TCONS_00006178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006178
Unique NameTCONS_00006178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006178 ID=TCONS_00006178|Name=TCONS_00006178|organism=Clytia hemisphaerica|type=transcript|length=551bp
GAGGTTGATTCATTTGTAAAAATATCTTTCTATAAAATCAAATATCACAA
AGTTTGTATGCCgtaagaaataataaaaaataactaCAGTATTTACAAGT
AAAATATAAACCCTTTTATAGAAAATAATACCGGGTAAAAACAAAATCTA
CGATAAGGTAagtatttgaaatttaaaatcaaaattttttgtttagtcAA
TAGTCCTGAGAGTACTGTTTATTTGTTGTTATTTGAGTTTTTATTCTtat
tatttgttcttttcttcttATTCTTGGGGAGAACGGTATCATCTGCAACA
AAACTATATTCCTCCCTCTGTCGATCACGCGTGTTTCCCCGCATCGCCAA
GACAGACTCTGATTTTGCAACAACCATTTTTCGTGCAGTGTACATGAATA
TTTCCATGCTTGGATTATCGAGACCTCCACATCGGGCTCGCTGCTTGGAA
AAATACTCCTCAACGGGGTCTTGGTTAAGCTTATCCGAAAGAAAGTACTT
CACTCCATTCATGCTCACAAGCTTTGGAACCAGTTCAATAAACGATCGAa
c
Run BLAST on NCBI

protein sequence of TCONS_00006178-protein

>TCONS_00006178-protein ID=TCONS_00006178-protein|Name=TCONS_00006178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
VRSFIELVPKLVSMNGVKYFLSDKLNQDPVEEYFSKQRARCGGLDNPSME
IFMYTARKMVVAKSESVLAMRGNTRDRQREEYSFVADDTVLPKNKKKRTN
NKNKNSNNNK
Run BLAST on NCBI

transcript from alignment at sc0000063:43829..44379

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006178 ID=TCONS_00006178|Name=TCONS_00006178|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0000063:43829..44379 (Clytia hemisphaerica)
gtTCGATCGTTTATTGAACTGGTTCCAAAGCTTGTGAGCATGAATGGAGT
GAAGTACTTTCTTTCGGATAAGCTTAACCAAGACCCCGTTGAGGAGTATT
TTTCCAAGCAGCGAGCCCGATGTGGAGGTCTCGATAATCCAAGCATGGAA
ATATTCATGTACACTGCACGAAAAATGGTTGTTGCAAAATCAGAGTCTGT
CTTGGCGATGCGGGGAAACACGCGTGATCGACAGAGGGAGGAATATAGTT
TTGTTGCAGATGATACCGTTCTCCCCAAGAATaagaagaaaagaacaaat
aataAGAATAAAAACTCAAATAACAACAAATAAACAGTACTCTCAGGACT
ATTgactaaacaaaaaattttgattttaaatttcaaatactTACCTTATC
GTAGATTTTGTTTTTACCCGGTATTATTTTCTATAAAAGGGTTTATATTT
TACTTGTAAATACTGtagttattttttattatttcttacGGCATACAAAC
TTTGTGATATTTGATTTTATAGAAAGATATTTTTACAAATGAATCAACCT
C

Coding sequence (CDS) from alignment at sc0000063:43829..44379

>TCONS_00006178 ID=TCONS_00006178|Name=TCONS_00006178|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000063:43829..44379 (Clytia hemisphaerica)
gtTCGATCGTTTATTGAACTGGTTCCAAAGCTTGTGAGCATGAATGGAGT
GAAGTACTTTCTTTCGGATAAGCTTAACCAAGACCCCGTTGAGGAGTATT
TTTCCAAGCAGCGAGCCCGATGTGGAGGTCTCGATAATCCAAGCATGGAA
ATATTCATGTACACTGCACGAAAAATGGTTGTTGCAAAATCAGAGTCTGT
CTTGGCGATGCGGGGAAACACGCGTGATCGACAGAGGGAGGAATATAGTT
TTGTTGCAGATGATACCGTTCTCCCCAAGAATaagaagaaaagaacaaat
aataAGAATAAAAACTCAAATAACAACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003524XLOC_003524Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006178-exon-sc0000063-1491911889:43829..44379TCONS_00006178-exon-sc0000063-1491911889:43829..44379Clytia hemisphaericaexon
TCONS_00006178-exon-sc0000063-1510915933:43829..44379TCONS_00006178-exon-sc0000063-1510915933:43829..44379Clytia hemisphaericaexon
TCONS_00006178-exon-sc0000063-1575043694:43829..44379TCONS_00006178-exon-sc0000063-1575043694:43829..44379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006178-proteinTCONS_00006178-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:43829..44379 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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