|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006788 ID=TCONS_00006788|Name=TCONS_00006788|organism=Clytia hemisphaerica|type=transcript|length=1799bp
cacgattttgtgcctTTTTACGCCAAACTTTACATTGGTTGCAAACTTTT
TGCATTTTGGTTGTCCAAATACCCCTTTTTGATTGATGCTatacttttaa
aatgtttacttTAAAAGTGGTTATTTACATTTTtcgacattttctcaaaa
atatttcgcgagtAAGGCCTTTCAAAACTttcattgggacttaatttggc
gaatgacatCTAAAACcacgaaatccgcgaaattcaatcccTACGAAAAT
TTATCCGATTTAAGTAATTTTAGGGTGTATAAAAAGCCCCCCCCCGCAAC
CATGCTACTGATCCGCAAAAGTGTTTTTTCCTCAATTGCAAAAATGGCTA
CGTCAGAATTAATAGCCATGTTCTATTTAAGATAACATAAAGATAGCAAA
TAACTATGAAGAGCGCTGTAGTAGATTACGATAATAAGAAGACTTTTAac
aagaaatcatttttgaaaataactatCTAATTCTTTGAATCCCTAAAAAC
ATAGTTAATTCTTTTACTTAGAAGCTCGAATTATAATGTCTCTGATAATA
ATGTTATTACTTCCTCTCATACATGTCCCCAACTTTGTTAATTGGAACCT
ACCCACATCGAGTGGAAAAAGGATTTAAAAATAGAACTTTCACGAATGTT
CTTGAAGGATCTATAACGAATTGTTTCCGTTTTTTAAACCATCCAACACA
ACAAATATAACTTCTCTCTAACCGAAAGTAATATCTTATTTCCTCAAATC
TTGACGATTCTTATATTTCTCTTTGACAACGTTCAAGCGACTTTCCAATT
CTTTATACCTGTATTTCCCATTATCGCCATATCTAAAGAAATGTTGCATC
GTTTTCCCGTCTAACATTTTATTCTTTCCAATGACCTTCTGGTAATGTTC
AATATAATCAGGGAACGAAGACTTGATAAACGCATACAAAGATGGCGGCA
GTTTGGTGAACCCTTCTACATTATCTAGCGCCGCCACTCGGAGAACTTCA
TGACGAATATAATTATTATATTGTTCGAATTCATCGCCATGCGATTTCAT
TGTAATTCCAGGTTCATTAAACAGAGGTTTATCATTCATAAGAGATTGTA
TAGAAACCAACATGCTTGATATACTTTGAGCTGCTGTCCATTCGGGTCCA
GGCCATGTTCCCAAAATACTTAAACAAACTTTACCATTGGCGTACAGATT
AGGGTTAAATCGGACAACACCATTTCCAGTTGTCATTAATCGGACAAGGG
GTGGCTTAATGGGGTAATCAGCCGTCACTCTGatgaagaaataaaagaaa
CCGCCCTCGTAAGGAGTTCCTTCTGGTCCGCAAATTATAGCATAGATTTG
TGTCAAATCATCGTCGTCAGGGGCAACAAAAACAAACGGAATCGGCTCAC
ggtaaatattttcaatgtcctttttcaatcttttcatGAAGAACGAAGAT
GGTTTTTCAGCCATTTGATATTTCATTGGGTCCCATtgttgctttgtaac
gtctttcgattttttctgctttttcgcAGGTTTTTCTGATGTGCTGGTAT
CAGTGGTTGACGATGAGCTTGGTTCTGCATCGAATGTCAAGTCAACATAA
TTTGATGTAGTTGGGACTGTTCCAACAACATTTGAtgccatttttttctc
tttctgtttcaatttttagaGTACTCTAAATGTAAAAAGAAATAATTGAA
ATCGATTTTATAGCctatgggcttttccagaaaaaacgtACACCCTTTTG
AGGATTTTCTTTCTAAGGGGGTAAGGTTAGGTATGCGAGGAATTCTATA Run BLAST on NCBI transcript from alignment at sc0000070:347378..349233- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006788 ID=TCONS_00006788|Name=TCONS_00006788|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at sc0000070:347378..349233- (Clytia hemisphaerica)
CACGATTTTGTGCCTTTTTACGCCAAACTTTACATTGGTTGCAAACTTTT
TGCATTTTGGTTGTCCAAATACCCCTTTTTGATTGATGCTATACTTTTAA
AATGTTTACTTTAAAAGTGGTTATTTACATTTTTCGACATTTTCTCAAAA
ATATTTCGCGAGTAAGGCCTTTCAAAACTTTCATTGGGACTTAATTTGGC
GAATGACATCTAAAACCACGAAATCCGCGAAATTCAATCCCTACGAAAAT
TTATCCGATTTAAGTAATTTTAGGGTGTATAAAAAGCCCCCCCCCGCAAC
CATGCTACTGATCCGCAAAAGTGTTTTTTCCTCAATTGCAAAAATGGCTA
CGTCAGAATTAATAGCCATGTTCTATTTAAGATAACATAAAGATAGCAAA
TAACTATGAAGAGCGCTGTAGTAGATTACGATAATAAGAAGACTTTTAAC
AAGAAATCATTTTTGAAAATAACTATCTAATTCTTTGAATCCCTAAAAAC
ATAGTTAATTCTTTTACTTAGAAGCTCGAATTATAATGTCTCTGATAATA
ATGTTATTACTTCCTCTCATACATGTCCCCAACTTTGTTAATTGGAACCT
ACCCACATCGAGTGGAAAAAGGATTTAAAAATAGAACTTTCACGAATGTT
CTTGAAGGATCTATAACGAATTGTTTCCGTTTTTTAAACCATCCAACACA
ACAAATATAACTTCTCTCTAACCGAAAGTAATATCTTATTTCCTCAAATC
TTGACGATTCTTATATTTCTCTTTGACAACGTTCAAGCGACTTTCCAATT
CTTTATACCTGTATTTCCCATTATCGCCATATCTAAAGAAATGTTGCATC
GTTTTCCCGTCTAACATTNATTTCCCATTATCGGCATATCTAAAGAAATG
TTGCATCGTTTTCCCGTCTAACATTTTATTCTTTCCAATGACCTTCTGGT
AATGTTCAATATAATCAGGGAACGAAGACTTGATAAACGCATACAAAGAT
GGCGGCAGTTTGGTGAACCCTTCTACATTATCTAGCGCCGCCACTCGGAG
AACTTCATGACGAATATAATTATTATATTGTTCGAATTCATCGCCATGCG
ATTTCATTGTAATTCCAGGTTCATTAAACAGAGGTTTATCATTCATAAGA
GATTGTATAGAAACCAACATGCTTGATATACTTTGAGCTGCTGTCCATTC
GGGTCCAGGCCATGTTCCCAAAATACTTAAACAAACTTTACCATTGGCGT
ACAGATTAGGGTTAAATCGGACAACACCATTTCCAGTTGTCATTAATCGG
ACAAGGGGTGGCTTAATGGGGTAATCAGCCGTCACTCTGATGAAGAAATA
AAAGAAACCGCCCTCGTAAGGAGTTCCTTCTGGTCCGCAAATTATAGCAT
AGATTTGTGTCAAATCATCGTCGTCAGGGGCAACAAAAACAAACGGAATC
GGCTCACGGTAAATATTTTCAATGTCCTTTTTCAATCTTTTCATGAAGAA
CGAAGATGGTTTTTCAGCCATTTGATATTTCATTGGGTCCCATTGTTGCT
TTGTAACGTCTTTCGATTTTTTCTGCTTTTTCGCAGGTTTTTCTGATGTG
CTGGTATCAGTGGTTGACGATGAGCTTGGTTCTGCATCGAATGTCAAGTC
AACATAATTTGATGTAGTTGGGACTGTTCCAACAACATTTGATGCCATTT
TTTTCTCTTTCTGTTTCAATTTTTAGAGTACTCTAAATGTAAAAAGAAAT
AATTGAAATCGATTTTATAGCCTATGGGCTTTTCCAGAAAAAACGTACAC
CCTTTTGAGGATTTTCTTTCTAAGGGGGTAAGGTTAGGTATGCGAGGAAT
TCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006788-exon-sc0000070-1575043694:348369..349233 | TCONS_00006788-exon-sc0000070-1575043694:348369..349233 | Clytia hemisphaerica | exon |
| TCONS_00006788-exon-sc0000070-1575043694:347378..348311 | TCONS_00006788-exon-sc0000070-1575043694:347378..348311 | Clytia hemisphaerica | exon |
| TCONS_00006788-exon-sc0000070-1510915933:348369..349233 | TCONS_00006788-exon-sc0000070-1510915933:348369..349233 | Clytia hemisphaerica | exon |
| TCONS_00006788-exon-sc0000070-1510915933:347378..348311 | TCONS_00006788-exon-sc0000070-1510915933:347378..348311 | Clytia hemisphaerica | exon |
| TCONS_00006788-exon-sc0000070-1491911889:348369..349233 | TCONS_00006788-exon-sc0000070-1491911889:348369..349233 | Clytia hemisphaerica | exon |
| TCONS_00006788-exon-sc0000070-1491911889:347378..348311 | TCONS_00006788-exon-sc0000070-1491911889:347378..348311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:347378..349233 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016135 | UBQ-conjugating_enzyme/RWD |
| IPR000608 | UBQ-conjugat_E2 |
Blast
BLAST of TCONS_00006788 vs. Swiss-Prot (Human)
Match: UBE2Z (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2) HSP 1 Score: 234.187 bits (596), Expect = 2.378e-70 Identity = 119/246 (48.37%), Postives = 153/246 (62.20%), Query Frame = -3
Query: 754 WDPMKYQM--AEKPSSFFMKRLKKDIENIYREPIPFVFVAPDDDDLTQIYAIICGPEGTPYEGGFFYFFIRVTADYPIKPPLVRLMTTGNGVVRFNPNLYANGKVCLSILGTWPGPEWTAAQSISSMLVSIQSLMNDKPLFNEPGITMKSHGDEFEQYNNYIRHEVLRVAALDNVEGFTKLPPSLYAFIKSSFPDYIEHYQKVIGKNKMLDGKTMQHFFRYGDNGKYRYKELESRLNVVKEKYKNR 1485
WDP E+ + + R+K+DI +IY+EP P +FV PD D+T+I+A+I GP TPYEGGFF F R DYPI PP V+LMTTGN VRFNPN Y NGKVCLSILGTW GP W+ AQSISS+L+SIQSLM + P NEPG + H + + YN IRHE +RVA D +EG P L ++ SF +Y + Y+ L G+TMQ F G + Y+ L RL ++++K R
Sbjct: 83 WDPTLSSDWDGERTAPQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDSKNYNECIRHETIRVAVCDMMEGKCPCPEPLRGVMEKSFLEYYDFYEVACKDRLHLQGQTMQDPFGE-KRGHFDYQSLLMRLGLIRQKVLER 327
The following BLAST results are available for this feature:
|
