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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006200 ID=TCONS_00006200|Name=TCONS_00006200|organism=Clytia hemisphaerica|type=transcript|length=1555bp
TTTCGGTGCCTGAAGAACAATTCAAAACAGGGTAGTTTCATTATGGAAAT
TATTCCTCCTTTTTAAAACTACAATATTAGTTTATAATATATTACAAAAT
GATACATCTTTGATATTATGATATAGTATAATGTTACTCgctttatttac
aaaaaaatcaaatattaattttgtacaaaaagggttaaaaaatcaaaaac
atgctaGGGGTATCATGATTTTCAAACATTTCGTCTCTCTTATGAAGAAA
GATTTAGGGGCTCAACTAGCAGATTAAAAGCCTCATCTGTATTTCACGAC
CTGAATTTTCTCACAGGGTTGATCATAGTAACGTGACATCCAAAACGGTT
TATCCTGTTTTAATCAAACTCTCCCGATAAGATGAGAGAAAAAGGACGAG
GGGTATTACATAATGACGTAATATTTGCTTGAACTGTGCTTTTAATCAAG
TCAAAACGTGCTTCTTTCTATCGAATTTCTTGATATCATCTACATACCTT
TGTATACTATTTTTTATAGCACTATCCAATTTTTGATTAGATCCAATTTT
TTAGCACTTTGAAcgtcaaattgttcttatttttatcttatttaaagGGT
AAAACAAAGGTACTTTACATCATACTCTTTTTTATACTTTGGCCATCAAC
GTGCTTAGGATTCAGCACTTTCAGACTTAAGTCTGTtcttatattcatga
tattcatgacgtaatgttttcctaCGGAAATATCCCAGTTtaagccagta
gtggcaaatttaaactagacaaaaactactttaaactacttTCCGTagta
aacattacgtcatgaatatcatgaacggtttattttttgtaattcttgAG
CCTCATTGTCTTTATaacttattcttataaaattgtgtacTTTTTTCATA
GCCATTACTTTACTTTACTTCcctgttttttgttgtttttttttcaggga
aTCAGAATTTTTATCATTATGTACAGCAAATACTTCCTCCTTTAGAAATA
TTATTTGTCCGCAGACCGACACGAATTAATTGATTATGTGTATACTTTTC
TAATGAGCTACTCTGTGTCGGTGAGTTTTCCGAAATTTACCGAAAATATT
GATAACCGCTTTATAAGAAAACCAATGGCTATGCATTTTCCACCGGCTAA
TGCTttccaaaaattatggtaattttcatgtttttgagacatgccataac
ttacctgagttaGTGTATATCGAGGTATATAAAAAATTCTTACAGAAAAT
GCATGATACGATTGATATGATATGTAAATTACTAGACCGGCAAAGAATTA
ATCCATTACGCACGTAAAGCACATCACGAAGTTGACTGAGAGATAGAGAT
GATATTAATAACNATCTAACATTACATGGATGTAATGGACGTtacatcta
acgttatatggacgttaaaCAACTTTGTGTTCTAGCTTGGGTCTATTTAT
ACTACTTGTACTGTTTTTAGCACCGATCTTTTAATAGGTCGGCAATTGAA
AAAGTTCAATGATTTAGTAAGCATGTGTAGAGCATAAGAAATTCTTACAG
AAAAT Run BLAST on NCBI transcript from alignment at sc0000063:553334..554888 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006200 ID=TCONS_00006200|Name=TCONS_00006200|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at sc0000063:553334..554888 (Clytia hemisphaerica)
ATTTTCTGTAAGAATTTCTTATGCTCTACACATGCTTACTAAATCATTGA
ACTTTTTCAATTGCCGACCTATTAAAAGATCGGTGCTAAAAACAGTACAA
GTAGTATAAATAGACCCAAGCTAGAACACAAAGTTGtttaacgtccatat
aacgttagatgtaACGTCCATTACATCCATGTAATGTTAGATNGTTATTA
ATATCATCTCTATCTCTCAGTCAACTTCGTGATGTGCTTTACGTGCGTAA
TGGATTAATTCTTTGCCGGTCTAGTAATTTACATATCATATCAATCGTAT
CATGCATTTTCTGTAAGAATTTTTTATATACCTCGATATACACtaactca
ggtaagttatggcatgtctcaaaaacatgaaaattaccataatttttgga
aAGCATTAGCCGGTGGAAAATGCATAGCCATTGGTTTTCTTATAAAGCGG
TTATCAATATTTTCGGTAAATTTCGGAAAACTCACCGACACAGAGTAGCT
CATTAGAAAAGTATACACATAATCAATTAATTCGTGTCGGTCTGCGGACA
AATAATATTTCTAAAGGAGGAAGTATTTGCTGTACATAATGATAAAAATT
CTGAttccctgaaaaaaaaacaacaaaaaacaggGAAGTAAAGTAAAGTA
ATGGCTATGAAAAAAgtacacaattttataagaataagttATAAAGACAA
TGAGGCTcaagaattacaaaaaataaaccgttcatgatattcatgacgta
atgtttactACGGAaagtagtttaaagtagtttttgtctagtttaaattt
gccactactggcttaAACTGGGATATTTCCGtaggaaaacattacgtcat
gaatatcatgaatataagaACAGACTTAAGTCTGAAAGTGCTGAATCCTA
AGCACGTTGATGGCCAAAGTATAAAAAAGAGTATGATGTAAAGTACCTTT
GTTTTACCctttaaataagataaaaataagaacaatttgacgTTCAAAGT
GCTAAAAAATTGGATCTAATCAAAAATTGGATAGTGCTATAAAAAATAGT
ATACAAAGGTATGTAGATGATATCAAGAAATTCGATAGAAAGAAGCACGT
TTTGACTTGATTAAAAGCACAGTTCAAGCAAATATTACGTCATTATGTAA
TACCCCTCGTCCTTTTTCTCTCATCTTATCGGGAGAGTTTGATTAAAACA
GGATAAACCGTTTTGGATGTCACGTTACTATGATCAACCCTGTGAGAAAA
TTCAGGTCGTGAAATACAGATGAGGCTTTTAATCTGCTAGTTGAGCCCCT
AAATCTTTCTTCATAAGAGAGACGAAATGTTTGAAAATCATGATACCCCt
agcatgtttttgattttttaaccctttttgtacaaaattaatatttgatt
tttttgtaaataaagcGAGTAACATTATACTATATCATAATATCAAAGAT
GTATCATTTTGTAATATATTATAAACTAATATTGTAGTTTTAAAAAGGAG
GAATAATTTCCATAATGAAACTACCCTGTTTTGAATTGTTCTTCAGGCAC
CGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006200-exon-sc0000063-1491911889:553334..554888 | TCONS_00006200-exon-sc0000063-1491911889:553334..554888 | Clytia hemisphaerica | exon |
| TCONS_00006200-exon-sc0000063-1510915933:553334..554888 | TCONS_00006200-exon-sc0000063-1510915933:553334..554888 | Clytia hemisphaerica | exon |
| TCONS_00006200-exon-sc0000063-1575043694:553334..554888 | TCONS_00006200-exon-sc0000063-1575043694:553334..554888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000063 | supercontig | sc0000063:553334..554888 . |
Blast
The following BLAST results are available for this feature:
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