TCONS_00006191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006191
Unique NameTCONS_00006191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006191 ID=TCONS_00006191|Name=TCONS_00006191|organism=Clytia hemisphaerica|type=transcript|length=301bp
GTACTGGGACCCCTGCTGTTTTTAGTATATATAAATGACATATCATTAGC
AGTCACATCCTCAGAGATAAGTCTTTTTGCTGATGACGCTCTACTTTACA
AATTcatcaaatcaatcaaagatGCCAGAGATCTGCAAAATGACATGAAC
CACCTTACCCAATGGGAAAAGGACTGGTCCATGGAGTTTAATACTGACAA
ATGTAAAGTCCTGCGATTTACaaataaacacaaaaaaactgaagaaacaT
ATTCAATCCATGGCTACAATCTCGAATTGGTAAAATCAGCTAAATATCTN
N
Run BLAST on NCBI

protein sequence of TCONS_00006191-protein

>TCONS_00006191-protein ID=TCONS_00006191-protein|Name=TCONS_00006191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
VLGPLLFLVYINDISLAVTSSEISLFADDALLYKFIKSIKDARDLQNDMN
HLTQWEKDWSMEFNTDKCKVLRFTNKHKKTEETYSIHGYNLELVKSAKYX
Run BLAST on NCBI

transcript from alignment at sc0000063:316009..316309

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006191 ID=TCONS_00006191|Name=TCONS_00006191|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at sc0000063:316009..316309 (Clytia hemisphaerica)
NNAGATATTTAGCTGATTTTACCAATTCGAGATTGTAGCCATGGATTGAA
TAtgtttcttcagtttttttgtgtttatttGTAAATCGCAGGACTTTACA
TTTGTCAGTATTAAACTCCATGGACCAGTCCTTTTCCCATTGGGTAAGGT
GGTTCATGTCATTTTGCAGATCTCTGGCatctttgattgatttgatgAAT
TTGTAAAGTAGAGCGTCATCAGCAAAAAGACTTATCTCTGAGGATGTGAC
TGCTAATGATATGTCATTTATATATACTAAAAACAGCAGGGGTCCCAGTA
C

Coding sequence (CDS) from alignment at sc0000063:316009..316309

>TCONS_00006191 ID=TCONS_00006191|Name=TCONS_00006191|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000063:316009..316309 (Clytia hemisphaerica)
NAGATATTTAGCTGATTTTACCAATTCGAGATTGTAGCCATGGATTGAAT
AtgtttcttcagtttttttgtgtttatttGTAAATCGCAGGACTTTACAT
TTGTCAGTATTAAACTCCATGGACCAGTCCTTTTCCCATTGGGTAAGGTG
GTTCATGTCATTTTGCAGATCTCTGGCatctttgattgatttgatgAATT
TGTAAAGTAGAGCGTCATCAGCAAAAAGACTTATCTCTGAGGATGTGACT
GCTAATGATATGTCATTTATATATACTAAAAACAGCAGGGGTCCCAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003537XLOC_003537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006191-exon-sc0000063-1491911889:316009..316309TCONS_00006191-exon-sc0000063-1491911889:316009..316309Clytia hemisphaericaexon
TCONS_00006191-exon-sc0000063-1510915933:316009..316309TCONS_00006191-exon-sc0000063-1510915933:316009..316309Clytia hemisphaericaexon
TCONS_00006191-exon-sc0000063-1575043694:316009..316309TCONS_00006191-exon-sc0000063-1575043694:316009..316309Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006191-proteinTCONS_00006191-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000063supercontigsc0000063:316009..316309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.59632	0.734041	3.86983	5.94013	2.61378	2.25369	2.04086	2.31377	0.908044	0.804034	0.390207	0.919487	1.2471	0.359087	0.959148	0.756779	0	1.2591	1.12698	1.1793	1.53538	0.999752	0	1.17053	4.84223	7.80238	0.990865	0.884023	2.02647	3.07189
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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