TCONS_00006487 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006487
Unique Name	TCONS_00006487
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2403

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000067:268694..273138-

transcript sequence

>TCONS_00006487 ID=TCONS_00006487|Name=TCONS_00006487|organism=Clytia hemisphaerica|type=transcript|length=2403bp
GGCCAAAAGACGTATATTCTGACTCATGACGTCAAATCGGAAAAACAAAT
TCATATTAAATTGAGGAAATTTGCGGGATTGTTTTTCACCAGAATACCTT
CTGTTAAAAGTGTTTCGGTTTATGAAACAAGAAATTCCTGAAGCGACTGT
GTGAAAATTtgttatcttttgatatttcaagataaaaggatatttataaa
aagaaatttcaaacaaCCATAGATATCGGggatttttaaataaagtgtTA
TTTATTCGACGAACTTGGTGTAAGCAAGCAACAGGTCTTTGCATTCAAAA
GGACCAGTCCGTTGAAAGTTTGTCACGATGAAGGGCCCGTATAAGAAACG
gGATCTGGTACTGGAAGACAGTTTGGTTTCAAAAGAATCACAAAAAGAAT
ATAAGCAGAGATGGCGCTCCATACGAATTCTTTATGCTACGATGTTCTTC
GACAGTCTCTctttttccatcGTTTTATCGTCCATCTGGCCGTACATGAA
AAAGATAAACCCTGATCCAAATCTCAGTCCTGTATACGCTGGTTGGGCCA
ATGTTGGATTCCAACTGGCTGGTATTTTAATGGACTTCGTCATGGGTGTG
TGGACCAACCGACGCGGCTCCACTGAACCCCTACTTGGTGCTTTATTTCT
GTTTGCCCTTGGTAACTTATTGTATGGATACGCACAAGCTTGTGGAACCT
ATGGCATTGCCATGGTGATATTTTCCAGAGCTGTCATTGGCTTATCCACA
GGAACGAACGTGGTGACACGTGTTGTTGCAGCAGAAGCTACCACATTGAA
AGAACGAACCAAAGTGATGGCTCACATGTCCATTGCACAAGGTCTTGGTT
TCTCATTCGGACCAGCTATCCAACTAGCGAGTGTTCCACTTGGAGATGAT
GGAATATACATCGAATCCTTGCGTTTACATTTGGATCTTTACACGGCACC
GGCATTCGTGAGTGTGGTGGTAGCCATTTTGAATGTCACTGCAGTGTTGG
TATGGTACAAAGAATTCCATGTGGATATTTATCACGATAGTCAGGATGAT
CATAAGATTGACAGCTACCGTCAACTGCTGCAGAAACACGGTGCACCAAA
AATAAAGATCGACAAGAAAGCCATCCTCGCCACTCTCTTCTTGTATTTTG
TCGTTCAGAACGCGTTCGCTCTCCATGAAACGATTTTCACACCACTTGCC
ATGGATCAATTTGCTTGGACTCGTTCTCAGGCCACTTTGTGGGTTGGCAT
CATTTTCTTCATCGCTGGATGTATTGCAGTCTTTACTTTCGCAATCACTG
ACGTCTTAGAGAAAAAGATCAACGATCGGAAACTTCTTCTCTTCGGATTC
ATCCTGACATTTATCGGATTCACCGTTTATTTACCATGGGGAAATAATTA
TCCTAAGTTGAAACAATCAGTATTCAAAAACACCATTGGGGAACTTAACA
CGAATAATACAGTACTGAACACAACAGCTGGCCATCAGAAAGCTTTGGTC
GATTTTGTTGGATGTCCTGAGGAATACACTTGGTGTCACGATACTCCACA
GATGCATTTGTCGCAGCTGGTGTTGGGAATGTTGTGTCTGTCTGTTGGTT
ATCCTCTAGTCATGGTCTTAACCACTTCTATATATTCAAAAATCATCGGA
CCTAAACCACAGGGTTTGCTTCAAAGTTGGCTTGCAGCAGTCGGCGGCGT
CGCAAGAACGGCTGGTCCCGCGTTAGTGACTTATATGTATGTTTTAGCTG
GTCCTCGATGGACCTTCCTGACAGTTGATGGTTTTCTGATAGCAGCTCTT
CTGGTGATTGCTGTGTGTTATAAAAGACTTGTGCCATACCatttgatggt
tttgaagaaaaataaaaacattatttcGACGGATATTGAAAAGAATCAAA
TGTTGAGTCGATTGCAATCTTGCAGTTCCGCTGAAACGTATCTGGAAGAT
GCTAATGAGATTCTGACTGTTGTTTGATCACCGAGGTGGAGTGTCTATTG
ATTTTTATAAGGACTATCTTGTACGATGACACTCCTCCATTGTGTTGATC
GGAAATTATGGGGATGGACGGATTGGGagtaatgaaaaatgaaaacttta
gaTTTTGTACATATTCTATAAATAGATCAcaaatttatacaaaatatttt
tttctgtttcaaagttatattttttgtaaatgataaaacatgaaatttga
taaaaaaaaatggtCGCTCAAATCCCTTTCAGACTTTTAAGAATAAAAGT
CGTgatattttggtattttgaatttattctgaaaacaaggcaaattttca
CTAACGCTGGCGTTGGTGGGAAATCATCAGGGATAAGAAAGTTTGTGTCA
TGATCAAAAAATAACTTTAATTGTTAGTTATGCAATTAAATAAATCTTGA
AAT

Run BLAST on NCBI

transcript from alignment at sc0000067:268694..273138-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006487 ID=TCONS_00006487|Name=TCONS_00006487|organism=Clytia hemisphaerica|type=transcript|length=4445bp|location=Sequence derived from alignment at sc0000067:268694..273138- (Clytia hemisphaerica)
GGCCAAAAGACGTATATTCTGACTCATGACGTCAAATCGGAAAAACAAAT
TCATATTAAATTGAGGAAATTTGCGGGATTGTTTTTCACCAGAATACCTT
CTGTTAAAAGTGTTTCGGTTTATGAAACAAGAAATTCCTGAAGCGACTGT
GTGAAAATTTGTTATCTTTTGATATTTCAAGATAAAAGGATATTTATAAA
AAGAAATTTCAAACAACCATAGATATCGGGGATTTTTAAATAAAGTGTTA
TTTATTCGACGAACTTGGTGTAAGCAAGCAACAGGTCTTTGCATTCAAAA
GGACCAGTCCGTTGAAAGTTTGTCACGATGAAGGGCCCGTATAAGAAACG
GTAAGCAAACTCATGTAGAATAATTTCACGAAAGTGTTTTATATATTTTG
TATCCAAACCAAAGAAGATAAGAGGATCTGAAAAATATATATTCTTCTTT
TTCTCATCTTTAGGGATCTGGTACTGGAAGACAGTTTGGTTTCAAAAGAA
TCACAAAAAGAATATAAGCAGAGATGGCGCTCCATACGAATTCTTTATGC
TACGATGTTCTTCGACAGTCTCTGTAAGTATTGAGCGCCAATGCCAACAT
ATTGTACATCCGGGTGAAATCGCTAACAATACAGAAATGCAGAATTTTGC
AAATTTGGGTGTTAGAGAATTCTAGACTCCCACATTGGTCTTGAGAAGAA
ACACCACTACACTTTCTATTCGTTTATATGTCGCAAATTCATTGAAATTT
AAAGCGCATGACTTGTTGTGATTGTGGTTGTTTAAGTGACCATTGACTGT
TGCGGTCCTTAAGGTGTAAGCCCTATGCACACTTTTACACGCAAGGGAAA
ACAAAAACATTATGGTAGGGTTTAGTGATGCCACAATGTGGTTACCGATN
CAGTTTTACACGCAACGGAAAACAAAAACATTATGGTAGGGTTTAGTGAT
GCCACAATGTGGTTACCGATCTTGACGACGTTTCCTTTCCCCTTTGTAAC
CGGTTATTGCTTGTTTTTATTTTCAGCTTTTTCCATCGTTTTATCGTCCA
TCTGGCCGTACATGAAAAAGGTACAAAAACTTCACATTTTAATTCTTTGA
GACCTACACGCTAGACCTACACTTGACAATGAGAAACTTTTATGATACTT
GTGATAACCTTCTTCGATAGTAAGCTGCAAATTCCGTGGAGAGAAATGAA
AATGTGTGTGTATTGTCCTAATGTTCTTCGCACAAAAATTTTGACCCTTA
TCAAAAGCAAAACTCCACTAATCGAATGGTATCTGTATTTTCATTGTAGA
TAAACCCTGATCCAAATCTCAGTCCTGTATACGCTGGTTGGGCCAATGTT
GGATTCCAACTGGCTGGTATTTTAATGGACTTCGTCATGGGTGTGTGGAC
CAACCGACGCGGCTCCACTGAACCCCTACTTGGTGCTTTATTTCTGTTTG
CCCTTGGTAACTTATTGTATGGATACGCACAAGCTTGTGGAACCTATGGC
ATTGCCATGGTGATATTTTCCAGAGCTGTCATTGGCTTATCCACAGGTAA
GTTTGACGTCATCATTTGGACAAAGATATTGATTGAAGATGAACTACTTT
ATTTTTAATCGCGCTAGAATTATGAAAAAATCGATTTTTTTCTTGATAGA
AGTCCTTAGTGAGAAAGAGTCCAAGGGCTCATAATCGCTATAAATGTGCC
TACTAAGACGCAAAAACTAATAATCGATTTACAACTGACCATGTCATCAA
TCCATTCTCACATACAGGAACGAACGTGGTGACACGTGTTGTTGCAGCAG
AAGCTACCACATTGAAAGAACGAACCAAAGTGATGGCTCACATGTCCATT
GCACAAGGTCTTGGTTTCTCATTCGGACCAGGTAAGATAAGTACTAGTCT
GTGGAAGATGCTGTTTTATTAGGAAGTTCGCAAAAGGTTTTAGTTGTTGG
CGAGTGAAATTTATATCCACAAAGATATTAATGATCCATGTCTTTGACAA
ATTATGATAATCGTTTCGTTTTCTTTGCAGCTATCCAACTAGCGAGTGTT
CCACTTGGAGATGATGGAATATACATCGAATCCTTGCGTTTACATTTGGA
TCTTTACACGGCACCGGCATTCGTGAGTGTGGTGGTAGCCATTTTGAATG
TCACTGCAGTGTTGGTATGGTACAAAGAATTCCATGTGGATATTTATCAC
GATAGTCAGGATGATCATAAGATTGACAGCTACCGTAAGTCGTTTGAATT
TCTTTTTTCCTTTTCTGAACTTCATTTTCTTTCCAAAACAGCTAATGAAG
TGATTTTTTGATAATAACTGCAAATGTACACAACCTTTGCTTCTGAGATC
CTTCTGAAGTAACTACGGAAAGTTAGTTCATAATAATATCCATCCCTCGA
TTAATATTTCAAACTATTCCCGTCTGCTCTTCAGGTCAACTGCTGCAGAA
ACACGGTGCACCAAAAATAAAGATCGACAAGAAAGCCATCCTCGCCACTC
TCTTCTTGTATTTTGTCGTTCAGAACGCGTTCGCTCTCCATGAAACGTAA
GCAAAAACACTTCATATAATTTCATGGTCAGAGGTTGCCTCCTTTTTTCT
ATCGCATACTTACTACAAAATCTATAAGGAATCGAAATCTTTGCTTGATG
TTTTCTGGACGACGTTTGTGAGAATTTACCCTGGTTAAATGTATTTAACT
AAACTCAACTCGAAAGGCTCTCAAAAAGTGTAACAATTCAATCATGTCAT
AATATCTTTTCTCCTTTTAGGATTTTCACACCACTTGCCATGGATCAATT
TGCTTGGACTCGTTCTCAGGCCACTTTGTGGGTTGGCATCATTTTCTTCA
TCGCTGGATGTATTGCAGTCTTTACTTTCGCAATCACTGACGTCTTAGAG
AAAAAGTAAGGAAACTAACTTTTTCAATGAGAAATTCAAGGTATCATGAG
TAGGAATCTTCAAAAACTTTTGCCAGACGCAAAAAATCGCAGAACTTTCG
TTGTAATACTAGTTAACTCTATCATTCTGTTATCAACGAATCTTAGGTGA
ACTCTTTAAACGTTTTGTCAAAGATATGATTAAAAGAATTGCCTGAAAGG
CTGAAATACCACCAAACTCATATTTTTGCATTTTCTTTTATTCAGGATCA
ACGATCGGAAACTTCTTCTCTTCGGATTCATCCTGACATTTATCGGATTC
ACCGTTTATTTACCATGGGGAAATAATTATCCTAAGTTGAAACAATCAGT
ATTCAAAAACACCATTGGGGAACTTAACACGAATAATACAGTACTGAACA
CAACAGCTGGCCATCAGAAAGCTTTGGTCGATTTTGTTGGATGTCCTGAG
GAATACACTTGGTGTCACGATACTCCACAGATGCATTTGTCGCAGCTGGT
GTTGGGAATGTTGTGTCTGTCTGTTGGTTATCCTCTAGTCATGGTCTTAA
CCACTTCTATATATTCAAAAATCATCGGACCTAAACCACAGGTAAATGTC
AAGCTCAATTCTGTTTTATTCAACATCTTTGTTCTCGCTTTTGTTAAGTC
GAGAATATTCCCTACAGTTTCGCCTTCCCAACCTGCATCACTGTCTTGTA
AAGGCTAAAAGTTGTGAACAAATGACGATGCTCGTATATACCGATGTGAC
TCATTCTGACCCGTTAAGTTCAAAACTATATCCACTGTTTTTCGTTTTAT
TTAGGGTTTGCTTCAAAGTTGGCTTGCAGCAGTCGGCGGCGTCGCAAGAA
CGGCTGGTCCCGCGTTAGTGACTTATATGTATGTTTTAGCTGGTCCTCGA
TGGACCTTCCTGACAGTTGATGGTTTTCTGATAGCAGCTCTTCTGGTGAT
TGCTGTGTGTTATAAAAGACTTGTGCCATACCATTTGATGGTTTTGAAGA
AAAATAAAAACATTATTTCGACGGATATTGAAAAGAATCAAATGTTGAGT
CGATTGCAATCTTGCAGTTCCGCTGAAACGTATCTGGAAGATGCTAATGA
GATTCTGACTGTTGTTTGATCACCGAGGTGGAGTGTCTATTGATTTTTAT
AAGGACTATCTTGTACGATGACACTCCTCCATTGTGTTGATCGGAAATTA
TGGGGATGGACGGATTGGGAGTAATGAAAAATGAAAACTTTAGATTTTGT
ACATATTCTATAAATAGATCACAAATTTATACAAAATATTTTTTTCTGTT
TCAAAGTTATATTTTTTGTAAATGATAAAACATGAAATTTGATAAAAAAA
AATGGTCGCTCAAATCCCTTTCAGACTTTTAAGAATAAAAGTCGTGATAT
TTTGGTATTTTGAATTTATTCTGAAAACAAGGCAAATTTTCACTAACGCT
GGCGTTGGTGGGAAATCATCAGGGATAAGAAAGTTTGTGTCATGATCAAA
AAATAACTTTAATTGTTAGTTATGCAATTAAATAAATCTTGAAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003684	XLOC_003684	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000067	supercontig	sc0000067:268694..273138 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.32901	0.525457	0.42237	0.797299	0	0.951052	0.139609	0.247303	1.66495	2.09383	0.448003	0.584164	4.01379	6.4643	3.79548	4.79072	4.52346	5.27869	2.14312	2.32936	2.21235	1.91312	2.1161	0	0	0

Blast

[Close]

BLAST of TCONS_00006487 vs. Swiss-Prot (Human)
Match: MFSD8 (Major facilitator superfamily domain-containing protein 8 OS=Homo sapiens GN=MFSD8 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.575e-87
Identity = 180/490 (36.73%), Postives = 276/490 (56.33%), Query Frame = 1

Query:  385 ESQKEYKQRWRSIRILYATMFFDSLSFSIVLSSIWPYMKKINPDPNLSPVYAGWANVGFQLAGILMDFVMGVWTNRRGSTEPXXXXXXXXXXXXXXXXXXQACGTYGIAMVIFSRAVIGLSTGXXXXXXXXXXXXXXLKERTKVMAHMSIAQGLGFSFGPAIQLASVPLGDDGIYIESLRLHLDLYTAPAFVSVVVAILNVTAVLVWYKEFHVDIYHDSQDDHKIDSYRQLLQKHG-APKIKIDKKAILATLFLYFVVQNAFALHETIFTPLAMDQFAWTRSQATLWVGIIFFIAGCIAVFTFAITDVLEKKINDRKXXXXXXXXXXXXXXVYLPWGNNYPKLK------QSVFKNTIGEXXXXXXXXXXXAGHQKALVDFVGCPEEYTWCHDTPQMHLSQLVLGMLCLSVGYPLVMVLTTSIYSKIIGPKPQGLLQSWLAAVGGVARTAGPALVTYMYVLAGPRWTFLTVDGFLIAALLVIAVCYKRLV 1833
            E+++ YK RWRSIRILY TMF  S+ FS+V+ SIWPY++KI+P  + S  + GW    + L  ++   + G+W+N R   EPL+ ++ +    N LY Y     ++    ++ +R ++G+  G   V R   A AT+L+ERT  MA++S+ Q LGF  GP  Q     LG+ G+  + ++L +++YT P  +S  + ILN+  +L   +E  VD   DS    K  ++ +        P+  ID+ A++A   L+FV    FAL ETI TPL MD +AWT+ QA L+ GII    G  AV  F    +L KKI +R +LL G I+ ++GF + LPWGN +PK++       S+   T GE+            +++      GC  E  WC  TP +HL+Q +   + + +GYP+  +++ ++YSKI+GPKPQG+   WL A G  AR  GP  ++ +Y   GPRW F  V G ++  + ++ V YKRL+
Sbjct:   27 ETEEHYKSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPTADTS--FLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILREHRVD---DSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERP----TGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLI 507

The following BLAST results are available for this feature:

BLAST of TCONS_00006487 vs. Swiss-Prot (Human)

BLAST of TCONS_00006487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MFSD8	4.575e-87	36.73	Major facilitator superfamily domain-containing pr...	[more]

You are here

TCONS_00006487 (transcript) - C. hemisphaerica