TCONS_00006184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006184
Unique NameTCONS_00006184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006184 ID=TCONS_00006184|Name=TCONS_00006184|organism=Clytia hemisphaerica|type=transcript|length=483bp
TGGATTTTCACGAAttgttttttcagaaattgatttAAGGCGTTTCTCTT
CAGCTTGTCTAACTTTCCTCTTAGGATGTCTGTTGAGATACTCTAGACGT
TCAAATGGAATGGGTTCAGCGATACACCAATCGGCATCTTCGGTTATACG
CGAGAATGCGGTATATGCAGTTCCATAGTTTTTTGCTTCCATCCCTATTT
CTGGTGACAGTTTCATAATTACATTAGAGATCTGTTGGTTTCTTCCTATT
GTCATACCTTGGCTTTTTATTATTGTTAATGCATAACCAGTAATCAAAGG
AAATCCTTCACGATGACAGCATTTTGCATCgcaaaaaactttattcaaGG
GTATCGGCACCCAGGTGGGATGGTCCGGGTGCCACTGTGGACCTTTGTAT
TTAGGGAAATCAACAATTATAACTTCTGGGAAGGCAGGGGGTTTTACACC
CTCTTTGTACACGATGCTAACCACAATACCCAA
Run BLAST on NCBI

protein sequence of TCONS_00006184-protein

>TCONS_00006184-protein ID=TCONS_00006184-protein|Name=TCONS_00006184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
LGIVVSIVYKEGVKPPAFPEVIIVDFPKYKGPQWHPDHPTWVPIPLNKVF
CDAKCCHREGFPLITGYALTIIKSQGMTIGRNQQISNVIMKLSPEIGMEA
KNYGTAYTAFSRITEDADWCIAEPIPFERLEYLNRHPKRKVRQAEEKRLK
SISEKTIRENP
Run BLAST on NCBI

transcript from alignment at sc0000063:78295..78777

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006184 ID=TCONS_00006184|Name=TCONS_00006184|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at sc0000063:78295..78777 (Clytia hemisphaerica)
TTGGGTATTGTGGTTAGCATCGTGTACAAAGAGGGTGTAAAACCCCCTGC
CTTCCCAGAAGTTATAATTGTTGATTTCCCTAAATACAAAGGTCCACAGT
GGCACCCGGACCATCCCACCTGGGTGCCGATACCCttgaataaagttttt
tgcGATGCAAAATGCTGTCATCGTGAAGGATTTCCTTTGATTACTGGTTA
TGCATTAACAATAATAAAAAGCCAAGGTATGACAATAGGAAGAAACCAAC
AGATCTCTAATGTAATTATGAAACTGTCACCAGAAATAGGGATGGAAGCA
AAAAACTATGGAACTGCATATACCGCATTCTCGCGTATAACCGAAGATGC
CGATTGGTGTATCGCTGAACCCATTCCATTTGAACGTCTAGAGTATCTCA
ACAGACATCCTAAGAGGAAAGTTAGACAAGCTGAAGAGAAACGCCTTaaa
tcaatttctgaaaaaacaaTTCGTGAAAATCCA

Coding sequence (CDS) from alignment at sc0000063:78295..78777

>TCONS_00006184 ID=TCONS_00006184|Name=TCONS_00006184|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000063:78295..78777 (Clytia hemisphaerica)
TTGGGTATTGTGGTTAGCATCGTGTACAAAGAGGGTGTAAAACCCCCTGC
CTTCCCAGAAGTTATAATTGTTGATTTCCCTAAATACAAAGGTCCACAGT
GGCACCCGGACCATCCCACCTGGGTGCCGATACCCttgaataaagttttt
tgcGATGCAAAATGCTGTCATCGTGAAGGATTTCCTTTGATTACTGGTTA
TGCATTAACAATAATAAAAAGCCAAGGTATGACAATAGGAAGAAACCAAC
AGATCTCTAATGTAATTATGAAACTGTCACCAGAAATAGGGATGGAAGCA
AAAAACTATGGAACTGCATATACCGCATTCTCGCGTATAACCGAAGATGC
CGATTGGTGTATCGCTGAACCCATTCCATTTGAACGTCTAGAGTATCTCA
ACAGACATCCTAAGAGGAAAGTTAGACAAGCTGAAGAGAAACGCCTTaaa
tcaatttctgaaaaaacaaTTCGTGAAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003530XLOC_003530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006184-exon-sc0000063-1491911889:78295..78777TCONS_00006184-exon-sc0000063-1491911889:78295..78777Clytia hemisphaericaexon
TCONS_00006184-exon-sc0000063-1510915933:78295..78777TCONS_00006184-exon-sc0000063-1510915933:78295..78777Clytia hemisphaericaexon
TCONS_00006184-exon-sc0000063-1575043694:78295..78777TCONS_00006184-exon-sc0000063-1575043694:78295..78777Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006184-proteinTCONS_00006184-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:78295..78777 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0996276	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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