TCONS_00006410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006410
Unique NameTCONS_00006410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006410 ID=TCONS_00006410|Name=TCONS_00006410|organism=Clytia hemisphaerica|type=transcript|length=979bp
GCGATGGAGTGTGTTTTCAAGGTGATAAGGTGTAGAAATAACACTAGCTC
CGTCATTTTTACTCAGTAAAAAGTAATGTATTAACCTAACAAACTTTGTT
TCTTCTCGCAGAGTAGAAAGGTATTTCAACTGAAAGGATCATTTTCAGAA
AAGTTTTGATCAAAAACGCTCCAAAACGCACAATGTCGATGGAAATCTAT
ATTTTCTGCATATTGCTCTTATCTCGATGCACACTCATTTCAACGATGGT
CTTAAGAAGGGCTGTGATGAAAAATAGTTGGACTGAAATTTCCAGAACAT
GCATGCGAGATTTCGACGGAGTCATTCAGTTTTATACAAATGATGGCTTC
AGACCATGCACTGAGGAGATATGTCCATTGAAGGGTGACGCAGGCCCTTT
CGGTGAAGAGTGCCGCGTATGCTGTGTACATAAAAGGGATATCCTAGCTT
CAGGATCTAAATCATCGAACAAAACAAACGACGATGGAGCTTCATTCATT
CGAATTGAAACACGAACATTGGTGACTGTCATTTCTCTGACTACCATTTT
GTTTGTGATTGTCGTCGTTGCGTTTTGTTGCTACGTTCGAAGAATAAAAA
ATCAGCATCTATCGAAGCGAGTAACCGTTCGAGAACAACATTCGTTCATC
CAACCGTCGCTCGATTTCAACAAGAAATGCAACGTGCCGAGACCTGACCA
AACGTGTCAACAGAAGCCAACTAAAAATGGCGGACATAATGATGATGCCA
CTTTCTTTGTAAATATGTAAATATGGCATGAGTTTGTATTTCTAGttttt
aaacatatttttaaCATGGTTATCTTAATGATAATTAATacgttttaatt
ttaaaattttaaaattaaagttcTTTTTGAACGCATttgtaattttattt
catttttttttttaatattatataACATGGAAGATATTCaataaaacttc
aaaaaaaatgtaaaataaattgaaaagta
Run BLAST on NCBI

protein sequence of TCONS_00006410-protein

>TCONS_00006410-protein ID=TCONS_00006410-protein|Name=TCONS_00006410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MSMEIYIFCILLLSRCTLISTMVLRRAVMKNSWTEISRTCMRDFDGVIQF
YTNDGFRPCTEEICPLKGDAGPFGEECRVCCVHKRDILASGSKSSNKTND
DGASFIRIETRTLVTVISLTTILFVIVVVAFCCYVRRIKNQHLSKRVTVR
EQHSFIQPSLDFNKKCNVPRPDQTCQQKPTKNGGHNDDATFFVNM
Run BLAST on NCBI

transcript from alignment at sc0000067:250679..252449+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006410 ID=TCONS_00006410|Name=TCONS_00006410|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at sc0000067:250679..252449+ (Clytia hemisphaerica)
GCGATGGAGTGTGTTTTCAAGGTGATAAGGTGTAGAAATAACACTAGCTC
CGTCATTTTTACTCAGTAAAAAGTAATGTATTAACCTAACAAACTTTGTT
TCTTCTCGCAGAGTAGAAAGGTATTTCAACTGAAAGGATCATTTTCAGAA
AAGTTTTGATCAAAAACGCTCCAAAACGGTAAGTATTAACAAATTGTCCA
TCATTTTCCCGCGAAACAGGAACATGGAATGGGAATGCTGACACGATTCA
AATGCTCTCTTTCATCTTAAATATCCAGAATAAAAACTGCTTGCGTCATT
TAAAAACAATGACCATTGCATCAAAATGATGAGgcagtcatttaaaaaaa
aatattttagaaaccGCTAACAATCGAAactaaatttttacaattttact
aACTGCATAAAGATTCATACAGAAGCGATCCGGAACGCCCATATTTTACT
CGCACCCATTCCTATTCCACTCGTTGTAtgaaaatattacttttaaTTTT
CTCCCTTAGCACAATGTCGATGGAAATCTATATTTTCTGCATATTGCTCT
TATCTCGATGCACACTCATTTCAACGATGGTCTTAAGAAGGGCTGTGATG
AAAAATAGTTGGACTGAAATTTCCAGAACATGCATGCGAGATTTCGACGG
AGTCATTCAGTTTTATACAAATGATGGCTTCAGACCATGCACTGAGGAGA
TATGTCCATTGAAGGGTGACGCAGGCCCTTTCGGTGAAGAGTGCCGCGTA
TGCTGTGTACATAAAAGGGATATCCTAGCTTCAGGTAATAACTAAAGGTC
ATTTTCCCTTTGGATTCATGCATTTCATTTACGTTATTTAGAGATTCCTT
TCGAGCACTTTTTTGTCCCTAATCTAGATAATATACTGCCTTCCACTTAA
AGAGTCTTTTTCATGAAGGCCTCCCATTACCACGAGCAAATTGTttacat
tctttttcatttcacaGGATCTAAATCATCGAACAAAACAAACGACGATG
GAGCTTCATTCATTCGAATTGAAACACGAACATTGGTGACTGTCATTTCT
CTGACTACCATTTTGTTTGTGATTGTCGTCGTTGCGTTTTGTTGCTACGT
TCGAAGAATAAAAAATCGTAAGTACTCACTCTACTATTATTTAAGTTTTT
CCATGGTCAAATAGTGCGACATGTCATATTTGTCATAGGATATTCTATGC
AATATATTCAGTCATTTGATTCGATTCAACCCATTGTAGGGGGCCATTGT
AGCCCAATCAACGAAATATCTagatagtaatatttttttatttctacaag
GGCTTGTAGTAGCTTGTTATAAGTTAAGAATGATCTTCTATGCATCGTTC
GTTGAAAGAATCAATCTATTCAagtgatgtttttaatcattctAGAGCAT
CTATCGAAGCGAGTAACCGTTCGAGAACAACATTCGTTCATCCAACCGTC
GCTCGATTTCAACAAGAAATGCAACGTGCCGAGACCTGACCAAACGTGTC
AACAGAAGCCAACTAAAAATGGCGGACATAATGATGATGCCACTTTCTTT
GTAAATATGTAAATATGGCATGAGTTTGTATTTCTAGtttttaaacatat
ttttaaCATGGTTATCTTAATGATAATTAATacgttttaattttaaaatt
ttaaaattaaagttcTTTTTGAACGCATttgtaattttatttcatttttt
tttttaatattatataACATGGAAGATATTCaataaaacttcaaaaaaaa
tgtaaaataaattgaaaagta

Coding sequence (CDS) from alignment at sc0000067:250679..252449+

>TCONS_00006410 ID=TCONS_00006410|Name=TCONS_00006410|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000067:250679..252449+ (Clytia hemisphaerica)
ATGTCGATGGAAATCTATATTTTCTGCATATTGCTCTTATCTCGATGCAC
ACTCATTTCAACGATGGTCTTAAGAAGGGCTGTGATGAAAAATAGTTGGA
CTGAAATTTCCAGAACATGCATGCGAGATTTCGACGGAGTCATTCAGTTT
TATACAAATGATGGCTTCAGACCATGCACTGAGGAGATATGTCCATTGAA
GGGTGACGCAGGCCCTTTCGGTGAAGAGTGCCGCGTATGCTGTGTACATA
AAAGGGATATCCTAGCTTCAGGATCTAAATCATCGAACAAAACAAACGAC
GATGGAGCTTCATTCATTCGAATTGAAACACGAACATTGGTGACTGTCAT
TTCTCTGACTACCATTTTGTTTGTGATTGTCGTCGTTGCGTTTTGTTGCT
ACGTTCGAAGAATAAAAAATCAGCATCTATCGAAGCGAGTAACCGTTCGA
GAACAACATTCGTTCATCCAACCGTCGCTCGATTTCAACAAGAAATGCAA
CGTGCCGAGACCTGACCAAACGTGTCAACAGAAGCCAACTAAAAATGGCG
GACATAATGATGATGCCACTTTCTTTGTAAATATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003659XLOC_003659Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006410-proteinTCONS_00006410-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006410-exon-sc0000067-1491911889:250679..250856TCONS_00006410-exon-sc0000067-1491911889:250679..250856Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1510915933:250679..250856TCONS_00006410-exon-sc0000067-1510915933:250679..250856Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1575043694:250679..250856TCONS_00006410-exon-sc0000067-1575043694:250679..250856Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1491911889:251188..251462TCONS_00006410-exon-sc0000067-1491911889:251188..251462Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1510915933:251188..251462TCONS_00006410-exon-sc0000067-1510915933:251188..251462Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1575043694:251188..251462TCONS_00006410-exon-sc0000067-1575043694:251188..251462Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1491911889:251646..251795TCONS_00006410-exon-sc0000067-1491911889:251646..251795Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1510915933:251646..251795TCONS_00006410-exon-sc0000067-1510915933:251646..251795Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1575043694:251646..251795TCONS_00006410-exon-sc0000067-1575043694:251646..251795Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1491911889:252074..252449TCONS_00006410-exon-sc0000067-1491911889:252074..252449Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1510915933:252074..252449TCONS_00006410-exon-sc0000067-1510915933:252074..252449Clytia hemisphaericaexon
TCONS_00006410-exon-sc0000067-1575043694:252074..252449TCONS_00006410-exon-sc0000067-1575043694:252074..252449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:250679..252449 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.179721	0	0.102077	0	0.0981993	3.13954	4.9911	18.5591	67.7629	21.3795	8.77611	18.3858	24.9493	36.8897	31.7268	8.02449	10.352	30.9056	36.5944	1.87101	2.21635	7.97713	7.10828	11.0315	9.49217	12.5724	12.1365	15.6487	12.0879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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