TCONS_00006424 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006424
Unique Name	TCONS_00006424
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	5321

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000067:319958..326948+

transcript sequence

>TCONS_00006424 ID=TCONS_00006424|Name=TCONS_00006424|organism=Clytia hemisphaerica|type=transcript|length=5321bp
NACAAGCAATATTTATTATCCGATGAAATCCTCGGCAAGGGCAGCTTCTC
AATTTGCAAGAAATGCGTCGATCGTAAAACGAACTTAGAATACGCTGTCA
AAATTATGACCAGAAGAGCGGACCGCAATACGGAAATCCAATCGTTGAGG
ATGGCACAAACCCATCCAAATGTCGTCAAAATTCACGAGCTCCACGAGGA
CGagCTGCATGTCTATCTGGTGATGGAGTACCTCCGTGGAGGAGAATTGT
TGGAACGAATCAAAAGTAAACGAAGTTTCTCAGAAACCGAAGCGTGTGAT
ATCATGAGAAAACTCGTCTCCGTCGTCAAATTTCTTCATAAAATCGGAGT
CGTGCATAGAGATCTTAAACCAGAGAATCTGCTGTTCACTGACAAGACCG
AAAGCGCACAATTAAAACTGGTGGATTTTGGATTCGCCAAGGTCAAAGGC
AGTAAACCGATGCAGACACCCTGTTTCACTTTATCTTATGCGGCgccaga
aattttgaaaaatgcgaCCGGTGAAAATAAACCCAGTAGTTACGATGAGT
CGGTGGATATTTGGAGTTTGGGTGTTATTCTGTATACAATGTTATCAGGG
AAGGTTCCCTTTCAACCGAAACAATACACGAACCAATCAGCGATCGGCAT
CATGAAGAGTATCATGCAAGGTGAAGTTTCGTTCAACGGAGAAGAATGGA
GGGATGTCTCGCTCTCTGCAAAAGGACTTATTCAAGGTTTGCTGAGAGTG
GACCCAACCAAGCGAATGACAGTTGAAGATATTTTATCGCATGAATGGAT
CACAGGGCGTATCGAAATGCCTACAACGCCCCTTAGAACGCCAAACATTC
TCGATTCTTCTGGAAACTTCGTTGGAAAGGCATTTCAAGTTGCGTTGAAC
GCTTATCACAAAGCCGCCCGAACGGTGACGCTCATGGACGTCGCGAGTGC
GCCGCTCGCTAAGAGGCGGAAAATGAAACATTCCTCACATGATCGTTCCC
CTTCAACCGGCTCTTcagggtcggaaaaatcggaTTTGAGTTCCATCGAT
TTGAAAGAACATTTAAACAGCGGAGGAAGTCGAAAACGAAAAATGGAGGA
GTTGACGTCCAGCTCAACGATCACTTCAGCTCAAGGATTGAACACGACAA
ACCAGGAAGTGTATGACCGATCTCATCTGCAGCTTTCGTTAAACAAGCCA
ACTGTTCCTTCTGGTAACACGGCCACTGGACCGTCTCCCGTCTCAACCAA
GGGCCTCTCTAGTGCCACAACGAGCACcgcaaatattcaaaatctacaaA
CTAACATTTCTACGACGAATAGCATGGTCAATTTATCCAACTTTACGACT
GCATACATTTCATGTAATAATAAAGCACAGACTTTCTCACAAGCTGCCAC
CAATTACTTACCACCCACCTACCAGCAAGCAACGAGCTCGCAACAGGTCG
TTCAAACCATCCCACGTCAATCATATCAACCACAACCAGCAACAGGGGTC
ATAgcacgacaacaacaacaaaataacTTTCAACAACCTCATTTTCTACA
GCCATCCACGTTACCTCAACACACAATCCAAGTTTGTAGTGGTGGTGGCG
TTTCCGGATATCCACAACACCCGCTTCCACCAATGAACAATATGTCCCCA
ATAAATCCAACGGGCTTAACGCGGAATATGCAAATGCAGCCTTCACAAAT
ACCACATAATTATCCATACATGAATCAAATTAGTCAGCAACCTGTCAATC
AAATCAGTCAGCAACCTGTCAATCAAATCAGTCAGCAACCTGTCAATCAA
ATGATATCCATGCAACCTCGACACACGAACGTAACAAACTTTCCAGTCAA
CCAAACTCTAGTACAACCACCGCCAAGTGGCTACGTTTCCACAATTACGC
TAAAACAAGACCCACAGTACGGTATACCTACCACCTACCCCGTTCAGCAA
ACTTTGAGTGGCGCTATGCCACCGCAAGGTGCACCCAGCACCGGATATAA
CGCCCTATGTACTCCATGGGTGGATCATCCCGCCACGACGGGAACATGGT
CAAACTCTAAGCTACCGACGGGCGTTCAACCCGCCCAATATCAGAATAAC
ACTCCTTGGAGTAAAAGCGATGACGGAAATAACAATGTTTTACCGCCTCT
GTACCAAAATCAACAATCTAGTCACTCTACAGGTGGTGGTGGTGGGCCCA
CGGGTTAAGCTTGATTGAGATTACATTTTCCATTTACTTTGTTGTCTGTT
GCTAAATTATGCTTTTATAATGAGAAATAAGATGAAATTAACTGTGAACT
TAATCTTCACTTAAGTTAGATCCTTCAATGGAATGGTAACACTGTTTCTC
CAAAGCACACGATGGTTTGTTTCTTTCTCTAATCTAtctcttttctattt
tgtttttctacccgaatgatttcaatatttttttatactttcaattgttt
ttttatgaattttaaaattctttcttctttgtgtaaatattttaatgact
tttataaaattatacGAAAATGGTATAACTTATGCTTTAACTTCtgtaga
aaaaataatatgacTCTTCTATCATGAAATTATAATCTTTCGTAAAAACA
TATTAAGTAAAACTTCGTAGCAAACATAATAAGCAAAGATGGGACTTTTA
AGTCAACCAGGCTctgcaaaagaaaaatattgtcccaaaaaactagccaa
cttttGGAAAGTTAGAAGCCTACCTTAGCaacttatttcaaaattgtagG
AAAGTAGATTTTATGACTTAGGATATTTCAAAGGGAGCAGTGCtttcttt
ttattgtttattgatAAAGACAAAAATTAGGAGCTTTACAAAAATGTAAA
TAGATCaggcaatatttttcaaaataaaatacaaagtaGATATTATGTCA
ATAATTCTTCTCAAGCTTTCCTTCCTATCTTCCACTCATACTTAACACCA
AACTGGGAAATCTACACAAGAAAATACACAATTATTTTTCTCCGAGCATT
TGATTATAGCTGGCATGAACAGTGTACAATATTCGTACTTCCTAAAGGCc
agggcaaaccgatccaacatgcctttttttctgatgttggatgaaatcTT
GGACCGGTTTgcgtcaattcaaatttttggaaaaagatgaaaattcaaaa
aaagaagaaaaaaatcgtgttggacggtgttggatgaagtttgatcgcca
tcaaacatttcatccaacatttgcggcgagatcaaagaagctctctcatt
gaattgtgtaattttccgtgttggattggtttggtggtacttttttcttt
atttttttgaattttcattttttttcaagtcatgccggatgaaatgttgg
atcggtttgccccggccttgatttttgcttcatccaacgcaagtttttcc
atccaacatttcatccaacattggaaaatcacgttggatgaaatgttgga
ctggtttgccctggccCTAACCTAGGTTTCAACCTGATTGCAACATTGTG
AAACGTACTTATCTTTGTcaaagcgaccgtagtgcagtggtagagcatcc
ggctacggtgcgcaaggttgtgggttcaaccctcagccgggtcataccaa
agattcccaaaatggtacttgatatcTCTGCtagatgctcagcaattaag
agaaggatcaagggtaagtggagcaatccagggagaaagagtggcgccct
cccctaccttcgggtagacagctatcgaaagaggagccttcgggtcacct
ccgactgcggtcgcagacttacttacttactatctTTGTCATGTCAAGGT
TGACGAATCAGGCTAACTAACGGATAAGTGCTGAAAAGGGGCCACGaaca
cagatctgtaaagcccgaagggctagatttgcggcttttatcgaaaagtg
aagcctaggtttggaaggatttcctaccaaagtcacgtgactaaaatatg
NNacgctccgaaaacaattaaaatgctagatcctatccatcggcgcgaaa
tttaaaaagtcaaatttttgcttcacttttttttgctggagaaagcttaa
agttgcctatatagcccttcgggctttacagatatctgtggccACGAAGG
CTAGATGGACCCCAATTCCTCACGGACTAAACTCAGTCTCTTCCCGAACT
ACGGAAGTACAAACCGAGTACGGAGAATTTTTTCGTGCAATTATCCGAGA
GCCagcaaaaaatttagaaatattactACAACGTATAATGAATCCTCATT
TTGTACGTCATTTGATTTCATTATCTTGTCTATTTGTGCTTTCCGGCGTT
AACATCTCTCGTAGACTATGCtatcgaaaaataaagaataacctCAAACA
CGCAAATTAGCAATCGGGCGGAAATTTTGTCCGCGTGAGCGAAAAATAAT
CGGAGGGGCTCTATTTTCCGCCACgtaacatattacgttttataatatac
aactaTGTTATATCGTAATATCATAATGATATATAACACGAACGATAGCA
TTGTCTACGTCTCTCGATGTTTCGTTTCACCATTGTTTTCGTGTCGTCTT
TTGCCAGGAAAACCGGAAAagcaatttagaaaaaatattacagTTGACTT
TTTTTGTGAAACTTAACTAACTTCAAATGAGCCGAGGTCAAATTCGAAAA
ATGCTACCATTTTATTCTCACACACCCACATCAAAAACTCGTTCCCAAAG
CGTAACttcatttctaaaattttccacATGGTGTGAAATTGGGCGCACGG
CCCACCAATGTCTTATTAAATAATAAAAACTTGTGGTCTGAAACTCAACA
AATTGCTGCCCCTCTAATCTCTATCAATTAGAATTGGATAATTTTTGCAA
CTTGATCAACTATATTCAATCCTCTTGAACGAAAAGCATCGAACCAAGTG
AAGCATCAGTTTGTTCGGCCATCCTCAACTCCAACCCTGAAATCTCAACA
ACATATCCTCTCAACGTTTCACTCGCTCTTAGTGCTCCACCAGTACCCAC
AATCCTTTGCACGTCGTGTTTCCGAAGAAAGTCTACCGACATCATTCGAA
ACATGTTCTCAATTATTCCTCGGCTCATTCCTGCAACAATGTTTCCGAGG
GAAAGGTTATCGGGTCGAATGTTTCGCACCGATGCTGAAAGTTTCGGGTC
GTGCCGCTCGCCAAAAATTGTGGGTGAAATTTCCAGGAGGGATGTACCAG
CATCTGTTTGTAATTGGTTGAATTTTATTAAGACTTCGCTGGATGAGGGT
ACGTTCTGACATTCGAGGTCGGTCATCCATGAAACGAGAGAGGTGGCTAA
TTGATGCAAAACATTCCctcc

Run BLAST on NCBI

transcript from alignment at sc0000067:319958..326948+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006424 ID=TCONS_00006424|Name=TCONS_00006424|organism=Clytia hemisphaerica|type=transcript|length=6991bp|location=Sequence derived from alignment at sc0000067:319958..326948+ (Clytia hemisphaerica)
NACAAGCAATATTTATTATCCGATGAAATCCTCGGCAAGGGCAGCTTCTC
AATTTGCAAGTAAGCTATCATgttcaaattctttttcattgTCATGTTTT
AGCATGGAAAGATTAAATCTCAACGTTTTTGTTGGATAATGGCGAATATT
TTCTTAGTTTCTTTAACGGTCTCTTGTTTCTTCTGTTTCAGGAAATGCGT
CGATCGTNTTGTTTTTGTTGGTTAATGGCGAATACTTTCTTAGTTTCTTT
AACGGTCCCTTGACACACCTGTTTCTTCTGTTTCAGGAAATGCGTCGATC
GTAAAACGAACTTAGAATACGCTGTCAAAATTATGACCAGAAGGTAATAC
ttgaaagaaacttttaattTATGATTGTGATTTCTTATTTGCATCTATTT
TATTTCACAATATTGTTGTCGCTTTGCTTTTAGAGCGGACCGCAATACGG
AAATCCAATCGTTGAGGATGGCACAAACCCATCCAAATGTCGTCAAAATT
CACGAGCTCCACGAGGACGaggtataaaaaatatttcctaaaGGTGTTTT
CCTCCATGCAAAGCTTAAAATCCTTTTTCATCGTAGACCATTTATTTATG
CCACTTTATTTCTAACAATAGGAATTTAGCTTTTAGTGAGGAAAATCGCT
CAATTAataaatttcatcaaaagtcaagctttattttgattttaatttac
atttcaaaaatcattcACTCAATAAACCATCATGAcaatttttccacttt
tttctTCCAGCTGCATGTCTATCTGGTGATGGAGTACCTCCGTGGAGGAG
AATTGTTGGAACGAATCAAAAGTAAACGAAGTTTCTCAGAAACCGAAGCG
TGTGATATCATGAGAAAACTCGTCTCCGTCGTCAAATTTCTTCATAAAAT
CGGAGTCGTGCATAGAGATCTTAAACCAGAGGTAACCGACTCCTCGCTTc
tgtttttattatcaaatctACAGTACCCTTTCGATATAATCTTCGAGAAG
AGATGTTACGCCAtgatgaaaacattaaactctGCCAAACTCTAAAGGCC
tttctccactttcgcgcgaaatgggcgacagtttttttcttagccttttt
tgcctgaagaaaatatTGCGTCATAAAAGTtttgcgcgaacaaaaaaaaa
gttgaaggaagttctacttttttcatccgttacgtcaatttcgaccaatg
gaattgcttcatttttcaaccgaccaatgaccttacaaaaacgtcaaaaa
gttttcgctcatgtcgtgGTAAAGGTAAAGTGGAGACAGGAATTGAGTAT
CAATCAGTTTATGAAAACCCTTCTATTTCTCAGGGAAAAGGtttaacttt
catcatcataCAACATACTTCTTCCGTAATAACAGATGAATTCTTATAGC
TCCAATGTTTTCATTGGAGCGACCGTTGCGAATAAAAGCTTCTAAGCCag
ctgtttaatttttttttatcatatagtttttcttttttctccaaACATGT
ATTTTAGAATCTGCTGTTCACTGACAAGACCGAAAGCGCACAATTAAAAC
TGGTGGATTTTGGATTCGCCAAGGTCAAAGGCAGTAAACCGATGCAGACA
CCCTGTTTCACTTTATCTTATGCGGCgccagaaattttgaaaaatgcgaC
CGGTGAAAATAAACCCAGTAGTTACGATGAGTCGGTGGATATTTGGAGTT
TGGGTGTTATTCTGGTAAGTTGTGTTGCGTTTGAATCCATCACACATAAT
ATATACTATTCTAGAATTTTTGAGTAATAATTTCTTACAAGCAGGTCTGG
AACTAGGAGCTCCGCGACTCATACTGCCCTGTTTTCTTACCCCCACCCAA
AGTCCAgattaacatttttttcttggTTAATAATATTTGTTAAGACACTT
AATTTCTTAAACAAGTTTCATTTGTCTCACTTAGTTGCTTCCACTTTTTA
ATATTTGATAGCCTACCACATTTGTTTATGTGAATCTCTaccaataaaaa
caaatttcactttttccaTTCAGTATACAATGTTATCAGGGAAGGTTCCC
TTTCAACCGAAACAATACACGAACCAATCAGCGATCGGCATCATGAAGAG
TATCATGCAAGGTGAAGTTTCGTTCAACGGAGAAGAATGGAGGGATGTCT
CGCTCTCTGCAAAAGGACTTATTCAAGGTTAGTTTCTTAACAACGCTCTT
TCTTCTCTCAACTTTTCGAGGACCATGCACCAGCCAGGTACACAGATGGA
AAAAATGGTGATGCACCTCAAAAGATCTCTTTTTTAACATCTGAGTGGAA
TTGAATCTTCAATCTAGTCAAGTAAAAATACCAAATGTACCGATGAAGTA
TAATACTCGTTCTTATCTTAGCCAATTAGATTGACgtattttactttttc
tctCAGGTTTGCTGAGAGTGGACCCAACCAAGCGAATGACAGTTGAAGAT
ATTTTATCGCATGAATGGATCACAGGGCGTATCGAAATGCCTACAACGCC
CCTTAGAACGCCAAACATTCTCGATTCTTCTGGAAACTTCGTTGGAAAGG
CATTTCAAGTTGCGTTGAACGCTTATCACAAAGCCGCCCGAACGGTGACG
CTCATGGACGTCGCGAGTGCGCCGCTCGCTAAGAGGCGGAAAATGAAACA
TTCCTCACATGATCGTTCCCCTTCAACCGGCTCTTcagggtcggaaaaat
cggaTTTGAGTTCCATCGATTTGAAAGAACATTTAAACAGCGGAGGAAGT
CGAAAACGAAAAATGGAGGAGTTGACGTCCAGCTCAACGATCACTTCAGC
TCAAGGATTGAACACGACAAACCAGGAAGTGTATGACCGATCTCATCTGC
AGCTTTCGTTAAACAAGCCAACTGTTCCTTCTGGTAACACGGCCACTGGA
CCGTCTCCCGTCTCAACCAAGGGCCTCTCTAGTGCCACAACGAGCACcgc
aaatattcaaaatctacaaACTAACATTTCTACGACGAATAGCATGGTCA
ATTTATCCAACTTTACGACTGCATACATTTCATGTAATAATAAAGCACAG
ACTTTCTCACAAGCTGCCACCAATTACTTACCACCCACCTACCAGCAAGC
AACGAGCTCGCAACAGGTCGTTCAAACCATCCCACGTCAATCATATCAAC
CACAACCAGCAACAGGGGTCATAgcacgacaacaacaacaaaataacTTT
CAACAACCTCATTTTCTACAGCCATCCACGTTACCTCAACACACAATCCA
AGTTTGTAGTGGTGGTGGCGTTTCCGGATATCCACAACACCCGCTTCCAC
CAATGAACAATATGTCCCCAATAAATCCAACGGGCTTAACGCGGAATATG
CAAATGCAGCCTTCACAAATACCACATAATTATCCATACATGAATCAAAT
TAGTCAGCAACCTGTCAATCAAATCAGTCAGCAACCTGTCAATCAAATCA
GTCAGCAACCTGTCAATCAAATGATATCCATGCAACCTCGACACACGAAC
GTAACAAACTTTCCAGTCAACCAAACTCTAGTACAACCACCGCCAAGTGG
CTACGTTTCCACAATTACGCTAAAACAAGACCCACAGTACGGTATACCTA
CCACCTACCCCGTTCAGCAAACTTTGAGTGGCGCTATGCCACCGCAAGGT
GCACCCAGCACCGGATATAACGCCCTATGTACTCCATGGGTGGATCATCC
CGCCACGACGGGAACATGGTCAAACTCTAAGCTACCGACGGGCGTTCAAC
CCGCCCAATATCAGAATAACACTCCTTGGAGTAAAAGCGATGACGGAAAT
AACAATGTTTTACCGCCTCTGTACCAAAATCAACAATCTAGTCACTCTAC
AGGTGGTGGTGGTGGGCCCACGGGTTAAGCTTGATTGAGATTACATTTTC
CATTTACTTTGTTGTCTGTTGCTAAATTATGCTTTTATAATGAGAAATAA
GATGAAATTAACTGTGAACTTAATCTTCACTTAAGTTAGATCCTTCAATG
GAATGGTAACACTGTTTCTCCAAAGCACACGATGGTTTGTTTCTTTCTCT
AATCTAtctcttttctattttgtttttctacccgaatgatttcaatattt
ttttatactttcaattgtttttttatgaattttaaaattctttcttcttt
gtgtaaatattttaatgacttttataaaattatacGAAAATGGTATAACT
TATGCTTTAACTTCtgtagaaaaaataatatgacTCTTCTATCATGAAAT
TATAATCTTTCGTAAAAACATATTAAGTAAAACTTCGTAGCAAACATAAT
AAGCAAAGATGGGACTTTTAAGTCAACCAGGCTctgcaaaagaaaaatat
tgtcccaaaaaactagccaacttttGGAAAGTTAGAAGCCTACCTTAGCa
acttatttcaaaattgtagGAAAGTAGATTTTATGACTTAGGATATTTCA
AAGGGAGCAGTGCtttctttttattgtttattgatAAAGACAAAAATTAG
GAGCTTTACAAAAATGTAAATAGATCaggcaatatttttcaaaataaaat
acaaagtaGATATTATGTCAATAATTCTTCTCAAGCTTTCCTTCCTATCT
TCCACTCATACTTAACACCAAACTGGGAAATCTACACAAGAAAATACACA
ATTATTTTTCTCCGAGCATTTGATTATAGCTGGCATGAACAGTGTACAAT
ATTCGTACTTCCTAAAGGCcagggcaaaccgatccaacatgccttttttt
ctgatgttggatgaaatcTTGGACCGGTTTgcgtcaattcaaatttttgg
aaaaagatgaaaattcaaaaaaagaagaaaaaaatcgtgttggacggtgt
tggatgaagtttgatcgccatcaaacatttcatccaacatttgcggcgag
atcaaagaagctctctcattgaattgtgtaattttccgtgttggattggt
ttggtggtacttttttctttatttttttgaattttcattttttttcaagt
catgccggatgaaatgttggatcggtttgccccggccttgatttttgctt
catccaacgcaagtttttccatccaacatttcatccaacattggaaaatc
acgttggatgaaatgttggactggtttgccctggccCTAACCTAGGTTTC
AACCTGATTGCAACATTGTGAAACGTACTTATCTTTGTcaaagcgaccgt
agtgcagtggtagagcatccggctacggtgcgcaaggttgtgggttcaac
cctcagccgggtcataccaaagattcccaaaatggtacttgatatcTCTG
Ctagatgctcagcaattaagagaaggatcaagggtaagtggagcaatcca
gggagaaagagtggcgccctcccctaccttcgggtagacagctatcgaaa
gaggagccttcgggtcacctccgactgcggtcgcagacttacttacttac
tatctTTGTCATGTCAAGGTTGACGAATCAGGCTAACTAACGGATAAGTG
CTGAAAAGGGGCCACGaacacagatctgtaaagcccgaagggctagattt
gcggcttttatcgaaaagtgaagcctaggtttggaaggatttcctaccaa
agtcacgtgactaaaatatgNNacgctccgaaaacaattaaaatgctaga
tcctatccatcggcgcgaaatttaaaaagtcaaatttttgcttcactttt
ttttgctggagaaagcttaaagttgcctatatagcccttcgggctttaca
gatatctgtggccACGAAGGCTAGATGGACCCCAATTCCTCACGGACTAA
ACTCAGTCTCTTCCCGAACTACGGAAGTACAAACCGAGTACGGAGAATTT
TTTCGTGCAATTATCCGAGAGCCagcaaaaaatttagaaatattactACA
ACGTATAATGAATCCTCATTTTGTACGTCATTTGATTTCATTATCTTGTC
TATTTGTGCTTTCCGGCGTTAACATCTCTCGTAGACTATGCtatcgaaaa
ataaagaataacctCAAACACGCAAATTAGCAATCGGGCGGAAATTTTGT
CCGCGTGAGCGAAAAATAATCGGAGGGGCTCTATTTTCCGCCACgtaaca
tattacgttttataatatacaactaTGTTATATCGTAATATCATAATGAT
ATATAACACGAACGATAGCATTGTCTACGTCTCTCGATGTTTCGTTTCAC
CATTGTTTTCGTGTCGTCTTTTGCCAGGAAAACCGGAAAagcaatttaga
aaaaatattacagTTGACTTTTTTTGTGAAACTTAACTAACTTCAAATGA
GCCGAGGTCAAATTCGAAAAATGCTACCATTTTATTCTCACACACCCACA
TCAAAAACTCGTTCCCAAAGCGTAACttcatttctaaaattttccacATG
GTGTGAAATTGGGCGCACGGCCCACCAATGTCTTATTAAATAATAAAAAC
TTGTGGTCTGAAACTCAACAAATTGCTGCCCCTCTAATCTCTATCAATTA
GAATTGGATAATTTTTGCAACTTGATCAACTATATTCAATCCTCTTGAAC
GAAAAGCATCGAACCAAGTGAAGCATCAGTTTGTTCGGCCATCCTCAACT
CCAACCCTGAAATCTCAACAACATATCCTCTCAACGTTTCACTCGCTCTT
AGTGCTCCACCAGTACCCACAATCCTTTGCACGTCGTGTTTCCGAAGAAA
GTCTACCGACATCATTCGAAACATGTTCTCAATTATTCCTCGGCTCATTC
CTGCAACAATGTTTCCGAGGGAAAGGTTATCGGGTCGAATGTTTCGCACC
GATGCTGAAAGTTTCGGGTCGTGCCGCTCGCCAAAAATTGTGGGTGAAAT
TTCCAGGAGGGATGTACCAGCATCTGTTTGTAATTGGTTGAATTTTATTA
AGACTTCGCTGGATGAGGGTACGTTCTGACATTCGAGGTCGGTCATCCAT
GAAACGAGAGAGGTGGCTAATTGATGCAAAACATTCCctcc

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003663	XLOC_003663	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000067	supercontig	sc0000067:319958..326948 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.060243	0	0	0.261785	0	0	0	0	0.213994	0.397423	0.226519	0.212008	0.15554	0.297081	0.0368559	0.155782	0.299676	0	0	0.310853	0.0996878	0.190001	0.192648	0.197584	0	0	0	0.453795	0.189178	0.196309

Blast

[Close]

BLAST of TCONS_00006424 vs. Swiss-Prot (Human)
Match: KS6A5 (Ribosomal protein S6 kinase alpha-5 OS=Homo sapiens GN=RPS6KA5 PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.196e-105
Identity = 179/328 (54.57%), Postives = 237/328 (72.26%), Query Frame = 1

Query:   16 LSDEILGKGSFSICKKCVDRKTNLEYAVKIMTRRADRNT--EIQSLRMAQTHPNVVKIHELHEDELHVYLVMEYLRGGELLERIKSKRSFSETEACDIMRKLVSVVKFLHKIGVVHRDLKPENLLFTDKTESAQLKLVDFGFAKVK--GSKPMQTPCFTLSYAAPEILKNATGENKPSSYDESVDIWSLGVILYTMLSGKVPFQ--PKQYTNQSAIGIMKSIMQGEVSFNGEEWRDVSLSAKGLIQGLLRVDPTKRMTVEDILSHEWITGRIEMPTTPLRTPNILDSSGNFVGKAFQVALNAYHKAART-VTLMDVASAPLAKRRKMK 978
            L D+ LG+GSFSIC+KCV +K+N  +AVKI+++R + NT  EI +L++ + HPN+VK+HE+  D+LH +LVME L GGEL ERIK K+ FSETEA  IMRKLVS V  +H +GVVHRDLKPENLLFTD+ ++ ++K++DFGFA++K   ++P++TPCFTL YAAPE+L N  G      YDES D+WSLGVILYTMLSG+VPFQ   +  T  SA+ IMK I +G+ SF GE W++VS  AK LIQGLL VDP KR+ +  +  +EW+    ++ + PL TP+IL SSG  V    +   +A++K  R    L +V  APLAKRRKMK
Sbjct:  427 LKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELL-NQNG------YDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMK 747

HSP 2 Score: 120.168 bits (300), Expect = 3.134e-27
Identity = 79/263 (30.04%), Postives = 136/263 (51.71%), Query Frame = 1

Query:   25 EILGKGSFS---ICKKCVDRKTNLEYAVKIMTRRA---------DRNTEIQSLRMAQTHPNVVKIHELHEDELHVYLVMEYLRGGELLERIKSKRSFSETEACDIMRKLVSVVKFLHKIGVVHRDLKPENLLFTDKTESAQLKLVDFGFAK---VKGSKPMQTPCFTLSYAAPEILKNATGENKPSSYDESVDIWSLGVILYTMLSGKVPFQPKQYTNQSAIGIMKSIMQGEVSFNGEEWRDVSLSAKGLIQGLLRVDPTKRM 768
            ++LG G++    + +K     T   YA+K++ +              TE Q L   +  P +V +H   + E  ++L+++Y+ GGEL   +  +  F+E E    + ++V  ++ LHK+G+++RD+K EN+L      +  + L DFG +K      ++   + C T+ Y AP+I++        S +D++VD WSLGV++Y +L+G  PF      N  A  I + I++ E  +  E    +S  AK LIQ LL  DP KR+
Sbjct:   53 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILL---DSNGHVVLTDFGLSKEFVADETERAYSFCGTIEYMAPDIVRGGD-----SGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQA-EISRRILKSEPPYPQE----MSALAKDLIQRLLMKDPKKRL 302

The following BLAST results are available for this feature:

BLAST of TCONS_00006424 vs. Swiss-Prot (Human)

BLAST of TCONS_00006424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KS6A5	1.196e-105	54.57	Ribosomal protein S6 kinase alpha-5 OS=Homo sapien...	[more]

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TCONS_00006424 (transcript) - C. hemisphaerica