TCONS_00006822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006822
Unique NameTCONS_00006822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006822 ID=TCONS_00006822|Name=TCONS_00006822|organism=Clytia hemisphaerica|type=transcript|length=574bp
CGGCGTCAAATTCACCAAAGCCATCGACCTCGCCGGGAATATTTATTCCA
CTAATACATTCACAAAGACCTTCAACTCTGCCAGCAGATTCACAACCCAA
TTAACAAATTTGCAAAACCCACCTTCTTTATCAACAGATTTACAAAAGCT
CTCAACTAAGCATAACCAAATCGACCCATCCATCAACACTCCATTAACCA
TACAATCAACTTCCACAAAAACCATTAACTTCACCAAAATATTCATATAT
TACCAATGTCCTACCCTCATTTTGATCACCAACAATGAACCACAGTCTCG
ATCAACAGataaccaaaatatttttattttcaatccaaccaaaagattca
ccaaaaccatttaatttcatcaaaaataattgaccaaaaccatcaacttc
ACCAAAAGTTTTATCAAAATCATCGTCTTTTTTacctagattacccaggt
gtttctgtctttttttccctgaatgtcttttattcggaattgaataatcg
agacatgaaaaatgactatattgtaatctgttttcaatgaataatctaaa
atgtactggagatgactaaggcta
Run BLAST on NCBI

protein sequence of TCONS_00006822-protein

>TCONS_00006822-protein ID=TCONS_00006822-protein|Name=TCONS_00006822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
GVKFTKAIDLAGNIYSTNTFTKTFNSASRFTTQLTNLQNPPSLSTDLQKL
STKHNQIDPSINTPLTIQSTSTKTINFTKIFIYYQCPTLILITNNEPQSR
STDNQNIFIFNPTKRFTKTI
Run BLAST on NCBI

transcript from alignment at sc0000070:373114..373687

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006822 ID=TCONS_00006822|Name=TCONS_00006822|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0000070:373114..373687 (Clytia hemisphaerica)
tagccttagtcatctccagtacattttagattattcattgaaaacagatt
acaatatagtcatttttcatgtctcgattattcaattccgaataaaagac
attcagggaaaaaaagacagaaacacctgggtaatctaggtAAAAAAGAC
GATGATTTTGATAAAACTTTTGGTgaagttgatggttttggtcaattatt
tttgatgaaattaaatggttttggtgaatcttttggttggattgaaaata
aaaatattttggttatCTGTTGATCGAGACTGTGGTTCATTGTTGGTGAT
CAAAATGAGGGTAGGACATTGGTAATATATGAATATTTTGGTGAAGTTAA
TGGTTTTTGTGGAAGTTGATTGTATGGTTAATGGAGTGTTGATGGATGGG
TCGATTTGGTTATGCTTAGTTGAGAGCTTTTGTAAATCTGTTGATAAAGA
AGGTGGGTTTTGCAAATTTGTTAATTGGGTTGTGAATCTGCTGGCAGAGT
TGAAGGTCTTTGTGAATGTATTAGTGGAATAAATATTCCCGGCGAGGTCG
ATGGCTTTGGTGAATTTGACGCCG

Coding sequence (CDS) from alignment at sc0000070:373114..373687

>TCONS_00006822 ID=TCONS_00006822|Name=TCONS_00006822|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000070:373114..373687 (Clytia hemisphaerica)
ttaaatggttttggtgaatcttttggttggattgaaaataaaaatatttt
ggttatCTGTTGATCGAGACTGTGGTTCATTGTTGGTGATCAAAATGAGG
GTAGGACATTGGTAATATATGAATATTTTGGTGAAGTTAATGGTTTTTGT
GGAAGTTGATTGTATGGTTAATGGAGTGTTGATGGATGGGTCGATTTGGT
TATGCTTAGTTGAGAGCTTTTGTAAATCTGTTGATAAAGAAGGTGGGTTT
TGCAAATTTGTTAATTGGGTTGTGAATCTGCTGGCAGAGTTGAAGGTCTT
TGTGAATGTATTAGTGGAATAAATATTCCCGGCGAGGTCGATGGCTTTGG
TGAATTTGACGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003821XLOC_003821Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006822-proteinTCONS_00006822-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006822-exon-sc0000070-1491911889:373114..373687TCONS_00006822-exon-sc0000070-1491911889:373114..373687Clytia hemisphaericaexon
TCONS_00006822-exon-sc0000070-1510915933:373114..373687TCONS_00006822-exon-sc0000070-1510915933:373114..373687Clytia hemisphaericaexon
TCONS_00006822-exon-sc0000070-1575043694:373114..373687TCONS_00006822-exon-sc0000070-1575043694:373114..373687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:373114..373687 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247136	0.494638	1.21819	1.59934	0	0	0.295543	0.428536	0.291126	0.719227	0.83492	0.463911	0.452016	0.742182	0.508951	0.289881	0.348219	0.836505	1.11389	1.81475	2.72495	2.03102	2.31457	1.62317	0	0.633207	2.46027	2.11697	0.161602	0.321534
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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