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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006322 ID=TCONS_00006322|Name=TCONS_00006322|organism=Clytia hemisphaerica|type=transcript|length=2186bpRun BLAST on NCBI protein sequence of TCONS_00006322-protein >TCONS_00006322-protein ID=TCONS_00006322-protein|Name=TCONS_00006322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp MFNQRDVQRLSIASGMPELTDKNKIYPFLTKYERQKILLISECEEERRIARun BLAST on NCBI transcript from alignment at sc0000066:630621..682528- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006322 ID=TCONS_00006322|Name=TCONS_00006322|organism=Clytia hemisphaerica|type=transcript|length=51908bp|location=Sequence derived from alignment at sc0000066:630621..682528- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:630621..682528- >TCONS_00006322 ID=TCONS_00006322|Name=TCONS_00006322|organism=Clytia hemisphaerica|type=CDS|length=20115bp|location=Sequence derived from alignment at sc0000066:630621..682528- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006322 vs. Swiss-Prot (Human)
Match: CK065 (Uncharacterized protein C11orf65 OS=Homo sapiens GN=C11orf65 PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.650e-67 Identity = 116/256 (45.31%), Postives = 175/256 (68.36%), Query Frame = 3
Query: 684 FTTLD-AVVAVQRFWRRNVNIQVFKYYKDLINFRCQGDAKYMLRCINPKECDLLDSSSGVHVRFRLGGVKFPPTVYYKIFSHINVADVCSFAPRDYTKRKEVPSKFVHNVKLEGYIENNEQPEDWYQRIENNGWRPVTNRTLKYLSQDSIPYESNRKKIEYNHDKLQRRQDVERXXXXXXIEWMQKMYKAGILQTKGKQVQEVKELVDTAAMGVFQSVEQHGIEAVEDWEVDELLQWTNGLNFDSYLEDWHEYGTT 1448
FT D A +Q+ W+ +N+ +F+++K LI+ R QG+ + +++ INPKE +LLD+++G+HVRFRLGGVKFPP +YYKIF+H + D+C+ +PR+Y K +P+K + K + E E WY RIENNGWRPV++ +LS D + E ++K+ E++ KL+RRQD+E+K+K +KIEWM++MY +G L+ K E L+ TA G+ ++ E GI++V +WEVDE+L WTN LNFD Y+ W E T+
Sbjct: 9 FTKQDKAARVIQQAWKSFLNVAIFQHFKSLIDLRRQGEPRQIVKYINPKEAELLDAAAGIHVRFRLGGVKFPPDIYYKIFTHRPIEDLCANSPRNYAK---LPAKHTSHNKNDHLQE--EDHSGWYHRIENNGWRPVSDTF--WLSTDGMVVE-DKKESEFHFSKLKRRQDLEKKRKLRKIEWMRQMYYSGSLEAKSTH-HETLGLIHTATKGLIRAFEDGGIDSVMEWEVDEVLNWTNTLNFDEYIASWKEIATS 255 The following BLAST results are available for this feature:
BLAST of TCONS_00006322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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