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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006602 ID=TCONS_00006602|Name=TCONS_00006602|organism=Clytia hemisphaerica|type=transcript|length=3774bpRun BLAST on NCBI protein sequence of TCONS_00006602-protein >TCONS_00006602-protein ID=TCONS_00006602-protein|Name=TCONS_00006602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=589bp MIQETLDFLYFQWIPIWEIFLATVEPHLPEHLHWNEICWSFVFYMNELRLRun BLAST on NCBI transcript from alignment at sc0000069:687743..718085+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006602 ID=TCONS_00006602|Name=TCONS_00006602|organism=Clytia hemisphaerica|type=transcript|length=30343bp|location=Sequence derived from alignment at sc0000069:687743..718085+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000069:687743..718085+ >TCONS_00006602 ID=TCONS_00006602|Name=TCONS_00006602|organism=Clytia hemisphaerica|type=CDS|length=1770bp|location=Sequence derived from alignment at sc0000069:687743..718085+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006602 vs. Swiss-Prot (Human)
Match: SGPL1 (Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN=SGPL1 PE=1 SV=3) HSP 1 Score: 490.73 bits (1262), Expect = 1.217e-158 Identity = 232/541 (42.88%), Postives = 347/541 (64.14%), Query Frame = 3
Query: 339 YMNELRLWIHRKTNGLENWEIVTNTMLYCFYAFLAFEVLRRIIPVVFFNDDGFFNMLKKKAFKVARRLPIVGPKIQEAIDDAMKQLEET-AFSVGGNEYIKKLPYNGMNKEEVLKEIDTYQNIGGCSWQDGYVSGAIYSDGE-LTELMTDVYSRYCWSNPLHADVFPDVRKMEAECVRMVINMFNGDENCCGLMTSGGSESIMMAVKCYRELARERGIEKPEIVAPYSVHPAFDKGCHYFGIKLTHVPVDKKTGKANTKAMERAISKRTILIVGSVPSYPHGCIDDLVELSRIALKKNVYLHADACLGGFIVAFMNKAGYDLP-PFDFRLPGITSISCDTHKYGYTPKGSSVVMYRSKDIRKHQYYTQPNWSGGVYAAASFPGSRPGNTIATTWATMMHLGEKGYVERTKLIIKTANDIGKRVSKIPGLYLLANVDVCIVAFASNDFDIFLMSDDLAKKGWHLNPLQFPSGLHIAVTLNHTKPGVADRFVNDIKGVAQRLMKNPGIKAEGKGAIYGLSQQIPDRSIITDITTGFLDTYYSV 1952
Y + + +++ E W+++ ++++ +E + F + ++ KKK FK+ R++PI+G KIQ+ ++ + + +F EY+K LP G++ VL+++ Y ++ WQ+G SG +YS E LTEL+ Y + WSNPLH D+FP +RK+EAE VR+ ++FNG + CG +TSGG+ESI+MA K YR+LA E+GI+ PEIVAP S H AF+K YFG+K+ VP+ K + + +AM RAIS+ T ++V S P +PHG ID + E++++A+K + LH DACLGGF++ FM KAGY L PFDFR+ G+TSIS DTHKYGY PKGSS+V+Y K R +Q++ +W GG+YA+ + GSRPG A WA +MH GE GYVE TK IIKTA + + I G+++ N + ++A S DFDI+ +S+ + KGW+LN LQFP +H +TL H + VA +F+ DI+ ++MKNP K G GAIYG++Q DR+++ ++++ FLD+ YS
Sbjct: 22 YSTKAKNYVNGHCTKYEPWQLIAWSVVWTLLIVWGYEFV--------FQPESLWSRFKKKCFKLTRKMPIIGRKIQDKLNKTKDDISKNMSFLKVDKEYVKALPSQGLSSSAVLEKLKEYSSMDAF-WQEGRASGTVYSGEEKLTELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRIACSLFNGGPDSCGCVTSGGTESILMACKAYRDLAFEKGIKTPEIVAPQSAHAAFNKAASYFGMKIVRVPLTKMM-EVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVKYKIPLHVDACLGGFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKGSSLVLYSDKKYRNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLNQLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDRNMVAELSSVFLDSLYST 552 The following BLAST results are available for this feature:
BLAST of TCONS_00006602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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