|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006839 ID=TCONS_00006839|Name=TCONS_00006839|organism=Clytia hemisphaerica|type=transcript|length=1537bp
AGACTGTAAAATCTCTACAAAAGCCTCCAAAAGTAAATTCTACTAAATCA
ACATGGCCTTTCGAATGATCAGGTATTCCGCAAAATATTCTTTGAGCAAC
AAAAGTGCTTCATTGAACCATTTAGCGATTCGTTTACTTTCGTCTACGTA
TCAACGTCAAATATTAACGGACGAGCAAGTGGAAGCGTATCAACGTGACA
GTTACGTCGTTCTCAGAGATCTTCTTACGCCGGACGAAAAGAAATTATTT
ACGCGTACCATTGACGAGATCGAAAAATGGCCGGTTAGCGATGACAAATG
GTTTACGTATTACGAAACAAACAGTGGCGTAAGACGCCTGTCCCGCCTCG
AAGCTTTTTACGAACATCATGTCGTAACGAAAAAGNAAACGTTACAAGAA
GGAAACAGTAAAATCTCTACAAAAGCCTCCAAAAGTAAATTCTACTAAAC
CAACATGGCCTTTCGAATGATCAGGTATTCCGCAAAATATTCTTTGAGCG
ACAAAAGTGCTTCATTGAACCATTTAGCGATTCGTTTACTTTCGTCTACG
TATCAACGTCATATATTAACGGACGAGCAAGTGGAAGCGTATCAACGTGA
CAGTTACGTCATTTTACGCGATCTTCTTACGCCGGAcgagaaaaaattat
ttacgCGTACCATTGACGAGATCGAAAAATGGCCCGTTAGCGATGACAAA
TGGTTTACGTATTACGAAACAAACAGTGGCGTAAGACGCCTGTCCCGCCT
CGAAGCTTTTTACGAACACCATGTCGTAACGAAGAAAATGGTGGAAGGAA
AGTTAGGCCAAGCTGCTTCAGATTTGCTTGGGGAAGACGCTGTAgttttt
aaagataaaatcaaCTTCAAATATCCTGGAGGCATTGGCTACGATCCACA
CCAGGATGGAGTTAGTTATGTAGATTTTGGACCACAATTCTATATGTCTG
CTTTGGTGCCCGCTGACCCAATGACTCTTGAAAATGGATGTTTGAAGATT
GTCCCTGGGAAATGGGGTAGCTCACCATTTTTAGCTCAAGACGAACGGTG
TGACATTAAGGAAGAGATAGCGAGAGATTTTAAATGGGATCCAGTGATTT
GTGATGCTGGAACTGTAGTCATGTTTAATTCTCATGTCCCTCATAAATCT
GATGTCAATCAAACGAACCGATCACGACGCGCCCTTTACATCACGTGGAA
TGGTATTTCATGGGGTGAGAAACGTGATGAATTTTATTCCGTGAGACGAC
GGTTGCTTCCTTCAGATCATTTGAGAGATCCTAATAAAGACTATTCGGAA
GGAATTTCACTCTATAGGGAACATATGATCGAAATGGGCAATGGTAGGAT
GCCGAAAGCGAATCGTGGAGATTATTGAAACACCTTCCATTACTGTTTAC
TTAGTTATTGATTTTATCACTAGAAAATTAGGAAATATCATATGATATAT
AAtgcttgttcaaatttacagctaTTCAAAATTTAGAATAGTTGAACGGT
AAATACATTTTTGTGTGATACGATGATTTGACGTTTG Run BLAST on NCBI protein sequence of TCONS_00006839-protein >TCONS_00006839-protein ID=TCONS_00006839-protein|Name=TCONS_00006839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MAFRMIRYSAKYSLSDKSASLNHLAIRLLSSTYQRHILTDEQVEAYQRDS
YVILRDLLTPDEKKLFTRTIDEIEKWPVSDDKWFTYYETNSGVRRLSRLE
AFYEHHVVTKKMVEGKLGQAASDLLGEDAVVFKDKINFKYPGGIGYDPHQ
DGVSYVDFGPQFYMSALVPADPMTLENGCLKIVPGKWGSSPFLAQDERCD
IKEEIARDFKWDPVICDAGTVVMFNSHVPHKSDVNQTNRSRRALYITWNG
ISWGEKRDEFYSVRRRLLPSDHLRDPNKDYSEGISLYREHMIEMGNGRMP
KANRGDY Run BLAST on NCBI transcript from alignment at sc0000070:544249..545785 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006839 ID=TCONS_00006839|Name=TCONS_00006839|organism=Clytia hemisphaerica|type=transcript|length=1537bp|location=Sequence derived from alignment at sc0000070:544249..545785 (Clytia hemisphaerica)
CAAACGTCAAATCATCGTATCACACAAAAATGTATTTACCGTTCAACTAT
TCTAAATTTTGAAtagctgtaaatttgaacaagcaTTATATATCATATGA
TATTTCCTAATTTTCTAGTGATAAAATCAATAACTAAGTAAACAGTAATG
GAAGGTGTTTCAATAATCTCCACGATTCGCTTTCGGCATCCTACCATTGC
CCATTTCGATCATATGTTCCCTATAGAGTGAAATTCCTTCCGAATAGTCT
TTATTAGGATCTCTCAAATGATCTGAAGGAAGCAACCGTCGTCTCACGGA
ATAAAATTCATCACGTTTCTCACCCCATGAAATACCATTCCACGTGATGT
AAAGGGCGCGTCGTGATCGGTTCGTTTGATTGACATCAGATTTATGAGGG
ACATGAGAATTAAACATGACTACAGTTCCAGCATCACAAATCACTGGATC
CCATTTAAAATCTCTCGCTATCTCTTCCTTAATGTCACACCGTTCGTCTT
GAGCTAAAAATGGTGAGCTACCCCATTTCCCAGGGACAATCTTCAAACAT
CCATTTTCAAGAGTCATTGGGTCAGCGGGCACCAAAGCAGACATATAGAA
TTGTGGTCCAAAATCTACATAACTAACTCCATCCTGGTGTGGATCGTAGC
CAATGCCTCCAGGATATTTGAAGttgattttatctttaaaaacTACAGCG
TCTTCCCCAAGCAAATCTGAAGCAGCTTGGCCTAACTTTCCTTCCACCAT
TTTCTTCGTTACGACATGGTGTTCGTAAAAAGCTTCGAGGCGGGACAGGC
GTCTTACGCCACTGTTTGTTTCGTAATACGTAAACCATTTGTCATCGCTA
ACGGGCCATTTTTCGATCTCGTCAATGGTACGcgtaaataattttttctc
gTCCGGCGTAAGAAGATCGCGTAAAATGACGTAACTGTCACGTTGATACG
CTTCCACTTGCTCGTCCGTTAATATATGACGTTGATACGTAGACGAAAGT
AAACGAATCGCTAAATGGTTCAATGAAGCACTTTTGTCGCTCAAAGAATA
TTTTGCGGAATACCTGATCATTCGAAAGGCCATGTTGGTTTAGTAGAATT
TACTTTTGGAGGCTTTTGTAGAGATTTTACTGTTTCCTTCTTGTAACGTT
TNCTTTTTCGTTACGACATGATGTTCGTAAAAAGCTTCGAGGCGGGACAG
GCGTCTTACGCCACTGTTTGTTTCGTAATACGTAAACCATTTGTCATCGC
TAACCGGCCATTTTTCGATCTCGTCAATGGTACGCGTAAATAATTTCTTT
TCGTCCGGCGTAAGAAGATCTCTGAGAACGACGTAACTGTCACGTTGATA
CGCTTCCACTTGCTCGTCCGTTAATATTTGACGTTGATACGTAGACGAAA
GTAAACGAATCGCTAAATGGTTCAATGAAGCACTTTTGTTGCTCAAAGAA
TATTTTGCGGAATACCTGATCATTCGAAAGGCCATGTTGATTTAGTAGAA
TTTACTTTTGGAGGCTTTTGTAGAGATTTTACAGTCT Coding sequence (CDS) from alignment at sc0000070:544249..545785 >TCONS_00006839 ID=TCONS_00006839|Name=TCONS_00006839|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000070:544249..545785 (Clytia hemisphaerica)
TCAATAATCTCCACGATTCGCTTTCGGCATCCTACCATTGCCCATTTCGA
TCATATGTTCCCTATAGAGTGAAATTCCTTCCGAATAGTCTTTATTAGGA
TCTCTCAAATGATCTGAAGGAAGCAACCGTCGTCTCACGGAATAAAATTC
ATCACGTTTCTCACCCCATGAAATACCATTCCACGTGATGTAAAGGGCGC
GTCGTGATCGGTTCGTTTGATTGACATCAGATTTATGAGGGACATGAGAA
TTAAACATGACTACAGTTCCAGCATCACAAATCACTGGATCCCATTTAAA
ATCTCTCGCTATCTCTTCCTTAATGTCACACCGTTCGTCTTGAGCTAAAA
ATGGTGAGCTACCCCATTTCCCAGGGACAATCTTCAAACATCCATTTTCA
AGAGTCATTGGGTCAGCGGGCACCAAAGCAGACATATAGAATTGTGGTCC
AAAATCTACATAACTAACTCCATCCTGGTGTGGATCGTAGCCAATGCCTC
CAGGATATTTGAAGttgattttatctttaaaaacTACAGCGTCTTCCCCA
AGCAAATCTGAAGCAGCTTGGCCTAACTTTCCTTCCACCATTTTCTTCGT
TACGACATGGTGTTCGTAAAAAGCTTCGAGGCGGGACAGGCGTCTTACGC
CACTGTTTGTTTCGTAATACGTAAACCATTTGTCATCGCTAACGGGCCAT
TTTTCGATCTCGTCAATGGTACGcgtaaataattttttctcgTCCGGCGT
AAGAAGATCGCGTAAAATGACGTAACTGTCACGTTGATACGCTTCCACTT
GCTCGTCCGTTAATATATGACGTTGATACGTAGACGAAAGTAAACGAATC
GCTAAATGGTTCAATGAAGCACTTTTGTCGCTCAAAGAATATTTTGCGGA
ATACCTGATCATTCGAAAGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006839-exon-sc0000070-1491911889:544249..545785 | TCONS_00006839-exon-sc0000070-1491911889:544249..545785 | Clytia hemisphaerica | exon |
| TCONS_00006839-exon-sc0000070-1510915933:544249..545785 | TCONS_00006839-exon-sc0000070-1510915933:544249..545785 | Clytia hemisphaerica | exon |
| TCONS_00006839-exon-sc0000070-1575043694:544249..545785 | TCONS_00006839-exon-sc0000070-1575043694:544249..545785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:544249..545785 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008775 | Phytyl_CoA_dOase |
Blast
The following BLAST results are available for this feature:
|
