TCONS_00006524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006524
Unique NameTCONS_00006524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006524 ID=TCONS_00006524|Name=TCONS_00006524|organism=Clytia hemisphaerica|type=transcript|length=1722bp
CTtagtttttcaaagaaatagaaAAGCTCTTATGGTGGTGacttaaaaca
aaatttctcgAAAAAGGCTAAAGACACATAACATTGATAGGCTTTTTGGT
TGCGAAGGATAAACAGCAGTCTGATGAATCTTTTGGATAATTTCAATGAT
TATTTGTTATCACATCCATATGATCGCCTATCGGATTCAGaagattcaat
ttcaatttacttAGGGCAAGAATTGCTGGCGTGTAATAAATTATCTAAAA
GCACAGGTGAAACACCGAACCGAGTGTACCCAACAAACCATGGAAAACAC
ATCACTACCATCACCACCAGTTGGCTTTCAAACTAAACAACAGGAAGATG
CTTTTATAGTAGACTGTTCCAACATGATTTGGTTCTATCCGAATCATCCA
TCATACCAAATTTCACTTCGGTTGGCAATTTTCTTGAATACAATATTTTC
CTTGTTATCAATTGTGGTGAATCTGAAGAATTGCCAACGTTTGTTAAGAC
ACAAGGATGGAAAAGCACCTTCATCTAACATTGTCATCTTTTCAGGTTGT
GTGACGGACATGGTAACAGCTTTCATGATCCTCACCGTATGGAATGTGCA
ATCCATAATGGCGGTCAACCATCAATTCTCTTGTCCAGTCTCATTTTTCA
CTTATCTCATTGTCATTGTTGCCGCCTTCATTATCTGCATGACAACCATA
TTATTGATCGCTGACCGTTACCTGATCGTAACATGCCCTTTTCTTTACGA
GGAACACATTACGAAGAACGCCTCAACGTACGGGAAAATCATTGCTTATA
TTTTTATCATCGCTTTGATCCTCTCTGGCATCGGATTCGCTATCTCACCC
CAAGTCTTGTATTTCATCATTACTGTCCCCTATATCGGCTGTCTTCTATG
GGCTGTTTTTGTATATCCTGCGTTATTCTATGAACGGTTTTATTTAACCA
CAACTTACACGTCCTACCAGTTAAAGGTTGGTTTACATGAACGACGAAAT
cacgaaaaattaacaaagtgTAGCTGCTTACATTCTTTCATGactgtttt
tcttttatctCCGCATCTAATTTTTACTTATGGCTGGTTTCAAAAGAATC
AGCAGATTACCTCCTTAATGTTCCATACAGCTTTGTTATGGAGTTGGGTG
ATGATTGCATTGAAGCTTGTTATCTCCGCCATCTCATTTAGCTTTGGAAT
CGAAGGTCGAGGTTTTAAGTGGAAGATTTTTAAACGAAAGCTGAGTAAGA
GACGAATTGATGACATTCAACTTAAGAAGCTAACAAATATTTGATGGAAT
TTCATGGTTAGTGGATAATTCATTATGCATGATGATTTTTCAAAGAGAAG
GCTTTATTCACTGATTTGAGGGGGTGGTTCTCCGACCCTTACATCCAATG
ACCACTAAAACTAACCTCTGGTTAGTAAACACTTTTCCTTTTCTGCTGGT
AATTAGCTGATAGACTAAACAACTGTTACAATTTGAACTGACGTCAATCC
GCCAAAACATTAAATTATCTACCATGAATTTCAAAGCAGGAAAATATAAG
GAGGAATTTTTGGTCAAACAAACGGGAGAGGAGATTGTACTTGTtaatat
tttaagaaatttgagAGAAGACAAAACATGGTGCTGGGTATCTGCGGATG
GTAAGGGTAAGGGTTtatcacctttcaaagtctctctaagagtcgaaaaa
atcaggaaaatttaaattagtc
Run BLAST on NCBI

transcript from alignment at sc0000067:530271..532777-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006524 ID=TCONS_00006524|Name=TCONS_00006524|organism=Clytia hemisphaerica|type=transcript|length=2507bp|location=Sequence derived from alignment at sc0000067:530271..532777- (Clytia hemisphaerica)
CTTAGTTTTTCAAAGAAATAGAAAAGCTCTTATGGTGGTGACTTAAAACA
AAATTTCTCGAAAAAGGCTAAAGACACATAACATTGATAGGCTTTTTGGT
TGCGAAGGATAAACAGCAGTCTGATGAATCTTTTGGATAATTTCAATGAT
TATTTGTTATCACATCCATATGATCGCCTATCGGATTCAGAAGATTCAAT
TTCAATTTACTTAGGGCAAGAATTGCTGGCGTGTAATAAATTATCTAAAA
GGCAAGTAAACATGATCATTCTTATTTTGCAGTTTTTAATTTTTAGCTCT
ATAAAAAAATGGTCATTGTTTTCAAAAGTTTCAAGAAATACCTTAAAGGA
AATCATTTTTGCGAATTTTGTTGAATTTTGCTATAAAAAAAGTCTACCTC
TCCAAAATAAGCCAAGTCAAAATTTTCTATTAAGGTTTATGATTTTGTTA
TTTCTTCGATTCTTGTGAGATTTGGTTCCTATCTCGGCATTTTTGAACAC
ATGACAGAATATTTTTTTATGACAACCCATGATCTCAGAATATTTTCCAC
AACCCTTCAGCACAGGTGAAACACCGAACCGAGTGTACCCAACAAACCAT
GGAAAACACATCACTACCATCACCACCAGTTGGCTTTCAAACTAAACAAC
AGGAAGATGCTTTTATAGTAGACTGTTCCAACATGATTTGGTTCTATCCG
AATCATCCATCATACCAAATTTCACTTCGGTTGGCAATTTTCTTGAATAC
AATATTTTCCTTGTTATCAATTGTGGTGAATCTGAAGAATTGCCAACGTT
TGTTAAGACACAAGGATGGAAAAGCACCTTCATCTAACATTGTCATCTTT
TCAGGTGAGATATTGTTCATTCCCATGCCGAGGAAATAATTTCTACGTCC
AGAGAATGCCTTCAAAAAAGCTTGCAAATCTAAGGGATTGAATTTTTGTG
AAAATATCCAGTTGGTGTCCAAAGTCGAACCCAGTTCCTTTAATCACTTT
TTTATGATTCTGGATAGCGCTCATTATTGTTCATCAGTAAAATTAAAAAG
TAGTGGCTCTGGGTACAAGATTGAATTAATGTTTTAAGAATAAGCTGAAA
TCTAGTGGAGAACTCTGAAAACTTTTTGGCAAAGAACCGAGAATGTACCT
CAGAAATTTCCCAGAAAACCATGATATTTCTTAAGTGACCCCTCAAATTG
GGAGGTAATGTCTATTAAAATGAGTAATTTAAGTTTCTCAGAAAAATAAA
CGATACGGAGAACAGTTGTAGAATCAGACTTGAGAAAGGCGTATCAAGTT
TTTTTTAAAGAATGAATTATTGTTTTTCAGGTTGTGTGACGGACATGGTA
ACAGCTTTCATGATCCTCACCGTATGGAATGTGCAATCCATAATGGCGGT
CAACCATCAATTCTCTTGTCCAGTCTCATTTTTCACTTATCTCATTGTCA
TTGTTGCCGCCTTCATTATCTGCATGACAACCATATTATTGATCGCTGAC
CGTTACCTGATCGTAACATGCCCTTTTCTTTACGAGGAACACATTACGAA
GAACGCCTCAACGTACGGGAAAATCATTGCTTATATTTTTATCATCGCTT
TGATCCTCTCTGGCATCGGATTCGCTATCTCACCCCAAGTCTTGTATTTC
ATCATTACTGTCCCCTATATCGGCTGTCTTCTATGGGCTGTTTTTGTATA
TCCTGCGTTATTCTATGAACGGTTTTATTTAACCACAACTTACACGTCCT
ACCAGTTAAAGGTTGGTTTACATGAACGACGAAATCACGAAAAATTAACA
AAGTGTAGCTGCTTACATTCTTTCATGACTGTTTTTCTTTTATCTCCGCA
TCTAATTTTTACTTATGGCTGGTTTCAAAAGAATCAGCAGATTACCTCCT
TAATGTTCCATACAGCTTTGTTATGGAGTTGGGTGATGATTGCATTGAAG
CTTGTTATCTCCGCCATCTCATTTAGCTTTGGAATCGAAGGTCGAGGTTT
TAAGTGGAAGATTTTTAAACGAAAGCTGAGTAAGAGACGAATTGATGACA
TTCAACTTAAGAAGCTAACAAATATTTGATGGAATTTCATGGTTAGTGGA
TAATTCATTATGCATGATGATTTTTCAAAGAGAAGGCTTTATTCACTGAT
TTGAGGGGGTGGTTCTCCGACCCTTACATCCAATGACCACTAAAACTAAC
CTCTGGTTAGTAAACACTTTTCCTTTTCTGCTGGTAATTAGCTGATAGAC
TAAACAACTGTTACAATTTGAACTGACGTCAATCCGCCAAAACATTAAAT
TATCTACCATGAATTTCAAAGCAGGAAAATATAAGGAGGAATTTTTGGTC
AAACAAACGGGAGAGGAGATTGTACTTGTTAATATTTTAAGAAATTTGAG
AGAAGACAAAACATGGTGCTGGGTATCTGCGGATGGTAAGGGTAAGGGTT
TATCACCTTTCAAAGTCTCTCTAAGAGTCGAAAAAATCAGGAAAATTTAA
ATTAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003692XLOC_003692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006524-exon-sc0000067-1575043694:532527..532777TCONS_00006524-exon-sc0000067-1575043694:532527..532777Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1575043694:531924..532217TCONS_00006524-exon-sc0000067-1575043694:531924..532217Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1575043694:530271..531447TCONS_00006524-exon-sc0000067-1575043694:530271..531447Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1510915933:532527..532777TCONS_00006524-exon-sc0000067-1510915933:532527..532777Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1510915933:531924..532217TCONS_00006524-exon-sc0000067-1510915933:531924..532217Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1510915933:530271..531447TCONS_00006524-exon-sc0000067-1510915933:530271..531447Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1491911889:532527..532777TCONS_00006524-exon-sc0000067-1491911889:532527..532777Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1491911889:531924..532217TCONS_00006524-exon-sc0000067-1491911889:531924..532217Clytia hemisphaericaexon
TCONS_00006524-exon-sc0000067-1491911889:530271..531447TCONS_00006524-exon-sc0000067-1491911889:530271..531447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:530271..532777 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.150419	0	0	0.295332	1.47682	0	0.26359	0	0.161007	0	0	0.620594	0.844958	0.0875888	0	0	0	0	0.487199	0.33001	0.424898	0.251099	0.482378	0.705387	1.33971	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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