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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006800 ID=TCONS_00006800|Name=TCONS_00006800|organism=Clytia hemisphaerica|type=transcript|length=366bp
attttatgcAAATCGTCAATTTCAGcaAGCGACCTGGTTTCTTTTAACGG
AGTTGAATATTTCTTCGGAATCGAAGAAAAAGAATGGGGATCAGCAGAAA
ATGATTGTGTCACACGTGGAGGTCATTTGACCAGCATCTTTTCaagagaa
gaaaatgatttcttgtttcaacaaattcaacagaaatgGTATCCTGGACA
GGGTTATATAAATTCTGGTCCTTGGCTCGGTGGAGTCGAACGCAATGACA
CATGGATTTGGGCTGATGGGACCACGCTTGAAAGTAGTTTCGATGCATGG
CACCCAGGCGAGCCGAGCGGAGGAACAGAAGGTTGTATGCAATTCTTTGC
GAATGATTTTTGGAAT Run BLAST on NCBI protein sequence of TCONS_00006800-protein >TCONS_00006800-protein ID=TCONS_00006800-protein|Name=TCONS_00006800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
ILCKSSISASDLVSFNGVEYFFGIEEKEWGSAENDCVTRGGHLTSIFSRE
ENDFLFQQIQQKWYPGQGYINSGPWLGGVERNDTWIWADGTTLESSFDAW
HPGEPSGGTEGCMQFFANDFWN Run BLAST on NCBI transcript from alignment at sc0000070:540718..542247- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006800 ID=TCONS_00006800|Name=TCONS_00006800|organism=Clytia hemisphaerica|type=transcript|length=1530bp|location=Sequence derived from alignment at sc0000070:540718..542247- (Clytia hemisphaerica)
ATTTTATGCAAATCGTCAATTTCAGGTAGGTCGATGATGAAGAACCAAAA
ATCCTCACTTTTACCATCTTTAAAGTCCATTTGCTTTAAGCTTTCAAACC
TTTTTAATACCACGTGGAAACTATGTCTGCGTAACGAGAATACTTCCCTC
TAGACTGGTTTTCATGCAAGTTTAATTTGTATTGATGTTAGTTCTAATTA
TTAATATATCGAGAAATAAAGAACTTATAACACAGCAATGCATTGCAGAA
ATTCTTTATTTCTCTATCGACAATGATTTCTTGATACTTTTCGATATCTT
GCTTGATNAATTCTTTATTTCTCTATCGACAATGATTTCTTGATACTTTT
CGATATTTTGCTTGATTTTTTCGAATTTTCTTTAGCCTTTTGGGATTCTA
TTTACTTCAATATGTTTATTGAAACATAAAATTTTAAAGCCCAAACTCAG
ATTCTTTTTTGTTTTCAGCAAGCGACCTGGTTTCTTTTAACGGAGTTGAA
TATTTCTTCGGAATCGAAGAAAAAGAATGGGGATCAGCAGAAAATGATTG
TGTCACACGTGGAGGTCATTTGACCAGCATCTTTTCAAGAGAAGAAAATG
ATTTCTTGTTTCAACAAATTCAACAGAAATGGTTTGTTTTTTATGCTTTT
TCAGATTGCCAGTTTTAACGTTATCATATTTTCATGAATTAGGGAAGGGA
ATACTTTGTCTAATAGATGGTTTTATTTTATACACGTTTTTTTTATATAA
GAACATGAGGCTTCAATTACCAAAATATTTAGAACAAGTTGAGAACATCT
TAAGGCTTCGCGAACTCTAAAACACCCATTTTCCTAGGAAAATGGACAAA
AATTACCAAAAAATGGTGAAAATAAGAATATGTTAAGAACATTTCTATCC
TTAAAACTCAAAAGTCAGGAATATCCGAAGGCTTAAAAATTTTGGATGTT
GTTATATAAAAAACGTGTATGCCGTCCTTATTGTCGCGCTTGCATAAACG
GGGTCTGATGCATTGTTGTCTGATATTCTAATGGTAACTGCCCATGAAAA
TATTTTGGTTAGACTTATCGATCCCCGAAAACGAGTGCTGATGTTCAGGT
TTCCCACTATAAAATTTATGTGACGCGGCCTGGTGAAATTCTATGCAAAC
CTTTCAAATGTTGATGATTCTTCCTACCGTCAGATCTTTAGCGTAAAAAT
TTATGCATCGGGCTGTTAGATGAGACACATAAAATCTTTTTGTGAAATTT
ACTATGATACGAATCTTTAGAACAACTATAGCCTTTCACAAAACCATCAA
TTCATAACTTAAATGTAAATAAAATTCTCACACTATACTTTTACTTCTTC
AGGTATCCTGGACAGGGTTATATAAATTCTGGTCCTTGGCTCGGTGGAGT
CGAACGCAATGACACATGGATTTGGGCTGATGGGACCACGCTTGAAAGTA
GTTTCGATGCATGGCACCCAGGCGAGCCGAGCGGAGGAACAGAAGGTTGT
ATGCAATTCTTTGCGAATGATTTTTGGAAT Coding sequence (CDS) from alignment at sc0000070:540718..542247- >TCONS_00006800 ID=TCONS_00006800|Name=TCONS_00006800|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at sc0000070:540718..542247- (Clytia hemisphaerica)
ATTTTATGCAAATCGTCAATTTCAGCAAGCGACCTGGTTTCTTTTAACGG
AGTTGAATATTTCTTCGGAATCGAAGAAAAAGAATGGGGATCAGCAGAAA
ATGATTGTGTCACACGTGGAGGTCATTTGACCAGCATCTTTTCAAGAGAA
GAAAATGATTTCTTGTTTCAACAAATTCAACAGAAATGGTATCCTGGACA
GGGTTATATAAATTCTGGTCCTTGGCTCGGTGGAGTCGAACGCAATGACA
CATGGATTTGGGCTGATGGGACCACGCTTGAAAGTAGTTTCGATGCATGG
CACCCAGGCGAGCCGAGCGGAGGAACAGAAGGTTGTATGCAATTCTTTGC
GAATGATTTTTGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006800-exon-sc0000070-1575043694:542223..542247 | TCONS_00006800-exon-sc0000070-1575043694:542223..542247 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1575043694:541617..541779 | TCONS_00006800-exon-sc0000070-1575043694:541617..541779 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1575043694:540718..540895 | TCONS_00006800-exon-sc0000070-1575043694:540718..540895 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1510915933:542223..542247 | TCONS_00006800-exon-sc0000070-1510915933:542223..542247 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1510915933:541617..541779 | TCONS_00006800-exon-sc0000070-1510915933:541617..541779 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1510915933:540718..540895 | TCONS_00006800-exon-sc0000070-1510915933:540718..540895 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1491911889:542223..542247 | TCONS_00006800-exon-sc0000070-1491911889:542223..542247 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1491911889:541617..541779 | TCONS_00006800-exon-sc0000070-1491911889:541617..541779 | Clytia hemisphaerica | exon |
| TCONS_00006800-exon-sc0000070-1491911889:540718..540895 | TCONS_00006800-exon-sc0000070-1491911889:540718..540895 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:540718..542247 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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