTACATTGATTTTTTTTTGTACTTTTCAATTAAATCTTCAAGATTTAC
AGAAAAGTTCTTTTAGTTATAATTCAATAATTTTGAAATCGAAAATTTTG
CTTGTATTTTTGAGAAAACATTAATCGAATAAAATATCTAATGCTTAATA
TGCATAAGTCAAGATAACGTCATATTTTTTAACAGAAGTACCCAAAAAAA
GCCAGATTTTGACCTCTGTTTTTCTATTTTAAGTAACAGAGAGGGGTCAA
ATCCCGGATTTTTTCGGGTATTTCCGCTAGAAAAATGACTTACGCATATC
AAGAATCAGATTTAATCAAAATTAAACATCCTGTCTTATTTTATTTCTTT
TAGAAATTTATTCTATACGGAAAAGAATGGACAAATTTCAAATTTCTCTT
ATTGCACTTGTCCTGACGACTCTATCAATCCACACAGGTTTGTAATTTTT
GGTTTCCCAGCTGGCACACAACATTCTTTTAACGTTTATCTAACGTTCAC
AACGTCCATATAACGTTAGATGGACGTTGAGACAACGTTGTGTGCCAGCT
GGGTTGTCAAAGAATTTAAATTCAAGTCTTAGTAGTGCCTTAAGGAAACT
AATTTTGATGAACAGAAAAAAAGCAAAGTCTAAAATAATTATTTCGGAGC
AAGATCTAATTTTTGCCAATGACAGCAGGATCAATTGATTTTTTTTTAAT
ATGAGTGTTAAACGATAAGTAAGGGGGCCCCCAGCGATTGCGTGATTTCG
TGAATGGGCTTTTTCACTTGCGTGAATGCGTGAATATTAACAAAAAATTG
CGTGAATTGGAAAGCTTATTGCGAGAATATTGTAAAAACATTGCGTGAGT
GCGTGAATTTAGGAGAACAATTTGCGTGATTACTTGAATTAAAGGTCCAC
TGGCGGGGGCCTCAGTAAGCAAATGGTATCATTCTTATTTGAAAACGTAA
CCTGTAAAATACGATTTAATTAATTTAACAGCAAACGGTCAATTGGCAGA
ATGTTGGAAATGTACTGGTAGTGAGGACTGCGGTGATCGAGATTTTTGTC
TCGCTGAGCATGATCGGTGCTTGAAACTGAAATACGAGTAAGTCTTTTTG
TCTCACTGAGCATGAGCATGATCGGTGCTTAAAACTGAAATACGAGTAAG
TCTTTTTGTCTCGCTGAGCACGATTTCCTCGTCCTTCATGGCAGCCTTCA
TTAAATCAATTTCTAGCTTTTCTCCTAAAAACTGCTGAATTTTCACAGTC
TTGTAGCGTAATTAAAAGTTTTTTTCAGGAGAAAATAAAAGAATGTTGCG
GCCGACCGGAAAAATATTTCTTTTGCTATTTTTAACGAACAAAACTTCAT
TTACAAGCGGGATTATCTAACCAAACGACGTTTGATAGCTTGAACGGTCA
AATTGATTTCTTTATGATGAAACATATAGATGAACCCATAGTCTGCGGCC
GGGTCTTTTTTCAGCCGGCTGGTTTTCGGAAACTTTACATTTTTTTTAAA
CTGTCATATTCTTTTTCAGACATGACGGTGGTTTCGTGAATGATGCTAAA
TGCTCCAAACGAACTGAATGCGATACAGTAAGTGGCAAAATGCTGTTATG
TGACAAGAAGAAGAAGTGCGAGGTAAGGTTACTACACGTTTTTTTTTAAG
AGACTAGTTTTACCAAGCAGCCTCAATGTTTCTTAAGAAATCGGCCTTTG
AGCCTTAAATGTTTCTTACTTTTTGACATCATCAGCCTATTTTCATGCAA
AGAACAAAAACATTTGCTTTGATTGGAAGGAATCAAACTGAATCAAAAAT
GTTATTTTCAGTTAAAAAAAACTCTGTCTTCAAATTACCCCCCTCTTATT
TCATCTCTCCTGCTTATTAGAATTTAGAAAATTTTCCTACACTCCTGCTT
ATTCGGACCCCCCCCCCCCTTTTTTTTTGGCCCCCCCCCCCGTCTATTCG
GGAGACAAGAGTAGTTGTTTCTTAGTTTGTAGGCATTATGAGCCTCCTAT
TTCTTAAAAGTGTGTTTCTTATAAAAAGAAACGTGTATTTTAGGATCATT
ACAGTGTGTCCCTAAAAAAGCGGACAAATTCTAACAAAAAAGTGAAATTA
ATAATTATATCAATATTTTTTGCGAAATTTTATGACTTTATACTCAATAT
TTGGATCTCATTCAATTAAAAAATAAGTTTCAGCCGGATCACTGAGACAG
GGGCGTTTAATAAAATGTCTAACATGTTTTCTCACAATAGATTACCGCTT
GCTGCAAGGACGATTTGTGTAACTCACCTGCCGTCACAACCAAATTCAAT
GCCAGCCTTTTGGCTCTTGTTGTCATGGCTACATTTTATGTTCTTTTTGG
ACGATAATTCATATATTTCACTATTGTCATATTTAAACACGATTTATGTC
GCTAAATGAAGTATGAGCCCGAAGGGCTAGAATTGAATCTTTTAAAACCT
TTCTCAGGCAAAAAATAAAAGTGAAGCTTTAAAATATGCACCGTGTTTTT
GGTGACGAATTGAATCTAGCGATTCTTTTATTTTCGAGTCATGTCTTTTT
CGAAATTTAGTTGTAGATTTTAGTTTCAATCTGTCATTTGTGTAAAAACC
AGGTGGACGCGCTAAGCCACGCAACTTTGATAGGATTTGGTTGGCTTCAA
ATCCTACCAAGAAGATTCTCTTATAGCCTTTCGGGCTTCTACTTCATTGG
CTAAAACCTTTGAGGTATAATGCCTTTTCGCACTTGTATGTCAAATTTCA
CTGTTGTCCTTACAAAAAATCGCCTATGCTGTTTTTGGGAATTTCCCCGA
CATTGGGACATTCCATTTTATATTTATACAAGGTGACGAACATGAGGGTA
ATCGGAGAAAAATCTCTCAAGGGATATATAGAGAAGTATTTTCTCATCTT
CCAGGTGGGAAGAAGGTTATTCTAAAATTTCTAAGGGGTAAAAGACCAAT
TTTAGTTCGTTCGTCCTTACTTATAAGGTATGATAATAATTTTTCCAAGG
GCTCTTTTGCAAATGTTTCCATTTTCAAGGGGAATATAAATAATAAGTTA
TTTCTAATATTTGTAATCTATATATTAATACGCTAAAACGTGTGTGTTTA
CAACGTTTTGTAAAAGTTTTGGAAAATCTAACAAAGCTCTACAAAGCCTC
CTCTTCATGGCGTTGAACCATCATCTTTTTGCACCTTATACAGATTTCCT
ACCACTAGACTAACTTTGAGACCCCAAGATACTATTGTCTATACAGGATG
TGTGGAGCTGGATTTTATTTTTCATTTTGAAGAGTTATTATTCAGACGCT
CTTTAAAACGTTCTGTTTGCGGCTCCCTATCAATTTCAAAGTTTTGAAAG
TCTTTCAAAGTCTTTCAAAATCTTTCTCGAATGTCCAACCCCGATGGCTA
GCTACGATGGCTAAGTAAGAAGATCTAAAATATAATTTTTCTAAGCCATT
TACTCTTAGGTGCCAAATAAACGGCCCCCCCCGCTTGTTAATTTTTCGAA
AATTTTCCAACCCCCCCGGACCTTATTAGGACCCCCCCCCCGTTTATTAA
TTTTAAAGAATATTTTCAGTTGGCTAAAAGCAGTCCCCTTATTTTGCTCC
AAAAAGCCTGATTTTAGCCTATATTTACCTTATTTTTGGGTTTTCATAAG
TACAATTTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGAAAATCTAACAAAGCTCTACAAAGCCTCCTCTTCATGGCGTTG
AACCATCATCTTTTTGCACCTTATGCAGATTTCCTACCACTAGACTAACT
TTGAGACCTTAAGATACTATTGTCTATACAGGACGTGTGGAGCTGGATGG
GTTAAAATCAACTTTCTTCCCAAATTTTATTTTTCATTTTGAAGAGTTAT
TGCAATGCAATGTTATCTTTTTTCTCCTTTCCTGAAATCTAAATCGTATC
ATCAATCGGCCTCTATTTTTCTTCCGTTAGAGTTTTTTTAGATGTGTGGT
GATTCACTGTATTGGGATACGC

Coding sequence (CDS) from alignment at sc0000063:441000..445071-

>TCONS_00006163 ID=TCONS_00006163|Name=TCONS_00006163|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000063:441000..445071- (Clytia hemisphaerica)
AAAAAATTTCTTTCTTTTTTTGCTTCGGTGTCATTTCGAACAAGTCGTAG
AGAAATTTATTCTATACGGAAAAGAATGGACAAATTTCAAATTTCTCTTA
TTGCACTTGTCCTGACGACTCTATCAATCCACACAGCAAACGGTCAATTG
GCAGAATGTTGGAAATGTACTGGTAGTGAGGACTGCGGTGATCGAGATTT
TTGTCTCGCTGAGCATGATCGGTGCTTGAAACTGAAATACGAACATGACG
GTGGTTTCGTGAATGATGCTAAATGCTCCAAACGAACTGAATGCGATACA
GTAAGTGGCAAAATGCTGTTATGTGACAAGAAGAAGAAGTGCGAGATTAC
CGCTTGCTGCAAGGACGATTTGTGTAACTCACCTGCCGTCACAACCAAAT
TCAATGCCAGCCTTTTGGCTCTTGTTGTCATGGCTACATTTTATGTTCTT
TTTGGACGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003513XLOC_003513Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006163-proteinTCONS_00006163-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006163-exon-sc0000063-1575043694:445020..445071TCONS_00006163-exon-sc0000063-1575043694:445020..445071Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1575043694:444585..444668TCONS_00006163-exon-sc0000063-1575043694:444585..444668Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1575043694:443935..444040TCONS_00006163-exon-sc0000063-1575043694:443935..444040Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1575043694:443400..443502TCONS_00006163-exon-sc0000063-1575043694:443400..443502Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1575043694:441000..442781TCONS_00006163-exon-sc0000063-1575043694:441000..442781Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1510915933:445020..445071TCONS_00006163-exon-sc0000063-1510915933:445020..445071Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1510915933:444585..444668TCONS_00006163-exon-sc0000063-1510915933:444585..444668Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1510915933:443935..444040TCONS_00006163-exon-sc0000063-1510915933:443935..444040Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1510915933:443400..443502TCONS_00006163-exon-sc0000063-1510915933:443400..443502Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1510915933:441000..442781TCONS_00006163-exon-sc0000063-1510915933:441000..442781Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1491911889:445020..445071TCONS_00006163-exon-sc0000063-1491911889:445020..445071Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1491911889:444585..444668TCONS_00006163-exon-sc0000063-1491911889:444585..444668Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1491911889:443935..444040TCONS_00006163-exon-sc0000063-1491911889:443935..444040Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1491911889:443400..443502TCONS_00006163-exon-sc0000063-1491911889:443400..443502Clytia hemisphaericaexon
TCONS_00006163-exon-sc0000063-1491911889:441000..442781TCONS_00006163-exon-sc0000063-1491911889:441000..442781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:441000..445071 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.516261	0.279878	0.700659	1.45716	2.3261	1.47503	2.15037	2.46709	2.45346	2.94608	2.38252	3.99313	18.0295	18.2788	4.52958	3.81747	2.00651	2.87516	29.0882	36.8146	10.2646	9.82463	2.9998	6.71256	4.72935	7.49284	1.5452	1.14739	0.652271	0.95116
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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