TCONS_00006789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006789
Unique NameTCONS_00006789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006789 ID=TCONS_00006789|Name=TCONS_00006789|organism=Clytia hemisphaerica|type=transcript|length=258bp
AGCAAAAATGATGAATGTCTCACAACACAAGAATGGGAACCAGCTCGACA
ATTTGATTGTCCAGACATGTGTGGAAAAATGGGACCAAGTTTTGATGGCA
ATATGGCGGATCCAGTTCAGCAACGCCATTATGTTGCTTGTTGGCATGGC
GTTACTGTTGGGTGTATCATGTGTCCAAGTGATTTGATTTACAACGAAGA
ACACAATGCTTGTCTTTATGAAGGAAAATATTTCACACAACCAGACCCAA
ACAGTTCT
Run BLAST on NCBI

transcript from alignment at sc0000070:363462..364004-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006789 ID=TCONS_00006789|Name=TCONS_00006789|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000070:363462..364004- (Clytia hemisphaerica)
AGCAAAAATGGTAAGTGTGCAATTGTGAGATAAGCCCGGGGAGGGGGTAA
TTAGGCAAATGGAGGGTACGGTATGTGCCACCCTTAAGGGTACCTTTCTT
GGACTTTCAAAGTCCCACTAAGGGTCGGAAAAATAGGAAAATTTGAACTT
TTTACCCCCTGAAAGATCGAAATTTGGTCAAAATTGGTCAAATTTTTCCC
GCAAAGGGTCGTAAAATTCCCAAAATTTTCCTTTGTTTTCTCCATTTTAG
TCTCCATTTTCGGATGATTAGCTAGCAAATGATTTTATATTTTAGATGAA
TGTCTCACAACACAAGAATGGGAACCAGCTCGACAATTTGATTGTCCAGA
CATGTGTGGAAAAATGGGACCAAGTTTTGATGGCAATATGGCGGATCCAG
TTCAGCAACGCCATTATGTTGCTTGTTGGCATGGCGTTACTGTTGGGTGT
ATCATGTGTCCAAGTGATTTGATTTACAACGAAGAACACAATGCTTGTCT
TTATGAAGGAAAATATTTCACACAACCAGACCCAAACAGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003795XLOC_003795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006789-exon-sc0000070-1575043694:363995..364004TCONS_00006789-exon-sc0000070-1575043694:363995..364004Clytia hemisphaericaexon
TCONS_00006789-exon-sc0000070-1575043694:363462..363709TCONS_00006789-exon-sc0000070-1575043694:363462..363709Clytia hemisphaericaexon
TCONS_00006789-exon-sc0000070-1510915933:363995..364004TCONS_00006789-exon-sc0000070-1510915933:363995..364004Clytia hemisphaericaexon
TCONS_00006789-exon-sc0000070-1510915933:363462..363709TCONS_00006789-exon-sc0000070-1510915933:363462..363709Clytia hemisphaericaexon
TCONS_00006789-exon-sc0000070-1491911889:363995..364004TCONS_00006789-exon-sc0000070-1491911889:363995..364004Clytia hemisphaericaexon
TCONS_00006789-exon-sc0000070-1491911889:363462..363709TCONS_00006789-exon-sc0000070-1491911889:363462..363709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:363462..364004 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.415712	0	7.98369	0	0	4.0985	0	0	0	0.336675	0	0	0.28205	0	0	0.928015	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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