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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006248 ID=TCONS_00006248|Name=TCONS_00006248|organism=Clytia hemisphaerica|type=transcript|length=1159bpRun BLAST on NCBI transcript from alignment at sc0000066:284083..309294+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006248 ID=TCONS_00006248|Name=TCONS_00006248|organism=Clytia hemisphaerica|type=transcript|length=25212bp|location=Sequence derived from alignment at sc0000066:284083..309294+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006248 vs. Swiss-Prot (Human)
Match: TADA1 (Transcriptional adapter 1 OS=Homo sapiens GN=TADA1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.016e-16 Identity = 50/162 (30.86%), Postives = 89/162 (54.94%), Query Frame = 3
Query: 720 DEHDVKLCTQNLVLPDVATLYGRLYLGALDAELEQISDESAHLLVSAVETHLKNILTACVSRRKPFKIRSGSHFQHRYGSSHIKTLLLNNSLSKPRD------------AKQRFQTY---EQAEAECYARFA-AGEVRNSVLPPISLPDLRDTILEKKDTIP 1157
D+ D+KLC+ ++LP L GR+ + A + L+ +++E+ +V AVE HLK+ILT+ VSRRK +++R G HF++ +GS+ L NS+ + A Q ++ + AE + A +G+ + LPP+++ DL + + ++ IP
Sbjct: 132 DDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDG-HFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIP 292 HSP 2 Score: 78.1814 bits (191), Expect = 5.943e-16 Identity = 33/72 (45.83%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 352 DVATARRKLMEALGEYSEKYWNNMKLWYKQKITKDDFDTQAFELLGPGKINYHNEFILSILAKCQSVAVSSP 567
++ A++ L EALG+ ++YW N+KLW+KQKI+K++FD +A LL ++ HN+F+L+IL +CQ + VS+P
Sbjct: 7 ELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQ-ILVSTP 77 The following BLAST results are available for this feature:
BLAST of TCONS_00006248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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