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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006215 ID=TCONS_00006215|Name=TCONS_00006215|organism=Clytia hemisphaerica|type=transcript|length=3777bpRun BLAST on NCBI protein sequence of TCONS_00006215-protein >TCONS_00006215-protein ID=TCONS_00006215-protein|Name=TCONS_00006215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=958bp SVYIYKYIVAVKIKELNLNNIQFFVNSWKNTCVAGNIITPLCHAHSGNFKRun BLAST on NCBI transcript from alignment at sc0000066:11092..38588+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006215 ID=TCONS_00006215|Name=TCONS_00006215|organism=Clytia hemisphaerica|type=transcript|length=27497bp|location=Sequence derived from alignment at sc0000066:11092..38588+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:11092..38588+ >TCONS_00006215 ID=TCONS_00006215|Name=TCONS_00006215|organism=Clytia hemisphaerica|type=CDS|length=2877bp|location=Sequence derived from alignment at sc0000066:11092..38588+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006215 vs. Swiss-Prot (Human)
Match: IMB1 (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2) HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0 Identity = 482/874 (55.15%), Postives = 644/874 (73.68%), Query Frame = 2
Query: 257 ELKRVLQGTVSPDQNELQAALKYLEDAATHNFPQFVDCLSSLLSNASEPSEVRQAAGIQLKNCLVAKSASLKQGYHERWFNLEEQIRNKVKAQVLQSLGTETTKPSSAASCVSGIASAELPLNLWPELMQQLCEVASAPGSSETLKEASLEAIGYICQDLDHQFLTQHSAAILRTIMTGLAKEQPXXXXXXXXXXXXXXSLEFIRGNFEKQDDRNFMMTVLCNATVCPEKRIKVASLQCCVKIMSLYYEYMGPYM-QSLFNITVDAMKSDDEDVVLQGVEFWSSVCXXXXXXXXXXXXXXXMSQEIKSFSQYYAKNALQHIVPIVVEILTRQEEHDDEEDWTPHKAAGVCLMLLASCCGNDIVDHVLPFVKENIQKTDWKLRDASVMAFGSILEGPDPEKISAPVKEGIGLLIALMEDPNMTVRDSVAWTLTRICEQIPEAALNTNHIENFLNALIKNLDSEPRVANNVCWAFSALADAAYDSAQCGDDESEPKTYXXXXXXXXXXXXXXATGDRGDAHLSNLRSSAYEAVMDLVKNSPKDVYEAIGQTFEAILGKMVTILKMEEQGNQVGDYSQHNDFKSLLCATLQATLRKLTPEDVMKASKQCMEALLRML-TVSKVGGVQEDAFMAVGTMVECLGNNFMGYLEAFKPFLIQGLQNRAEYSVCISAIGVVGDLCRAVGAEITPYCDEIMQSCLENLADNSVHRSVKPHVLSTFGDIALAIGKNFSKYAEIVLTTLVQASGAQVDKSDYDLVDYLNELREHCLEAYTGIIQGLKGEDDKNINPEVQIVTPQLFAIFQFIEVISQDPDRTDALVGACCGLLGDICTAFELPQNLKDAXXXXXXXXXXXXGRRSKESKTRTLSVWASKTIRNMR 2872
EL +L+ TVSPD+ EL+AA K+LE AA N P F+ LS +L+N R AAG+Q+KN L +K +K Y +RW ++ R +VK VLQ+LGTET +PSSA+ CV+GIA AE+P+N WPEL+ QL + P S+E +KE++LEAIGYICQD+D + L S IL I+ G+ KE+P+NN+K AA NA LNSLEF + NF+K+ +R+F+M V+C AT CP+ R++VA+LQ VKIMSLYY+YM YM +LF IT++AMKSD ++V LQG+EFWS+VCDEE+DLAIEA++A E + + S++YAK ALQ++VPI+ + LT+Q+E+DD++DW P KAAGVCLMLLA+CC +DIV HVLPF+KE+I+ DW+ RDA+VMAFG ILEGP+P ++ V + + LI LM+DP++ VRD+ AWT+ RICE +PEAA+N ++ L LI+ L +EPRVA+NVCWAFS+LA+AAY++A DD+ EP TY LSS F I+ K++ T DR D H +NLRSSAYE++M++VKNS KD Y A+ +T I+ ++ +L+ME D Q ND +SLLCATLQ LRK+ +D ++ S M +LLRM + + GGVQEDA MAV T+VE LG F+ Y+EAFKPFL GL+N AEY VC++A+G+VGDLCRA+ + I P+CDE+MQ LENL + +VHRSVKP +LS FGDIALAIG F KY E+VL TL QAS AQVDKSDYD+VDYLNELRE CLEAYTGI+QGLKG D +N++P+V +V P++ I FI+ I+ D D TD +V GL+GD+CTAF LK + +I ELL+EGRRSK +K +TL+ WA+K +R ++
Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG-DQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFG-KDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRKLK 873 The following BLAST results are available for this feature:
BLAST of TCONS_00006215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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