TCONS_00006793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006793
Unique NameTCONS_00006793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1044

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006793 ID=TCONS_00006793|Name=TCONS_00006793|organism=Clytia hemisphaerica|type=transcript|length=1044bp
CATTGTTATTAAGAAGTTATATCAGGGCATGTCTTATTAGTCCAGATGAT
TTAGTTGAAATCTCACTCTCTGAAACATGGAAAATTGAATTCCCAACAAA
CTAAAACTTGCTATTGGAATGAATCGTACGACACATTATACCCACCATCC
TCTGCTTCCTCCTTCACACTACCGATGCAAATCAACGATCGGCTTATTGC
ACGTTCCCGATCGGGATCCATAGAAACCACGTCATCACAAGGACTTCAAC
CACCCTTCATGGGACCAAACTCAAAGAGACGGAAAGCTCCTGATAAATCA
AGATCTAGCTCCTCGGCTTCGAATAGTTCCAGAGCTTCACGAACAGGAAG
TGGGGCTAGTGACGGATCATATTACGTCCCACGGGCTGCGCGGTACAACA
GTCCAACGTACGATTACCGAGAGAGTGGCTattttcatgacgtcataagA
GCGAAACAAGTGGAATTTGAACGTGAAGGGATAGCTTACGACGAACCTGA
CGATTATAATGATGGACACGCTCATACGAATCAAGGTCATTCTCCACCAT
ATAAAGAAGAAAACGTTCCAACAAAGAATTTCACATACATGGATGTCAAT
GATATCGCTTTCACCAGGAAAGGATCGCCCATATTCTTCGAGGTTGACCC
TGAAGTTCCCAGCAACATGCAAAAACGTCCTGTCACTGGACCTGGACTTG
AATCTGATCCCGCAATCGTTGACCCGCAAAAAGGCACACCCGAAACAGCT
ACCCTCGAAACTGACTTACCGGCTTATTAAAGTAAAGTATAGAATTTAAT
GCACAATATTTCTTATTACCTTGTATGGCACCTTTGATACTTAAAAAAGA
ACGGCACGTTATATTATAGAATTTGACCTAAATTACATAAACAATCATGG
TCTAAATAAATTGAGATTTTTGtgcattttaacgtttttcagccATTTAA
AGTCCGGGCGAGAATAGTTATTTTAGCatttccactttctttcattgaat
atttcgattttggaggggttccGTTGcctctaggctatattcca
Run BLAST on NCBI

transcript from alignment at sc0000070:451396..457428-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006793 ID=TCONS_00006793|Name=TCONS_00006793|organism=Clytia hemisphaerica|type=transcript|length=6033bp|location=Sequence derived from alignment at sc0000070:451396..457428- (Clytia hemisphaerica)
CATTGTTATTAAGAAGTTATATCAGGGCATGTCTTATTAGTCCAGATGAT
TTAGTTGAAATCTCACTCTCTGAAACATGGAAAATTGAATTCCCAACAAA
CTAAAACTTGGTAAAGCACTTTCTCTACTAGAAAAAAATCGTCGATAGGG
CGCTAACGAAGGATCGTTGGAAGGGGTGGATGATTTCTTCATATATCACC
ACCTCTAATTTCTTGAGCTTCAGTATGCTGCAGTAAAGTGTCGGCTTGTT
GGGGCTTTCATCCACGTAAAACACCAATAGTCGGGCTATACCAAAGATTA
TCAAAATGGTACTTGATGCATCTCTGCTTGATGCTCAGCAATTAAGAGAA
GGGTCAGGAGTAAGAGGAGCAATCCAGGGAGAAAGTGTGGCGCGCTCCCC
TACCTTCGGGTAGCCATAGCTATCGAAAAAGGAGCCTTTGGGTCGCCTCC
GAATGCAGTCACAGACTTACTTACTCACTTACTGCAGTTATATCTCTGAT
GCAGGGTTTTGAGTGTATGATTTGGAGGCAGATATTGATACAGGTTAGCT
TTGGCGGGAGGGATTAGTGTCAATGATGATATGGTTTTCTTTACCCCCCT
TATCCCCCTATTATTAGCTGGAACTAAAATAAGAAAATCTTTTAGCCTTC
ATCATTTGCTATTATCAGAAAAAATTTGCCGTGAGGCCTGCGCTCTTCGA
TTCCATTTTTAAATTCATCTCCATACCTACTTTAATTTCTTTAGCTATTG
GAATGAATCGTACGACACATTATACCCACCATCCTCTGCTTCCTCCTTCA
CACTACCGATGCAAATCAACGATCGGCTTATTGCACGTTCCCGATCGGGA
TCCATAGAAACCACGTCATCACAAGGACTTCAACCACCCTTCATGGGACC
AAACTCAAAGAGACGGAAAGCTCCTGATAAATCAAGATCTAGCTCCTCGG
CTTCGAATAGTTCCAGAGCTTCACGAACAGGAAGTGGGGCTAGTGACGGA
TCATATTACGTCCCACGGGCTGCGTGAGTTTATTTTCTTCTTTCAGTGTT
TAAAAATCTTATGTTTCAGACTGACTTTCGTCTCAGCAAGACGTATATTC
AAGCCGTACAAACATTCGCGAAAAGGTCGGAAACGGTCGCGAAAAGGTCG
GAAACGGTCGAAAATATTATAAGGGGCATTCGCGAAAGTTTATGCACGCG
AAAAATTGTCGACAAAATAGAAAATATGTAAAACTAGCCGGTACCCGGCG
TCGCACGCCGGTTAAGCTGTAGCTGACACACTAAAAGTCCTTTGGATGTT
GAAGCTGGCTTAAAAAATGATCAAATTAATAAAAAGATATCTTCAAAGTT
TGACTCTAACCAGTGGCGGCCTGGCAGGGGGTGCAGGGTGTGCAGTGCAC
CACCCAGAAAGACCTGAGAGGGGCGCCAAAAAAGCTTTTCAAGGGGGCGA
AACATTCNTGACTCTAATCAGTGGCGGCCTGGCAGGGGGTGCAGGGTGTG
CAGTGCACCACCCAGAAAGACCTGAGAGGGGCGCCAAAAAAGCTTTTCAA
GGGGGCGAAACATTCGCCAAAATTCTTTTTGATGTTTAGTTGGGCGATTT
TGCGATCTTTGACACGTTTTAAGCGCCTTCTATAAGTGCAATGTAAGTTT
TATTTTACGATTTCAAAACTACTATCAACATTGAATTGCGAAAAGTCAAA
GCAAGAGAAGTGTTATGTATCCACCAGGGGTTAAAGAGGATGCTCACCCC
CAAAATGAGAGATTGATCGAAACTGCTCGCTGTGGTTTTTGTGGTCTTAT
GCGAACTAACTTTCTCCTTTTTAGAATATCTTATAAGCTGTTTGACCTTT
CTTACACCAAATTTTTTTGCCTGCGGCGCCAGAATTACAAACATCCCTTA
TTCTTGCCAACTTGTTGAATTTTAGGGGGCCTCTTTCAGCCATTGATCTT
TAATCGAGAGTAAAGTAAGACCAGGAAATAACAAGGAAATAGATATCAAA
TTATCATTACCACTTACACCACCTTCGTATAAATAAAAGTTTGTTAACTC
AGGGATTCCGGGCGTTACTTTCAACCAGTCACTGCTCTTACAGTTTAATA
GTTTCACTTAATGGTATAGGGCGCAAATAAGGACAAAAAAACCAGGGGCG
CCAATTTCATAGTTTGCACCACCAAGACAATTAAGCCAGGCCGCTACTGA
CTCTAACCCTCGAACCCTCCCCCGGAGATCTTTTTCTCGCTTCGCTCGCA
TTAAATACGCCGTCCAGCTTTCGACAATTTGAGAAAATGTCATGGTAAAG
AGGAGTGAAATGTAGACATGACAATTCTTTATGAAAAAGCGGGAAAGCCA
CAAAGAATAGTGCAACTTTCGAACTTTGTTTTTATCAGATTTAAAAAGGT
AAATAAGTCAATTCTAAATTGCTTTTTTTAAAACTTTTTAATTTTCATGT
TTTGATTTACATTTGAAATGTTCTTTTCTATAAAAGAAACTTGTTTTGTT
TTGAAAAGAATTCGAATGTCATTAATAAATACGATCGTTAAATACATTCG
CGAAAATATTTCAAACAAAAGAAAAGAAAAAACAGGATCGGCCAAAGCTG
GGCAGAAATTAAAATTACTAAATGTAGATGGGCCTTAAATTTCAAAACAA
AGGCTGAACAAAGTCTAAACCATGCTCTATTCGATCTGTCAATCAAAGCA
AACTTATCGAGAACAAAACATTGCTTGCGAAATAGAAAGTGTGCAAATCG
CGCGAATCCAATAGAACAAATTTGTGGAGCAAGAGACTAAAAGTCATAAT
TTTAAAACACAAACAAAGCGAAAACGAAAGTGGTGACACACAGACACACA
AAGCACCGCTATTAATATATAGACTTCTGACTTAAAATTAAATGTGGGAT
TTATGGTGTCTTTTAGCCTGTTAAAGCCTCGTGAGTCAAAAGACAAATTT
TTCAACCCATGTCAAGAAGTATTTGTCCTTCGAAACCATCTTTTCTTGTG
AAAATATTCATTTTTATGTCTTGATTCACGAAGGTTTATGCTCGCGAGAA
GGATTTCTTTTCAAATTCGCAGAAGTAAATTTATTCCGGTAAATTTTGCG
ATTTTCAGACCCCGCTAAGGTTTCTGCTCGCAAGTTTGTACGCCAAAAGT
AGGCTTTCCATCTCAATTTTCAGTGAAACTTTATATGAAACATGAATCTT
GGTGTGTTAATAAATTTTCCATCCAATGATTATAAAGAGTCACGCATAAG
AGCCTTTCCTGGAGAAAAAAAACGAGACACTCAATTCTTTTCATTTCAGG
CGGTACAACAGTCCAACGTACGATTACCGAGAGAGTGGCTATTTTCATGA
CGTCATAAGGTAAGAATTTTAACACACACCCCCTTTTTGAGCCATTGGGG
GTAAAAGTAACGGACTGAAACTCGATGGGGATTGATATTCCCATGTTTTT
CATGAATTCCATTATTTTCGAGTCAGAAGATTTAGTGGGGATGTAGAGTG
GATCTCCAGAGTTTACTTTGATATTTTTTGATAATAAAACATATCAGAGG
AAATGTGTGCAGCCTAGTGGGGATTGAGAAACTAGCACAAATTTGTTTTC
AGTGAGGATCTGCTCATCTGATTATTTTCAGCGTGGACAAAAATAAGAGT
ACGATGAAGAATTAATTGCCAAATAGAAACTCTGAAAAACCTTATTATGC
TATTGACTTGTTTGAAGCAAACAGTACAACCTTTAAAAGTTCACCTCTAA
TGGTTTTAACTAATTTCTTACCCTAATGAAAAGCCATAAAAATCACAAAA
TCAGGCGTATCTATTGTGACACCCTGTTTCACAGCCTCGGTGGAACTTTT
TCCTAAAAGCGGGAATAAAAAGTGTCTACTGAAATTCCAATCGGGATGAA
AATTCTATTGTGCCAAGGTTAAAAAATCCAGCGTGACGGTTTTGGAGTGC
AATATCTAAACATTGAATTTCGAATGGGGATAAAATTAAAGTAATTTTCC
CAATGGAGCTAAAATTCTAGGATATTTTTCCCACCGGGAACGAAATTTTT
GCCAAATTTTCTAGTGGGGTGGTGGTCCCAGCGGGTCTGTAACACAGGGG
TGTATTGTGAAAGGACGGTTAAGTAAATCAGGCCTTGGTGCTTTAAGACT
TCTCGGTAATTCAAATATTTGTAATCTTCAATTTATTACAGAGCGAAACA
AGTGGAATTTGAACGTGAAGGGATAGCTTACGACGAACCTGACGATTATA
ATGATGGACACGCTCATACGAATCAAGGTAGAGTTTTATAGATATATCAT
ACTTTCTCTTAACTACCACTCTCCAATATACAACTCAATATCCACATAAA
GGCCATCCCTAAAGTTTCAGATATTTTCTTGAAAATGATGTGCGAAAACC
TCTTTGGAGAAAATAAAAATTTTTAGAACACCTGGAAACTTTTCTTAAAA
ATTTGAATACGGGGATGGAGGATATAGCATTTTTTGAAAATCTACCCCCA
CCCCCGGACATTGTGAATTTTGTCTCCCGGACAACAAATCTTACCCCCCA
AACAAGCATCAGTTGACCCCACAGACATTTAAAATCACACCTCTGATCAG
AGCAAGTTTTCCTCAAAACAAAGCAAGTATTGCAGATTTTTCACTACCCC
TGGACAAAATATCCAATATATCCTCCACCCCATGTACAAATATTTTCTGG
CTGAGCCCAATGCATCCTAAAAATGTTCATCCCTTTGATTTAAGTATAAA
AAATGTCAACATTGAATTTTCATGTAATGACAATTTCTCCGTGTACACAA
TTTTTTTCGTTATAAGCACTACTTCTTTATCAAGCTCTCAGAATGCTTAA
CATTCCATTTTTCTTAAACAATCGAGCCATTTTTAGGTATCAAGAACTGA
GCCTGCATATGCTTATAAACGTTATGCTTATAGAAATCTTTTCTTTTTCT
TCGTTTAGGTCATTCTCCACCATATAAAGAAGAAAACGTTCCAACAAAGA
ATTTCACATACATGGATGTCAATGATATCGCTTTCACCAGGAAAGGATCG
CCCATATTCTTCGAGGTTGACCCTGAAGGTTGGTACTTTCCCTTTCAGCC
GCCCACACGCCCTTTTTTATTTATTTCTTATCTACGTGTTTACATAACAC
GAACCTCTATAACTCGAACAAGTTTTTTCTTCCCTTAAGTTAACAAGGAC
TGCGGAGTGACTAAAAACTGAACAACCCGCAGTTCTGACCCACAAAATCG
GGGATATGGTGAAAATGTACTGATTTATCGTCGTTCTTAGTCAAGTCAAG
GTGTAAATAAATCATAGCTAACCGTCTCTGTCACAGCAAAAAACACACTT
ACACGCTTTTTTTATAAGAATAACTTCTATAAAAATGTCGTTAAGATGTA
ATAAAAGAATCTTATTACTTTTTCTAAAGAACGCGTCATCTCTATCACTT
TAAATGACCAATTAGTGAAGTATCTTGTAAAATCTCCAGCTCATCCCGAG
ATTTCAGAGTCAGCACAATAGGCCTTTTGTTTAGAACAATAGGAAAATAA
GAATACTGCTCACCCTCAGCCAAAGAACACTATTTTTATTAAAAAAGCCA
TCGTTTCAGATTCCCAATAAATTTACTTTCCATATTTCTTTCAGTTCCCA
GCAACATGCAAAAACGTCCTGTCACTGGACCTGGACTTGAATCTGATCCC
GCAATCGTTGACCCGCAAAAAGGCACACCCGAAACAGCTACCCTCGAAAC
TGACTTACCGGCTTATTAAAGTAAAGTATAGAATTTAATGCACAATATTT
CTTATTACCTTGTATGGCACCTTTGATACTTAAAAAAGAACGGCACGTTA
TATTATAGAATTTGACCTAAATTACATAAACAATCATGGTCTAAATAAAT
TGAGATTTTTGTGCATTTTAACGTTTTTCAGCCATTTAAAGTCCGGGCGA
GAATAGTTATTTTAGCATTTCCACTTTCTTTCATTGAATATTTCGATTTT
GGAGGGGTTCCGTTGCCTCTAGGCTATATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003797XLOC_003797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006793-exon-sc0000070-1575043694:457319..457428TCONS_00006793-exon-sc0000070-1575043694:457319..457428Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1575043694:456406..456684TCONS_00006793-exon-sc0000070-1575043694:456406..456684Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1575043694:454070..454129TCONS_00006793-exon-sc0000070-1575043694:454070..454129Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1575043694:453152..453237TCONS_00006793-exon-sc0000070-1575043694:453152..453237Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1575043694:452351..452470TCONS_00006793-exon-sc0000070-1575043694:452351..452470Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1575043694:451396..451784TCONS_00006793-exon-sc0000070-1575043694:451396..451784Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1510915933:457319..457428TCONS_00006793-exon-sc0000070-1510915933:457319..457428Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1510915933:456406..456684TCONS_00006793-exon-sc0000070-1510915933:456406..456684Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1510915933:454070..454129TCONS_00006793-exon-sc0000070-1510915933:454070..454129Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1510915933:453152..453237TCONS_00006793-exon-sc0000070-1510915933:453152..453237Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1510915933:452351..452470TCONS_00006793-exon-sc0000070-1510915933:452351..452470Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1510915933:451396..451784TCONS_00006793-exon-sc0000070-1510915933:451396..451784Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1491911889:457319..457428TCONS_00006793-exon-sc0000070-1491911889:457319..457428Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1491911889:456406..456684TCONS_00006793-exon-sc0000070-1491911889:456406..456684Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1491911889:454070..454129TCONS_00006793-exon-sc0000070-1491911889:454070..454129Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1491911889:453152..453237TCONS_00006793-exon-sc0000070-1491911889:453152..453237Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1491911889:452351..452470TCONS_00006793-exon-sc0000070-1491911889:452351..452470Clytia hemisphaericaexon
TCONS_00006793-exon-sc0000070-1491911889:451396..451784TCONS_00006793-exon-sc0000070-1491911889:451396..451784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:451396..457428 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.4977	1.9164e-06	4.28216	1.53799	0	0	2.35556	2.13992	2.38898	2.04925	0	2.98971	3.79927	2.983	0	0.309236	0.856473	0.0623151	7.95215	12.1687	1.01061	1.479	0	0	3.43184	4.33076e-10	0	3.60078	0.539529	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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