TCONS_00006790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006790
Unique NameTCONS_00006790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006790 ID=TCONS_00006790|Name=TCONS_00006790|organism=Clytia hemisphaerica|type=transcript|length=606bp
agaagacttgaaccaacaaacaacaacaacatgaaATCGACCATCGTTTA
CGCTATTCTCTTCTGCTTGGTAGCAAGTACTCTTGCCATGAAAAATCGCA
ATAAGAAAAACAAGAAGATCAACAAAAATCAACAAGAAGACGATGACAAA
GAATTCGAAGATGTTCTTGGTCTCCAAGATCCTGGATTCCATTGCCCAGA
TTCTCTTTGCAATGGACGTGCTGATGGAAACTATGAATATGCTGGCAATT
CTTCTTACTTTGTTCAATGTACTGGTGGACAAGCCGATTGCCAAGCATGT
TGGCCATTGAATTTGGTTTTCAAAGAAGAATGTAACCAATGCCTGTACAG
CAAAAATGATGAATGTCTCACAACACAAGAATGGGAACCAGCTCGACAAT
TTGATTGTCCAGACATGTGTGGAAAAATGGGACCAAGTTTTGATGGCAAT
ATGGCGGATCCAGTTCAGCAACGCCATTATGTTGCTTGTTGGCATGGCGT
TACTGTTGGGTGTATCATGTGTCCAAGTGATTTGATTTACAACGAAGAAC
ACAATGCTTGTCTTTATGAAGGAAAATATTTCACACAACCAGACCCAAAC
AGTTCT
Run BLAST on NCBI

transcript from alignment at sc0000070:363462..364637-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006790 ID=TCONS_00006790|Name=TCONS_00006790|organism=Clytia hemisphaerica|type=transcript|length=1176bp|location=Sequence derived from alignment at sc0000070:363462..364637- (Clytia hemisphaerica)
AGAAGACTTGAACCAACAAACAACAACAACATGAAATCGACCATCGTTTA
CGCTATTCTCTTCTGCTTGGTAGCAAGTATGTCACCATTTATTTCATTTG
CTTTCAGTAGTAGAGATAGTCAATCAGTGTGTTTTATTACGATTTATGAT
TTTAACGGTTTTCAAAAGGTTGTTAAGGTTCTTTGAACGGACTTCGTCCT
TCGTGCAAACGTATGTATTACTCTAAAAGTCTCCCCTATAATGTTGAATG
TGAAAGGAAAATAAATCTAATCAATTACATTTACTCCACTTCAGGTACTC
TTGCCATGAAAAATCGCAATAAGAAAAACAAGAAGATCAACAAAAATCAA
CAAGAAGACGATGACAAAGAATTCGAAGATGTTCTTGGTCTCCAAGATCC
TGGATTCCATTGCCCAGATTCTCTTTGCAATGGACGTGCTGATGGAAACT
ATGAATATGCTGGCAATTCTTCTTACTTTGTTCAATGTACTGGTGGACAA
GCCGATTGCCAAGCATGTTGGCCATTGAATTTGGTTTTCAAAGAAGAATG
TAACCAATGCCTGTACAGCAAAAATGGTAAGTGTGCAATTGTGAGATANG
GTTTTCAAAGAAGAATGTAACCAATGCTTGTACAGCAAAAATGGTAAGTG
TGCAATTGTGAGATAAGCCCGGGGAGGGGGTAATTAGGCAAATGGAGGGT
ACGGTATGTGCCACCCTTAAGGGTACCTTTCTTGGACTTTCAAAGTCCCA
CTAAGGGTCGGAAAAATAGGAAAATTTGAACTTTTTACCCCCTGAAAGAT
CGAAATTTGGTCAAAATTGGTCAAATTTTTCCCGCAAAGGGTCGTAAAAT
TCCCAAAATTTTCCTTTGTTTTCTCCATTTTAGTCTCCATTTTCGGATGA
TTAGCTAGCAAATGATTTTATATTTTAGATGAATGTCTCACAACACAAGA
ATGGGAACCAGCTCGACAATTTGATTGTCCAGACATGTGTGGAAAAATGG
GACCAAGTTTTGATGGCAATATGGCGGATCCAGTTCAGCAACGCCATTAT
GTTGCTTGTTGGCATGGCGTTACTGTTGGGTGTATCATGTGTCCAAGTGA
TTTGATTTACAACGAAGAACACAATGCTTGTCTTTATGAAGGAAAATATT
TCACACAACCAGACCCAAACAGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003795XLOC_003795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006790-exon-sc0000070-1575043694:364562..364637TCONS_00006790-exon-sc0000070-1575043694:364562..364637Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1575043694:364062..364343TCONS_00006790-exon-sc0000070-1575043694:364062..364343Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1575043694:363462..363709TCONS_00006790-exon-sc0000070-1575043694:363462..363709Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1510915933:364562..364637TCONS_00006790-exon-sc0000070-1510915933:364562..364637Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1510915933:364062..364343TCONS_00006790-exon-sc0000070-1510915933:364062..364343Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1510915933:363462..363709TCONS_00006790-exon-sc0000070-1510915933:363462..363709Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1491911889:364562..364637TCONS_00006790-exon-sc0000070-1491911889:364562..364637Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1491911889:364062..364343TCONS_00006790-exon-sc0000070-1491911889:364062..364343Clytia hemisphaericaexon
TCONS_00006790-exon-sc0000070-1491911889:363462..363709TCONS_00006790-exon-sc0000070-1491911889:363462..363709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:363462..364637 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.435273	0.312545	0	0	0.48813	0.604469	0.452692	0.485766	0.280097	11.2336	0	0.163369	0.893607	0.518127	0.187967	0	0	0.419119	0	0	0.318008	0.0970739	0	0.179624	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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