TCONS_00006183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006183
Unique NameTCONS_00006183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006183 ID=TCONS_00006183|Name=TCONS_00006183|organism=Clytia hemisphaerica|type=transcript|length=477bp
CCTCCAGCAGGGTGCATTGAAACAAAATGGGGCGAGAATGTCTCGTTTGT
GTTCAATTCAGTTGATTGTAGCCATTGTTCAATATCACTTGCAATATCAA
CATTGGGATCTGATGTATCTTGGTCCAATATGGATTTGACAATATCATAA
TGAGATTTGGAAAAGTACAACGCATGTGTGTGAATGGCACCCCGACTCTT
TGCAAACTCATATCTGCTCCAATCATCTTCatattgaaaaagacttttta
aaaCCGTGTCTTTATAATTCAAATGTCTTGCATTAAAGTAAGTCGTAATG
ATATGCTGATTTTGTAAAATAACTTGATGGCGAAATTGTGCATCTGTTTG
AAATCTTTCTTTGATGGTGTGAATATTGTCGCTTGATGTCTTTGCAAGAT
ATTTGATGATAACATCATGAAGTGGTACCCAGTGGTGTTCAGCACAGGAT
GAAGTATCAAAATAGGATGGATATACG
Run BLAST on NCBI

protein sequence of TCONS_00006183-protein

>TCONS_00006183-protein ID=TCONS_00006183-protein|Name=TCONS_00006183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
VYPSYFDTSSCAEHHWVPLHDVIIKYLAKTSSDNIHTIKERFQTDAQFRH
QVILQNQHIITTYFNARHLNYKDTVLKSLFQYEDDWSRYEFAKSRGAIHT
HALYFSKSHYDIVKSILDQDTSDPNVDIASDIEQWLQSTELNTNETFSPH
FVSMHPAG
Run BLAST on NCBI

transcript from alignment at sc0000063:76199..76675

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006183 ID=TCONS_00006183|Name=TCONS_00006183|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0000063:76199..76675 (Clytia hemisphaerica)
CGTATATCCATCCTATTTTGATACTTCATCCTGTGCTGAACACCACTGGG
TACCACTTCATGATGTTATCATCAAATATCTTGCAAAGACATCAAGCGAC
AATATTCACACCATCAAAGAAAGATTTCAAACAGATGCACAATTTCGCCA
TCAAGTTATTTTACAAAATCAGCATATCATTACGACTTACTTTAATGCAA
GACATTTGAATTATAAAGACACGGttttaaaaagtctttttcaatatGAA
GATGATTGGAGCAGATATGAGTTTGCAAAGAGTCGGGGTGCCATTCACAC
ACATGCGTTGTACTTTTCCAAATCTCATTATGATATTGTCAAATCCATAT
TGGACCAAGATACATCAGATCCCAATGTTGATATTGCAAGTGATATTGAA
CAATGGCTACAATCAACTGAATTGAACACAAACGAGACATTCTCGCCCCA
TTTTGTTTCAATGCACCCTGCTGGAGG

Coding sequence (CDS) from alignment at sc0000063:76199..76675

>TCONS_00006183 ID=TCONS_00006183|Name=TCONS_00006183|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0000063:76199..76675 (Clytia hemisphaerica)
GTATATCCATCCTATTTTGATACTTCATCCTGTGCTGAACACCACTGGGT
ACCACTTCATGATGTTATCATCAAATATCTTGCAAAGACATCAAGCGACA
ATATTCACACCATCAAAGAAAGATTTCAAACAGATGCACAATTTCGCCAT
CAAGTTATTTTACAAAATCAGCATATCATTACGACTTACTTTAATGCAAG
ACATTTGAATTATAAAGACACGGttttaaaaagtctttttcaatatGAAG
ATGATTGGAGCAGATATGAGTTTGCAAAGAGTCGGGGTGCCATTCACACA
CATGCGTTGTACTTTTCCAAATCTCATTATGATATTGTCAAATCCATATT
GGACCAAGATACATCAGATCCCAATGTTGATATTGCAAGTGATATTGAAC
AATGGCTACAATCAACTGAATTGAACACAAACGAGACATTCTCGCCCCAT
TTTGTTTCAATGCACCCTGCTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003529XLOC_003529Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006183-proteinTCONS_00006183-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006183-exon-sc0000063-1491911889:76199..76675TCONS_00006183-exon-sc0000063-1491911889:76199..76675Clytia hemisphaericaexon
TCONS_00006183-exon-sc0000063-1510915933:76199..76675TCONS_00006183-exon-sc0000063-1510915933:76199..76675Clytia hemisphaericaexon
TCONS_00006183-exon-sc0000063-1575043694:76199..76675TCONS_00006183-exon-sc0000063-1575043694:76199..76675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:76199..76675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.129091	0	0	0	0.14107	0	0	0	0	0	0.0881641	0.0880415	0	0	0	0	0	0	0	0.127992	0.18729	0	0.137994	0	0	0.181519	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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