TCONS_00006810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006810
Unique NameTCONS_00006810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006810 ID=TCONS_00006810|Name=TCONS_00006810|organism=Clytia hemisphaerica|type=transcript|length=564bp
GAAATGTTGAGCAGGCTGGGGCGGTTTAGGTGTTATGAAGTTGTTGTGCA
TAGGTGAAGTTTCCATAACAATAGAGCCAAAAGAGAGGGCGTTGTTGAAA
GTTCCACCCTGCTGTTGCACGCCTCTTTGTTGGGCGGGAGGTGGTCGGTG
TTGAGCGGGGTGTTGAGCTAACATGTTGTCAGCATGAACGGGTTGTGATT
TGAACCACATGCCAGATCTCATAGAGGGCGGTTGTTGGGCGTTATTAACC
TGTTGCTGCATCAAGACTTGCGGAGCACTAGGCTGTGTTTGTTGGGGTGG
AGGTTTACTTATTTGAAATCCACGCATTTGTTCGTTCATTTGTCGGAACT
CAGGCGAGTGCTGAGGCGCAGATTTAGACAAGTTTCCAGCTAGTTGAGCA
GAGATGTCAAAAGTGGGAGTTTCGAGAGAGCGAGCAACCGCTTCTTGTTG
TTGGTGATTGTGAATACCAGAAGAAGGGTAGATGTCAGGTGTTGGTCGCG
ATTCTTTGAACATACCAACACTGGTTAAAGGCATACTTGGTGAACCGACA
CTCAAGTTATCAGC
Run BLAST on NCBI

transcript from alignment at sc0000070:751030..751656-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006810 ID=TCONS_00006810|Name=TCONS_00006810|organism=Clytia hemisphaerica|type=transcript|length=627bp|location=Sequence derived from alignment at sc0000070:751030..751656- (Clytia hemisphaerica)
GAAATGTTGAGCAGGCTGGGGCGGTTTAGGTGTTATGAAGTTGTTGTGCA
TAGGTGAAGTTTCCATAACAATAGAGCCAAAAGAGAGGGCGTTGTTGAAA
GTTCCACCCTGCTGTTGANAGGTTTCCATAACAATAGAGCCAAAAGAGAG
GGCGTTGTTGAAAGTTCCACCCTGCTGTTGCACGCCTCTTTGTTGGGCGG
GAGGTGGTCGGTGTTGAGCGGGGTGTTGAGCTAACATGTTGTCAGCATGA
ACGGGTTGTGATTTGAACCACATGCCAGATCTCATAGAGGGCGGTTGTTG
GGCGTTATTAACCTGTTGCTGCATCAAGACTTGCGGAGCACTAGGCTGTG
TTTGTTGGGGTGGAGGTTTACTTATTTGAAATCCACGCATTTGTTCGTTC
ATTTGTCGGAACTCAGGCGAGTGCTGAGGCGCAGATTTAGACAAGTTTCC
AGCTAGTTGAGCAGAGATGTCAAAAGTGGGAGTTTCGAGAGAGCGAGCAA
CCGCTTCTTGTTGTTGGTGATTGTGAATACCAGAAGAAGGGTAGATGTCA
GGTGTTGGTCGCGATTCTTTGAACATACCAACACTGGTTAAAGGCATACT
TGGTGAACCGACACTCAAGTTATCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003809XLOC_003809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006810-exon-sc0000070-1575043694:751599..751656TCONS_00006810-exon-sc0000070-1575043694:751599..751656Clytia hemisphaericaexon
TCONS_00006810-exon-sc0000070-1575043694:751030..751535TCONS_00006810-exon-sc0000070-1575043694:751030..751535Clytia hemisphaericaexon
TCONS_00006810-exon-sc0000070-1510915933:751599..751656TCONS_00006810-exon-sc0000070-1510915933:751599..751656Clytia hemisphaericaexon
TCONS_00006810-exon-sc0000070-1510915933:751030..751535TCONS_00006810-exon-sc0000070-1510915933:751030..751535Clytia hemisphaericaexon
TCONS_00006810-exon-sc0000070-1491911889:751599..751656TCONS_00006810-exon-sc0000070-1491911889:751599..751656Clytia hemisphaericaexon
TCONS_00006810-exon-sc0000070-1491911889:751030..751535TCONS_00006810-exon-sc0000070-1491911889:751030..751535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:751030..751656 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.60465	6.46703	1.38367	0	0	0	0	0	5.95671	7.24625	4.91389	4.17466	2.50907	4.85801	4.99154	4.35959	5.39663	7.60029	7.67962	4.17419	0	4.25373	1.73716	0	2.60423	0	0	3.36156	5.53135	0.976514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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