TCONS_00006234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006234
Unique NameTCONS_00006234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006234 ID=TCONS_00006234|Name=TCONS_00006234|organism=Clytia hemisphaerica|type=transcript|length=1972bp
CCACGCCTAACATTTAGACTTTAATgtattaattttaaaataatgtaGTG
GTTTGCACGAGATGTTCATTATCAACAGGATCTTAAAATGAATAGTGATT
TGTCTGCAATGTCTTATTTATAAAGAAGATATCTCTTGATGGCTGGACag
gcatttttaaagaaaaatctgCTCACTATcgctttgtttttgttgaatat
tgaaaatgtgtTTGTCTCACGTCCACCAATATTCTGGGATCCCTACCATA
AATTGTTTTCCTGCAAGGATCCTATTGTGAATGTGAAAGAAAATGATTTG
TTGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACA
TTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAAC
AAGAATATGAAAATTGTGATGCTAGAAATCATGACAATGTATTACTGAAC
TGCACATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTCT
TTCACCTGACGCACCTTCTTTCACACCTGGAAAGACCTATTATGTGATAG
CTCCAAGTTATCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAGT
TGCAATGACACATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGT
TTGTACTgatcaagaaattcaagatggTGATTGCAAGTTATGTGAAAGTG
AAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGATGATTGGATTGAT
CCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTTTT
AAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTA
ATAACCCTGCTGTTACAACAGGTACTTTAAGCACAACAGGTGCTTTAAGC
ACAACTGGAAGTGTCAGCACTGTTTACACTGTTAGTACACTCAGCAGCAC
CAGCACCACAAGTTCAAGTTCAACCAGTTCAGTCACAGTCAGTCCTGTTC
CAGGTAAAAAAACTGGCGAGGAAAATAATAAGGATGACTCATACAAATAC
ATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCT
GGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGG
acATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAA
TATGACAATCGTAAAAGTAAAGTCACAAATTAAAATCATCAGTCCCTTCt
ataatatttatttcattttttagaaatgttgataataaaaatttgtaaat
atttttcttttgagcaTATTATTTATAAGATGTTGATAGTAGACCAAATT
TATTTTACCACGTTAAAATTCTGCattattctatttttattttgatatct
GAAACAGTATATTGTATTACCCTATGTGTATTTTAtatgttgtatttttt
ttttatcgcTTTAATAAAATGTTTTAGCTTGATTTCTATTCCCTTTTGAA
AGTATGCAAAAGTATGGCATACTTCTTTCttctgaaaataaaaagctTCG
TTATATTATGCTTTCATAGTCAAAAGACTTTCGCAAATTCCTCATTTTTT
GATCtatgaaatttagaaattgTTATTGCTCTAAGTTGAGGGCTATGGTA
CTACAGATCTTTCTGTTGAGTGGGTAGTTGGATGAGTAAAATAATTCGAT
TTACATGTGTGTGAGTTTCGTTATCTTTATGTATTTCCAAGTATTTAGGA
AAATGGCACCTctatcaaatcaaaatattttatttatgagAACCTCAAAA
GGATCTGATTCATCAATCATTCTCTTTATGTCCTGATTCAATTTTAAGAT
TCATAATATATTTATGATTTATATAGAAAAAAGGATATAAAAATTAGACT
ACTGTACTGTATgtggaaaaaagaaagaaatatgttttgaaaagtctccA
TTCCTTTAATATGATGGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000066:258126..262371+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006234 ID=TCONS_00006234|Name=TCONS_00006234|organism=Clytia hemisphaerica|type=transcript|length=4246bp|location=Sequence derived from alignment at sc0000066:258126..262371+ (Clytia hemisphaerica)
CCACGCCTAACATTTAGACTTTAATgtattaattttaaaataatgtaGTG
GTTTGCACGAGATGTTCATTATCAACAGGATCTTAAAATGAATAGTGATT
TGTCTGCAATGTCTTATTTATAAAGGTGAGTTTCGATTTCTATAATATAC
TTTTTTATGGATACGGTTTTTTTGTACCAAATTTGCATGTTTCATTTTCT
AACATGGTGATAACATCATATTTTATTCTGAGATTCAGCGAAACTTAAAA
GAATGTAATTTACAATATTTGATGATTAGGACTTCTATTATGTCATCATA
AGTTTTTGATGTCATCTTTTGTTACTATAATTACTACAGTTTAAACAATT
TATTGCTTTGCCATGGAAACGTGATGCTCTCTATAAAACATGCATTCTAT
TAAGAGAACAGTTAAAAACAATCTTTTTAGTTTCAATTATTTATGCCTTT
AACTCACTCACTTTCTCTCTGTTAATAGTTGACTTGTTATCTTATTTCAG
AAGATATCTCTTGATGGCTGGACaggcatttttaaagaaaaatctgCTCA
CTATcgctttgtttttgttgaatattgaaaatgtgtTTGTCTCACGTCCA
CCAATATTCTGGGATCCCTACCATAAATTGTAAGTAGTTCAATTTCTTAT
CAAATATCTTTGTGATATCCAAGTTTAACTTTGTTTTATTAACCTTCCTT
TTTGTCTTAATTTTAGGTTTTCCTGCAAGGATCCTATTGTGAATGTGAAA
GAAAATGATTTGTTGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAA
ACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACT
ACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAGTGAGTTAAAA
TGAAAGACATCTCTTtgtacaaaagaaattattttcattattagGAGATA
CTCATTTCAGTTgacttaaaacttttaaaataagtCTTAATTTGGTGAAA
GTTGTATATTGAAATTAAATTACTACTTATTCATTTCTCTTAGATCATGA
CAATGTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGA
TCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAG
ACCTATTATGTGATAGGTAATAAACATTtcctaaaaaatctttttacaaa
atgaaaaagtatAGAAACTATTTGCTAAAGGTCAGAAATTAAATGAATTG
ATGCCATCAAAGTTTCTCATTGAAATTCGAATTATTTCTCTTTTCAAATA
GCTCCAAGTTATCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAG
TTGCAATGACACATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATG
TTTGTACTgatcaagaaattcaagatggTGATTGCAAGTTATGTGAAAGT
GAAGGCTGCTATTATGAAGGTCAGTTGTTTATTAGTCATAATAAGTCTTa
ctgtcaaaaaaatttgtttcctACTGACAGTTTTTCATTCTCATGCAATT
GTTAGGTTGACAATTTTGGTAGAAATATGATGAAAACCTGTCCTTGCatt
cacattatcattgaaaaaaaacttttcttttccctTACAGCTTGTGGCAA
GCAATGTGACGATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAA
GACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAG
ATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTACTTT
AAGNGGTTAAATGAAAGACATCTATTtgtacaaaagaaattattttcatt
attagGAGATACTCATTTCAGTTgacttaaaaattttaaaataagtcTTA
ATTTGGTGAAAGTTGTATATTGAAATTAAATTACTACTTATTCATTTCTC
TTAGATCATGACAACGTATTACTGAACTGCACATCAAAATATATGGTTAC
ACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCA
CACCTGGAAAAACCTATTATGTGATAGGTAATAAACATTtcctaaaaaat
ctttttacaaaatgaaaaagtatAGAAACTATTTGCTAAAGGTCAGAAAT
TAAATGAATTGATGCCATCAAAGTTTCTCATTGAAATTCGAATTATTTCT
CTTTTCAAATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATG
GTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCT
GAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGT
TATGTGAAAGTGAAGGCTGCTATTATGAAGGTCAGTTGTTTATTAGTCAT
AATAAGTCTTactgtcaaaaaaatttgtttcctACTGACAGTTTTTCATT
CTCATGCAATTGTTAGGTTGACAATTTTGGTAGAAATATGATGAAAACCT
GTCCTTGCattcacattatcattgaaaaaaaacttttcttttccctTACA
GCTTGTGGCAAGCAATGTGATGATTGGATTGATCCTGTCGATAATGACTG
TTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAG
AATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACA
ACAGGTACTTTAAGCACAACAGGTGCTTTAAGCACAACTGGAAGTGTCAG
CACTGTTTACACTGTTAGTACACTCAGCAGCACCAGCACCACAAGTTCAA
GTTCAACCAGTTCAGTCACAGTCAGTCCTGTTCCAGGTAACTCAGTCAGT
AATAATAAGTAATCTAAAAGCTTTGTTTATATGCTTAAAAGCTAGGTAGC
ACTTTGACAGTAAACTTATTCTTGAGGTATTTGCCCAGTATGATGTGTat
ttatattgaaaattttagtaacagactttttcaagttttagtaAACTTTA
GATAACTGGATAAATTGAGTTGTTTTAGTTTACCTTGTACGTCCTTTTTC
TTTCAGGTAAAAAAACTGGCGAGGAAAATAATAAGGATGACTCATACAAA
TACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGG
CCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTG
TGGGTAAGTTCCCTTAAATTCTTTGCATtcttaaatatttctttttatat
atgaGCTGACCAGTGCTCAATTAAGCCAATTATATATAGATAAATAGGAA
AGTAGGAAAATTGGTAGAGGTACTTTTACCACAGCTAATACTTTTAATTA
ATATGACTTATATTGTCTTGACACAGGTTACGTCATCCGTTTTTTAGata
gaatttctttttctttcatttcagacATAGAAAGGAATAACTCCAAGCAT
AGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAAAGTCAC
AAATTAAAATCATCAGTCCCTTCtataatatttatttcattttttagaaa
tgttgataataaaaatttgtaaatatttttcttttgagcaTATTATTTAT
AAGATGTTGATAGTAGACCAAATTTATTTTACCACGTTAAAATTCTGCat
tattctatttttattttgatatctGAAACAGTATATTGTATTACCCTATG
TGTATTTTAtatgttgtattttttttttatcgcTTTAATAAAATGTTTTA
GCTTGATTTCTATTCCCTTTTGAAAGTATGCAAAAGTATGGCATACTTCT
TTCttctgaaaataaaaagctTCGTTATATTATGCTTTCATAGTCAAAAG
ACTTTCGCAAATTCCTCATTTTTTGATCtatgaaatttagaaattgTTAT
TGCTCTAAGTTGAGGGCTATGGTACTACAGATCTTTCTGTTGAGTGGGTA
GTTGGATGAGTAAAATAATTCGATTTACATGTGTGTGAGTTTCGTTATCT
TTATGTATTTCCAAGTATTTAGGAAAATGGCACCTctatcaaatcaaaat
attttatttatgagAACCTCAAAAGGATCTGATTCATCAATCATTCTCTT
TATGTCCTGATTCAATTTTAAGATTCATAATATATTTATGATTTATATAG
AAAAAAGGATATAAAAATTAGACTACTGTACTGTATgtggaaaaaagaaa
gaaatatgttttgaaaagtctccATTCCTTTAATATGATGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003570XLOC_003570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006234-exon-sc0000066-1491911889:258126..258250TCONS_00006234-exon-sc0000066-1491911889:258126..258250Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:258126..258250TCONS_00006234-exon-sc0000066-1510915933:258126..258250Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:258126..258250TCONS_00006234-exon-sc0000066-1575043694:258126..258250Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:258626..258754TCONS_00006234-exon-sc0000066-1491911889:258626..258754Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:258626..258754TCONS_00006234-exon-sc0000066-1510915933:258626..258754Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:258626..258754TCONS_00006234-exon-sc0000066-1575043694:258626..258754Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:258842..259014TCONS_00006234-exon-sc0000066-1491911889:258842..259014Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:258842..259014TCONS_00006234-exon-sc0000066-1510915933:258842..259014Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:258842..259014TCONS_00006234-exon-sc0000066-1575043694:258842..259014Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:259169..259291TCONS_00006234-exon-sc0000066-1491911889:259169..259291Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:259169..259291TCONS_00006234-exon-sc0000066-1510915933:259169..259291Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:259169..259291TCONS_00006234-exon-sc0000066-1575043694:259169..259291Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:260338..260505TCONS_00006234-exon-sc0000066-1491911889:260338..260505Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:260338..260505TCONS_00006234-exon-sc0000066-1510915933:260338..260505Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:260338..260505TCONS_00006234-exon-sc0000066-1575043694:260338..260505Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:260677..260961TCONS_00006234-exon-sc0000066-1491911889:260677..260961Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:260677..260961TCONS_00006234-exon-sc0000066-1510915933:260677..260961Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:260677..260961TCONS_00006234-exon-sc0000066-1575043694:260677..260961Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:261182..261328TCONS_00006234-exon-sc0000066-1491911889:261182..261328Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:261182..261328TCONS_00006234-exon-sc0000066-1510915933:261182..261328Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:261182..261328TCONS_00006234-exon-sc0000066-1575043694:261182..261328Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1491911889:261550..262371TCONS_00006234-exon-sc0000066-1491911889:261550..262371Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1510915933:261550..262371TCONS_00006234-exon-sc0000066-1510915933:261550..262371Clytia hemisphaericaexon
TCONS_00006234-exon-sc0000066-1575043694:261550..262371TCONS_00006234-exon-sc0000066-1575043694:261550..262371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:258126..262371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55315	2.13958	10.9986	15.6854	0.21301	1.94769e-06	1.02296e-06	0	0.308787	2.23804	1.5468	1.13537	3.83865	2.84393	3.16927	3.90653	1.32161	3.38879	2.1828	2.15656	0	1.60628	0.943405	1.79218	11.5781	11.0061	16.973	14.0381	0	1.36816
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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