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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006385 ID=TCONS_00006385|Name=TCONS_00006385|organism=Clytia hemisphaerica|type=transcript|length=2460bp
AACAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCAT
TGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCATTT
TCGACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAA
TCGGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACC
AAAGATTGAGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAG
AAATATCATCAATGgttttatcaaaaatgaaagataCTGCTGAAAATTAT
CTGGGAGAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAA
CGACAGCCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGA
ACGTCTTGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGC
CTTGACAAGTTCACTGATGAcgaaagaaatgttttgattttcgatCTTGG
AGGTGGCACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTG
AAGTGAAATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGAC
AACAGAATGGTGGAACATTTCGTAGCCGTAAGTCCTTCAATCATAATTTT
TTCATCTCTTATTCATGTCATTAAGGAGTATAAGATAATAAATCTTTATA
AATAAAAGCATCAGCTTTGCATAAATCGAGACATTTGACAACACCGGTTA
AAAAAGTAGTGCATCGGACCTAATTTTAGATCAACATGGTATATGAGACT
TAATTATTTATCAAGAAATTCTATTTTGCGCACTTCTTGCCTACTCCACT
GAATTGTGTTGGATGAGTCGACAATTCTTGAGAATATCCATTAAGATTga
ctaatttttctttttctttcaagtAAGTGCATTGACTAATTTGTTTCTCT
CTTTCTACCTTCAGGAGATCAAACGAAAACACAAGAAAGATATCACATCC
AACAAACGAGCTATCAGACGTTTAAGAACAGCTTGCGAAAAAGCCAAACG
AACTCTCTCTTCGACAGCTCAAGCTTCTATCGAGATCGATTCCCTTTTCG
ACGGAGTTGATTTCTTCACATCTATCTCCAGAGCAAGGTTTGAGGAGCTA
AACTCAGAGATGTTCAAGAAGACGTTGGAACCGGTACAAAAAGCCCTTGC
AGACGCCAAGTTAGATAAATCACAAATTCATGAAATCGTTTTGGTTGGAG
GATCAACAAGAATCCCGAAAATCCGAAAGATGTTACAAGATTATTTCAAC
GGGAAATCACTCTGTAATTCTGTCAACCCAGATGAAGCTGTTGCATATGG
AGCTGCCATCCAAGCTGCCATCTTGACTGGCTCAAAAGACGATGCTGTTA
AAGATCTACTATTGATTGACGTGGCTCCTTTATCACTTGGTATTGAGACA
GCTGGAGgagtgatgacgtcactcatcaaaCGAAACACCAAAATCCCATG
CAATCAAGCTCAAACCTTCACAACGTACTCCGACAATCAACCCGGTGTCA
GCATCCAAGTCTTTGAAGGTGAACGAAGTATGACCAAAGATAACCATCGA
CTTGGAGAATTTGAACTTTCTGGAATCGCACCAGCCCCAAGAGGTGTACC
GCAGATCGAAGTTACTTTCGATATCGATGCTAATGGTATTTTAAATGTGA
CAGCCAAAGACAAGAGCACTGGCAAAGATGCACACATTACCATCAATAAA
GGTCGATTATCCAAGGACGAGGTTGAGAGGATGGTACAGGATGCTGAGAA
ACATCGTGCGGAAGACGAGCAGCAAAAGGAACGAGTGGATGCAAGAAACG
CACTTGAAGCCTACGCCTTCCAAATGAAAAGCACTGTTGATGACTCAAAC
ATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAGACAATCCTCAAGAAATG
CCAAGAAGTTTTGCAATGGATTGATGGCAATCAGCTGGCATCAAAGGAGG
AATTCGAACACCAGAAAAGCGAATTGGAGAACGTTTGTCGACCCATCATG
ACCAAATTGCATCAAGGTGGAGCAACAGGAGCTGGCCAATCCAACATGTC
TCAAGGTGGACCAACTGTCGAAGAAGTTGACTAAACAAAGTATATTCAAG
AGAACATTATACCTGAGTATacctataaaaaagaaaaattatgatAATAT
CGCTGTTAAAAGAAACCATTGTAGCAGTAGGAAACCATTATATTTatgta
aattttattgtttGATTTAAAGACATTGTATATTTCAAAAGAACtttgtt
gtaaaaaaaaatgaagttagtCTTCATTCAACCATTATTTAActcaaaag
atttgaaaaaagaacAGTCGTAAAAGAACAagccattttgaaataaatat
tcATCTGTATTCTTATTGACCGTAAATTTCATACACCCTTccggaaaaat
tggccaaaat Run BLAST on NCBI transcript from alignment at sc0000067:100336..103762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006385 ID=TCONS_00006385|Name=TCONS_00006385|organism=Clytia hemisphaerica|type=transcript|length=3427bp|location=Sequence derived from alignment at sc0000067:100336..103762+ (Clytia hemisphaerica)
AACAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCAT
TGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCATTT
TCGACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAA
TCGGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACC
AAAGATTGAGGTATGTATTTTCAGTCAGTCTTATTCTTTTTGTTAACTCT
AATAGCTTATTGAAAAGCAATCAGAACTTGCCATCATCAGTATCCTATAA
TGTGTTATTTTCTTTATTactcaatgtttttattttttgttgcaCGTCAG
TTGTATACAATAAATTGACAtttaatttcatatttcatattttcatttca
GGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAAATATCAT
CAATGgttttatcaaaaatgaaagataCTGCTGAAAATTATCTGGGAGAG
AAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAACGACAGCCA
ACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAACGTCTTGC
GTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCTTGACAAG
TTCACTGATGAcgaaagaaatgttttgattttcgatCTTGGAGGTGGCAC
CTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAAGTGAAAT
CAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAACAGAATG
GTGGAACATTTCGTAGCCGTAAGTCCTTCAATCATAATTTTTTCATCTCT
TATTCATGTCATTAAGGAGTATAAGATAATAAATCTTTATAAATAAAAGC
ATCAGCTTTGCATAAATCGAGACATTTGACAACACCGGTTAAAAAAGTAG
TGCATCGGACCTAATTTTAGATCAACATGGTATGTGAGACTTAATTATTT
ATCAAGAANTTCTTTTTGTTAACTCTAATAGCTTATTGAAAAGCAATCAG
AACTTGCCATCATCAGTATCCTATAATGTGTTATTTTCTTTATTactcaa
tgtttttattttttgttgcaCGTCAGTTGTATACAATAAATTGACAttta
atttcatatttcatattttcatttcaGGTCGATTTCAAAGGGGAACGAAA
GATTTATACTCCAGAAGAAATATCATCAATGgttttatcaaaaatgaaag
ataCTGCTGAAAATTATCTGGGAGAGAAAGTTACAGATGCAGTCATTACA
GTCCCAGCATATTTCAACGACAGCCAACGACAAGCCACAAAAGACGCAGG
TGTGATTGCTGGTTTGAACGTCTTGCGTGTTGTTAATGAACCAACAGCAG
CAGCAATTGCTTACGGCCTTGACAAGTTCACTGATGAcgaaagaaatgtt
ttgattttcgatCTTGGAGGTGGCACCTTTGATGTCTCAGTACTGGCAAT
TGATAATGGAGTCTTTGAAGTGAAATCAACCCGTGGCGACACGCACCTTG
GTGGCGAAGACTTTGACAACAGAATGGTGGAACATTTCGTAGCCGTAAGT
CCTTCAATCATAATTTTTTCATCTCTTATTCATGTCATTAAGGAGTATAA
GATAATAAATCTTTATAAATAAAAGCATCAGCTTTGCATAAATCGAGACA
TTTGACAACACCGGTTAAAAAAGTAGTGCATCGGACCTAATTTTAGATCA
ACATGGTATATGAGACTTAATTATTTATCAAGAAATTCTATTTTGCGCAC
TTCTTGCCTACTCCACTGAATTGTGTTGGATGAGTCGACAATTCTTGAGA
ATATCCATTAAGATTgactaatttttctttttctttcaagtAAGTGCATT
GACTAATTTGTTTCTCTCTTTCTACCTTCAGGAGATCAAACGAAAACACA
AGAAAGATATCACATCCAACAAACGAGCTATCAGACGTTTAAGAACAGCT
TGCGAAAAAGCCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTATCGA
GATCGATTCCCTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCAGAG
CAAGGTTTGAGGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAACCG
GTACAAAAAGCCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCATGA
AATCGTTTTGGTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGATGT
TACAAGATTATTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCAGAT
GAAGCTGTTGCATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGGCTC
AAAAGACGATGCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTTTAT
CACTTGGTATTGAGACAGCTGGAGgagtgatgacgtcactcatcaaaCGA
AACACCAAAATCCCATGCAATCAAGCTCAAACCTTCACAACGTACTCCGA
CAATCAACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTATGA
CCAAAGATAACCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCACCA
GCCCCAAGAGGTGTACCGCAGATCGAAGTTACTTTCGATATCGATGCTAA
TGGTATTTTAAATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATGCAC
ACATTACCATCAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGGATG
GTACAGGATGCTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGAACG
AGTGGATGCAAGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAAGCA
CTGTTGATGACTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAG
ACAATCCTCAAGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAATCA
GCTGGCATCAAAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGAACG
TTTGTCGACCCATCATGACCAAATTGCATCAAGGTGGAGCAACAGGAGCT
GGCCAATCCAACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGACTA
AACAAAGTATATTCAAGAGAACATTATACCTGAGTATacctataaaaaag
aaaaattatgatAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAGGAA
ACCATTATATTTatgtaaattttattgtttGATTTAAAGACATTGTATAT
TTCAAAAGAACtttgttgtaaaaaaaaatgaagttagtCTTCATTCAACC
ATTATTTAActcaaaagatttgaaaaaagaacAGTCGTAAAAGAACAagc
cattttgaaataaatattcATCTGTATTCTTATTGACCGTAAATTTCATA
CACCCTTccggaaaaattggccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006385-exon-sc0000067-1491911889:100336..100545 | TCONS_00006385-exon-sc0000067-1491911889:100336..100545 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1510915933:100336..100545 | TCONS_00006385-exon-sc0000067-1510915933:100336..100545 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1575043694:100336..100545 | TCONS_00006385-exon-sc0000067-1575043694:100336..100545 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1491911889:100737..101142 | TCONS_00006385-exon-sc0000067-1491911889:100737..101142 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1510915933:100737..101142 | TCONS_00006385-exon-sc0000067-1510915933:100737..101142 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1575043694:100737..101142 | TCONS_00006385-exon-sc0000067-1575043694:100737..101142 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1491911889:101919..103762 | TCONS_00006385-exon-sc0000067-1491911889:101919..103762 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1510915933:101919..103762 | TCONS_00006385-exon-sc0000067-1510915933:101919..103762 | Clytia hemisphaerica | exon |
| TCONS_00006385-exon-sc0000067-1575043694:101919..103762 | TCONS_00006385-exon-sc0000067-1575043694:101919..103762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:100336..103762 + |
Blast
BLAST of TCONS_00006385 vs. Swiss-Prot (Human)
Match: HS71L (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2) HSP 1 Score: 554.288 bits (1427), Expect = 0.000e+0 Identity = 275/405 (67.90%), Postives = 342/405 (84.44%), Query Frame = 2
Query: 938 NLFLSFYLQEIKRKHKKDITSNKRAIRRLRTACEKAKRTLSSTAQASIEIDSLFDGVDFFTSISRARFEELNSEMFKKTLEPVQKALADAKLDKSQIHEIVLVGGSTRIPKIRKMLQDYFNGKSLCNSVNPDEXXXXXXXXXXXILTGSKDDAVKDLLLIDVAPLSLGIETAGGVMTSLIKRNTKIPCNQAQTFTTYSDNQPGVSIQVFEGERSMTKDNHRLGEFELSGIAPAPRGVPQIEVTFDIDANGILNVTAKDKSTGKDAHITI--NKGRLSKDEVERMVQDAEKHRAEDEQQKERVDARNALEAYAFQMKSTVDDSNIKKKLSEGDQETILKKCQEVLQWIDGNQLASKEEFEHQKSELENVCRPIMTKLHQGGATG-AGQSNMSQG----GPTVEEVD 2131
N +S +++E KRKHKKDI+ NKRA+RRLRTACE+AKRTLSS+ QA++EIDSL++G+DF+TSI+RARFEEL +++F+ TLEPV+KAL DAK+DK++IH+IVLVGGSTRIPK++++LQDYFNG+ L S+NPDEAVAYGAA+QAAIL G K + V+DLLL+DVAPLSLG+ETAGGVMT+LIKRN+ IP Q Q FTTYSDNQPGV IQV+EGER+MTKDN+ LG F+L+GI PAPRGVPQIEVTFDIDANGILNVTA DKSTGK ITI +KGRLSK+E+ERMV DAEK++AEDE Q+E++ A+NALE+YAF MKS V D +K K+SE D+ IL KC E+L W++ NQLA K+EF+H++ ELE +C PI+TKL+QGG TG A + G GPT+EEVD
Sbjct: 237 NRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCADLFRGTLEPVEKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKVNKITITNDKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLYQGGCTGPACGTGYVPGRPATGPTIEEVD 641 HSP 2 Score: 345.895 bits (886), Expect = 5.021e-107 Identity = 162/208 (77.88%), Postives = 184/208 (88.46%), Query Frame = 1
Query: 1 NRTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFV 624
NRTTPSYVAF D ERLIGDAAKNQ AMNP NT+FDAKRLIGR F D VQ+D+KLWPF+V+N+ GKPK+ V +KGE K + PEEISSMVL+K+K+TAE +LG VT+AVITVPAYFNDSQRQATKDAGVIAGLNVLR++NEPTAAAIAYGLDK ER+VLIFDLGGGTFDVS+L ID+G+FEVK+T GDTHLGGEDFDNR+V HFV
Sbjct: 37 NRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISSMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGGQGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFV 244
The following BLAST results are available for this feature:
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