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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006412 ID=TCONS_00006412|Name=TCONS_00006412|organism=Clytia hemisphaerica|type=transcript|length=1918bp
ATCAGGGAATTACCTGGTGGACACAAATTGATAAATTCTCGTGATCTCTC
GTTCAGTTAAAACATGATGAGTGAACTACTTCATACCAAAACCACTTGAA
ACTTCTTCAGATAAACACGTACAAAAATACTTCTCAACATGAAATTTGAT
ATCGTAATTGTGTTAACATCTGTCCTGTTACTGATATCGAGGCCCAGCCT
CGTTCTCACGCTGTCAATACCAACGGACACTTGGATCGATATTTCAGACA
TCTGTAAGATTGATTTTGAAGGGAACGTTCAATTTTATTCCAATGGAGGC
TTTCGCCAGTGCAATGATGAACTATGTCCCATGGAAAGCGATCCTGGACC
TTTTGGGAAGGACTGCCGTGCGTGTTGTATCAATGAAAGACACAAGTTGA
AGTCAGAATCAAAATCACGACGACAATGTCGAAGAGCTGGTTCGAAAGAA
TCCAATACTTCCAGTACGTCCCAAATCAGAGAAGACGTATCAGTCAAGAA
ACTTGGCGTGAAAGACAGCGTACTGACAATAAGCAATGGAACTTTCGAAC
TTGTAACAAGCAGGCCAAGCATTCGTAACATACCGGGTATAAAAAAAGAC
AAACCGAAACAAAATTCAACGGCAATTGTGGAGGAGACAGAAACAAATTC
ACTTTTGGACTCGAATGCAACGACGAATGTATAGGTCTTTGTGCTGGCTG
GTGGACTTCTTGTATATAAAACATAAGCATGTTGGTGTTATTGTAAATAA
TTGTAAAATTATAATGTTGAAATTTTTGTACTTTGTTGTAGTTGAGTTGT
TGGGTGTCAGAATTTTACCGACGCTTGAACACTGACGAAACGTGCTAGCA
AAGCTAAACACCCTCCCCTTCTCACTAAGCTTACCCTTCTTAGCaatgaa
ctttttgaaattcgTATAATAAATAGTCTAGGGAAAACAGAGTTTTTAAA
ATGGCTCATAATGATAATTATTTAAGTACCTACAGTAGTGGAGTCTCTTC
AACGCGAACCTCCACGTACTCCACTTTTTCCTTATATATTAACTTGGACA
TGTTTTGTCGCCCCTGATTTAACAATGCTAATCTCAACAACTTAAACTCA
AATAAATCTCctttgcaaaaagtttatgTTCCCCGttcgtgttcgagtta
tggaggccCCATTTTATCATTATGAATTAACTTGTAGAAGATTATTGGTt
cagcgcgcagcagaatggacctttaaaaagcaactgatcgaaaagatttt
gtctttgtcggggcctgtgcgcgcaataaattaacaagtccaggctaaac
caactgccgatctagaatttttgccccgccgACCCgcacgatgtttgacc
tatgttttggattgaattggtagtagagtcaaatttctcggttagattaa
agggtatTCTTTCAAAtagggtcaggtagggttagggctagggttgggga
tgggagttaacccctggttagggttttagctcccgggtagagtttggagt
aaataccatgtttataaggaactttgaactcctttgtgcagttgtgactc
gatggccgagtggttaaggcgctggcgttctaatTATAGGTGCTTTAtat
atagtgggttcgaatcccatcagcggcaaaagtttcgagatttcgggaaa
tgcatcaaaaactatcaaaatttaGCAATACAAataaagtgtcaaagaat
agaagctcagagtggaggatgggaaggaaatttttttgcatcacttaagg
aacccggtacgaacgacattcggttattgccacgtcagctggaccttcac
gccgctccggcttcttgtatatattttatgcatttttgaagaTGCGTTTT
TAAATTTAACTGAGTTTTTTTGgttaataatgtttttaaaaaaaatcagg
aaaaaatgtataataaaa Run BLAST on NCBI transcript from alignment at sc0000067:253888..256437+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006412 ID=TCONS_00006412|Name=TCONS_00006412|organism=Clytia hemisphaerica|type=transcript|length=2550bp|location=Sequence derived from alignment at sc0000067:253888..256437+ (Clytia hemisphaerica)
ATCAGGGAATTACCTGGTGGACACAAATTGATAAATTCTCGTGATCTCTC
GTTCAGTTAAAACATGATGAGTGAACTACTTCATACCAAAACCACTTGAA
ACTTCTTCAGATAAACACGTACAAAAATACTTCTCAACATGAAATTTGAT
ATCGTAATTGTGTTAACATCTGTCCTGTTACTGATATCGAGGCCCAGCCT
CGTTCTCACGCTGTCAATACCAACGGACACTTGGATCGATATTTCAGACA
TCTGTAAGATTGATTTTGAAGGGAACGTTCAATTTTATTCCAATGGAGGC
TTTCGCCAGTGCAATGATGAACTATGTCCCATGGAAAGCGATCCTGGACC
TTTTGGGAAGGACTGCCGTGCGTGTTGTATCAATGAAAGACACAAGTTGA
AGTCAGGTAACAATAAATGGAAAATTGAGTCATTGATTTCGTTGAAGGCT
CTAAAGAAGCTCTTTACAAATTACTCTGATGCGGTTTGACAATTTTCCTA
TGTCAGGTTGTTAGATTCTGTTCAAAGCAATCAAAACTCTTTATCTCCCA
TTGAAAAGGAATCAAGCGGAAACTATAGTTCATTTCCACTTTTTGTTTAT
TGGGGTATACTTTTGCTAGCTTTACTTAGTCTAGCACTTTTTGATCTATC
TTTTCCCATAGCTGACAGATTTGTCCGTTCTGAAGAACAGTCAGGATGTG
AAGGCAACTCGGTGGAATCGAACGGTGAAAAACAGATGATCATCATAGTG
TTGGGGGTTGTTGTTTGCTTGTTATCTCTTTGCATTATCATCATGGTTGT
CATAACCATTCGAAAAAGTAAAACTATTCTTCTCTTCAAAAGTCTGAGAA
TCTTTCAGCTCGTTTGggaggtcaaacattttcagaAATGTTAACAAATT
GGCAGCACTGATCATAGGATCAATAATGATCAAAATAATCTTTTCTGTCT
CCTTGCGTCATCACCACCATTAGAGGACAGCTAATATCAGTTTGATTAGA
ATATTTCATATCTATTTTTTTTCTCGTCAATTCGCCAGAATCAAAATCAC
GACGACAATGTCGAAGAGCTGGTTCGAAAGAATCCAATACTTCCAGTACG
TCCCAAATCAGAGAAGACGTATCAGTCAAGAAACTTGGCGTGAAAGACAG
CGTACTGACAATAAGCAATGGAACTTTCGAACTTGTAACAAGCAGGCCAA
GCATTCGTAACATACCGGGTATAAAAAAAGACAAACCGAAACAAAATTCA
ACGGCAATTGTGGAGGAGACAGAAACAAATTCACTTTTGGACTCGAATGC
AACGACGAATGTATAGGTCTTTGTGCTGGCTGGTGGACTTCTTGTATATA
AAACATAAGCATGTTGGTGTTATTGTAAATAATTGTAAAATTATAATGTT
GAAATTTTTGTACTTTGTTGTAGTTGAGTTGTTGGGTGTCAGAATTTTAC
CGACGCTTGAACACTGACGAAACGTGCTAGCAAAGCTAAACACCCTCCCC
TTCTCACTAAGCTTACCCTTCTTAGCaatgaactttttgaaattcgTATA
ATAAATAGTCTAGGGAAAACAGAGTTTTTAAAATGGCTCATAATGATAAT
TATTTAAGTACCTACAGTAGTGGAGTCTCTTCAACGCGAACCTCCACGTA
CTCCACTTTTTCCTTATATATTAACTTGGACATGTTTTGTCGCCCCTGAT
TTAACAATGCTAATCTCAACAACTTAAACTCAAATAAATCTCctttgcaa
aaagtttatgTTCCCCGttcgtgttcgagttatggaggccCCATTTTATC
ATTATGAATTAACTTGTAGAAGATTATTGGTtcagcgcgcagcagaatgg
acctttaaaaagcaactgatcgaaaagattttgtctttgtcggggcctgt
gcgcgcaataaattaacaagtccaggctaaaccaactgccgatctagaat
ttttgccccgccgACCCgcacgatgtttgacctatgttttggattgaatt
ggtagtagagtcaaatttctcggttagattaaagggtatTCTTTCAAAta
gggtcaggtagggttagggctagggttggggatgggagttaacccctggt
tagggttttagctcccgggtagagtttggagtaaataccatgtttataag
gaactttgaactcctttgtgcagttgtgactcgatggccgagtggttaag
gcgctggcgttctaatTATAGGTGCTTTAtatatagtgggttcgaatccc
atcagcggcaaaagtttcgagatttcgggaaatgcatcaaaaactatcaa
aatttaGCAATACAAataaagtgtcaaagaatagaagctcagagtggagg
atgggaaggaaatttttttgcatcacttaaggaacccggtacgaacgaca
ttcggttattgccacgtcagctggaccttcacgccgctccggcttcttgt
atatattttatgcatttttgaagaTGCGTTTTTAAATTTAACTGAGTTTT
TTTGgttaataatgtttttaaaaaaaatcaggaaaaaatgtataataaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006412-exon-sc0000067-1491911889:253888..254293 | TCONS_00006412-exon-sc0000067-1491911889:253888..254293 | Clytia hemisphaerica | exon |
| TCONS_00006412-exon-sc0000067-1510915933:253888..254293 | TCONS_00006412-exon-sc0000067-1510915933:253888..254293 | Clytia hemisphaerica | exon |
| TCONS_00006412-exon-sc0000067-1575043694:253888..254293 | TCONS_00006412-exon-sc0000067-1575043694:253888..254293 | Clytia hemisphaerica | exon |
| TCONS_00006412-exon-sc0000067-1491911889:254926..256437 | TCONS_00006412-exon-sc0000067-1491911889:254926..256437 | Clytia hemisphaerica | exon |
| TCONS_00006412-exon-sc0000067-1510915933:254926..256437 | TCONS_00006412-exon-sc0000067-1510915933:254926..256437 | Clytia hemisphaerica | exon |
| TCONS_00006412-exon-sc0000067-1575043694:254926..256437 | TCONS_00006412-exon-sc0000067-1575043694:254926..256437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:253888..256437 + |
Blast
The following BLAST results are available for this feature:
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