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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006723 ID=TCONS_00006723|Name=TCONS_00006723|organism=Clytia hemisphaerica|type=transcript|length=3878bpRun BLAST on NCBI protein sequence of TCONS_00006723-protein >TCONS_00006723-protein ID=TCONS_00006723-protein|Name=TCONS_00006723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1117bp MRQMVVTFALLRNCIRQVNSSQFFISSIRSKHQFCLNGSLGVPRRQISSSRun BLAST on NCBI transcript from alignment at sc0000070:95493..119091+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006723 ID=TCONS_00006723|Name=TCONS_00006723|organism=Clytia hemisphaerica|type=transcript|length=23599bp|location=Sequence derived from alignment at sc0000070:95493..119091+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:95493..119091+ >TCONS_00006723 ID=TCONS_00006723|Name=TCONS_00006723|organism=Clytia hemisphaerica|type=CDS|length=3354bp|location=Sequence derived from alignment at sc0000070:95493..119091+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006723 vs. Swiss-Prot (Human)
Match: SYVC (Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4) HSP 1 Score: 1230.7 bits (3183), Expect = 0.000e+0 Identity = 593/1041 (56.96%), Postives = 761/1041 (73.10%), Query Frame = 2
Query: 413 KTASQLKKEAKRLAKMEKFAXXXXXXXXXXXXXXXXXXXXXXXXX-XXXITYDIQTPAGDKKDTKCTLPDAYSPSYVESAWYSWWEKKGFFKPEYGRESITEKNDKGNFTIVIPPPNVTGNLHLGHALTGAIEDAVTRWHRMNGKTTLYLPGCDHAGIATQVVVERQLKKEQNLSRHDLGREKFVEKVWEWKNKKGDRIYHQIRKLGSSVDWERASFTMDEKLSKAVKETFIRLHDEKLIYRSNRLVNWSCALNSAISDIEVDKKDIGGRTLLSVPGYEQKIEFGVLIHFTYPVEG--SDEKLTVATTRIETMVGDTGIAVHPTDERYKHLVGKHALHPFCNRKLLIVGDEAVDPEFGTGAVKITPGHDHNDYEIGKRHNLRFITMMDDAGLCTDVGDYKDEYKKFIKMKRFVARYEVLNELKAIGSYVKTEDNAMVVPTCSRSKDIVEPLLKPQWYVDCKEMAAKAVSAVRDGDLKIIPSMHEKTWYQWMENSRDWCISRQLWWGHRIPAYYVTI--LGEPSGSDEEEKYWVSGRSEDEALEKAAKQFNVPKEKIHLRQDEDVLDTWFSSALFPFSVFGWPDNTDEMEAFYPTSLLETGHDILFFWVARMVMFGQKLTGRLPFKEVYLHAMVRDAYGRKMSKSLGNIIDPLDVITGISLPDLMGRLNEYNLDPKELEKAQKGQKEMYPDGIPECGTDAMRFALCAYTLQGRDINLDVLRMQGYRHFCNKLWNATKFAMRNFTPEFLPRSNLKELSGQETAMDLWILSRLSVAATLCNEGFQSYEFPKATTALYNFWLYELCDVYLESLKPIFQGDDEKQKICAQNVLYTCLDAGLRMLSPFMPYVTEELYQRLPHNKETVPESICVASYPK--DWNLRNEAIEKQIEHMMEIVKTIRSKKDEYMSNKSKCLVYVRPHQNYSKEVVEKLNDVIKTLSQSSEIQLLGEKEEAPGGCAIQLVGDKCEVLLSLKGIVDFTKEIQKLRVKQEKSEQSVSKLIETTKKDDYETKVPEKVREQNQQKITQLHTEIEKLKITIDTFEQ 3514
KTA+QLKKEAK+ K+EKF +KQ+ +Q P EK +++ VITYD+ TP G+KKD +PD+YSP YVE+AWY WWE++GFFKPEYGR +++ N +G F + IPPPNVTG+LHLGHALT AI+D++TRWHRM G+TTL+ PGCDHAGIATQVVVE++L +EQ LSRH LGRE F+++VW+WK +KGDRIYHQ++KLGSS+DW+RA FTMD KLS AV E F+RLH+E +IYRS RLVNWSC LNSAISDIEVDKK++ GRTLLSVPGY++K+EFGVL+ F Y V+G SDE++ VATTRIETM+GD +AVHP D RY+HL GK+ +HPF +R L IV DE VD +FGTGAVKITP HD NDYE+G+RH L I++MD G +V F+ + RF AR VL LK G + EDN MVVP C+RSKD+VEPLL+PQWYV C EMA A +AV GDL+I+P H++TW+ WM+N R+WCISRQLWWGHRIPAY+VT+ P G D + +YWVSGR+E EA EKAAK+F V +KI L+QDEDVLDTWFSS LFP S+ GWP+ ++++ FYP +LLETGHDILFFWVARMVM G KLTGRLPF+EVYLHA+VRDA+GRKMSKSLGN+IDPLDVI GISL L +L NLDP E+EKA++GQK +P GIPECGTDA+RF LCAY QGRDINLDV R+ GYRHFCNKLWNATKFA+R F+P S + G E+ +D WI SRL+ A L N+GFQ+Y+FP TTA Y+FWLYELCDVYLE LKP+ G D+ CA+ LYTCLD GLR+LSPFMP+VTEEL+QRLP P S+CV YP+ + + ++ E +E + I + +RS + +Y + + ++ + + ++ ++ L+ + + +L AP GCA+ L D+C + L L+G+VD +E+ KL+ K+ ++++ +L E Y KVP +V+E ++ K+ Q E+ K+ I F++
Sbjct: 229 KTAAQLKKEAKKREKLEKFQQKQKIQQQQPPPGEKKPKPEKREKRDPGVITYDLPTPPGEKKDVSGPMPDSYSPRYVEAAWYPWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWREQGLSRHQLGREAFLQEVWKWKEEKGDRIYHQLKKLGSSLDWDRACFTMDPKLSAAVTEAFVRLHEEGIIYRSTRLVNWSCTLNSAISDIEVDKKELTGRTLLSVPGYKEKVEFGVLVSFAYKVQGSDSDEEVVVATTRIETMLGDVAVAVHPKDTRYQHLKGKNVIHPFLSRSLPIVFDEFVDMDFGTGAVKITPAHDQNDYEVGQRHGLEAISIMDSRGALINVP------PPFLGLPRFEARKAVLVALKERGLFRGIEDNPMVVPLCNRSKDVVEPLLRPQWYVRCGEMAQAASAAVTRGDLRILPEAHQRTWHAWMDNIREWCISRQLWWGHRIPAYFVTVSDPAVPPGEDPDGRYWVSGRNEAEAREKAAKEFGVSPDKISLQQDEDVLDTWFSSGLFPLSILGWPNQSEDLSVFYPGTLLETGHDILFFWVARMVMLGLKLTGRLPFREVYLHAIVRDAHGRKMSKSLGNVIDPLDVIYGISLQGLHNQLLNSNLDPSEVEKAKEGQKADFPAGIPECGTDALRFGLCAYMSQGRDINLDVNRILGYRHFCNKLWNATKFALRGLGKGFVP-SPTSQPGGHESLVDRWIRSRLTEAVRLSNQGFQAYDFPAVTTAQYSFWLYELCDVYLECLKPVLNGVDQVAAECARQTLYTCLDVGLRLLSPFMPFVTEELFQRLPRRMPQAPPSLCVTPYPEPSECSWKDPEAEAALELALSITRAVRSLRADYNLTRIRPDCFLEVADEATGALASAVSGYVQALASAGVVAVLALGAPAPQGCAVALASDRCSIHLQLQGLVDPARELGKLQAKRVEAQRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEAIALFQK 1262 The following BLAST results are available for this feature:
BLAST of TCONS_00006723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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