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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006474 ID=TCONS_00006474|Name=TCONS_00006474|organism=Clytia hemisphaerica|type=transcript|length=2546bpRun BLAST on NCBI protein sequence of TCONS_00006474-protein >TCONS_00006474-protein ID=TCONS_00006474-protein|Name=TCONS_00006474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp MATGMAERHVAHILFFVFHCLLLAYAEEGRHTRFEYKQSFKGPHLVNKQGRun BLAST on NCBI transcript from alignment at sc0000067:60759..70443- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006474 ID=TCONS_00006474|Name=TCONS_00006474|organism=Clytia hemisphaerica|type=transcript|length=9685bp|location=Sequence derived from alignment at sc0000067:60759..70443- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:60759..70443- >TCONS_00006474 ID=TCONS_00006474|Name=TCONS_00006474|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at sc0000067:60759..70443- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006474 vs. Swiss-Prot (Human)
Match: LMAN1 (Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2) HSP 1 Score: 361.688 bits (927), Expect = 2.414e-114 Identity = 192/455 (42.20%), Postives = 275/455 (60.44%), Query Frame = 1
Query: 307 HTRFEYKQSFKGPHLVNKQGNIPFWTYYGSAIPSDEQVRVTPSLKDQRGGLWAKTKTNAPFWEIEVFFKVSGRGRVGGDGLAVWFTKDQGTTGPVFGSSDHWTGMGLFFDSFDNDGEQNNPYVMVMLNDGTKTYDHFKDGSNQQLGGCMRDFRNRPHAIRAKVRYYNNVLTVFYHNGMSEKSEDYELCMRAENVELPKEGFFGVTAATGGLADDHDVIKFLTHSLTPP-LSXXXXXXLISEDQRKKYEEQYGEFTHKLEEKKTEFQKEHPEKQVQ--EEKFESVYERDIRLIYEGQNSMHQIMRGLHSK-----------TGELTTEINNL-------HSAVNQKTXXXXXXXXXXXRNDVNRLINLQNEVHTAIRDLQ---SRSGNTDDQRKLERVEQNIRTILENVVLLASKMNDKTNKQASQQNCPTVTCLSTGTFIFMMFLQIALIVGYSM 1599
H RFEYK SFKGPHLV G +PFW + G+AIPS +Q+RV PSLK QRG +W KTK WE+EV F+V+GRGR+G DGLA+W+ ++QG GPVFGS+D W G+G+FFDSFDNDG++NNP ++++ N+G YDH DG++Q L C RDFRN+P+ +RAK+ YY N LTV +NG + DYE C + EN+ +P +G FG++AATGGLADDHDV+ FLT LT P K ISE +++KY+E++ F +L++KK EFQK HP+ Q Q EE FESV +R++R ++EGQN +H ++ L+ + LT EI+ H + Q+ + VN + N +E + +Q S G + + +++++ + ++ L + K + P +CLST FI + +Q L +GY M
Sbjct: 43 HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGMQHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVHFIIFVVVQTVLFIGYIM 497 HSP 2 Score: 81.2629 bits (199), Expect = 8.664e-16 Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 2
Query: 1784 PXEGFFGVTAATGGLADDHDVIKFLTHSLTPPLSEEEKK-KMISEDQRKKYEEQYGEFTHKLEEKKTEFQKEHPEKQVQ--EEKFESVYERDVRLIYEGQN 2077
P +G FG++AATGGLADDHDV+ FLT LT P E K ISE +++KY+E++ F +L++KK EFQK HP+ Q Q EE FESV +R++R ++EGQN
Sbjct: 239 PAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQN 339 The following BLAST results are available for this feature:
BLAST of TCONS_00006474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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