TCONS_00006842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006842
Unique NameTCONS_00006842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006842 ID=TCONS_00006842|Name=TCONS_00006842|organism=Clytia hemisphaerica|type=transcript|length=635bp
NNCTCAAAGATGATCAAATGATGAGCTTCAAAGACTTTAGGacactttta
aacttttgaggACGACCTGGCCTACAGTACCAAAAGACAGATGAGTTAAA
GCGAGTTAAAGAACTAATATGTTGTGAATGTTTATCATTATGGCTGATCA
CTTTTCTACTTAACTTTGGTGTTTGCAAAACTTGCAGATATATGAAACTC
TAAAAAGGCTGATTCCATAAATGGTGGAATGATTAACCCAATCTTATAAT
TCATACTCTTGACATTCAATTAAATTGATTGGAAActtgagaatattttt
ggtattttgaatgACATAGTACATATATACAAGATGTTGATTGACTATTT
TAATATACCTTATATGTGTTAATATCGATATTGAAATGAAGAAATAATAA
TCATGGAAGTAGACACTCAACTAGAGGGTATCGTGATATTTTACGATGGA
CTTGAATGacatacaaacattttttaaactctaTTTTACTAAAACTATAT
CTACGATATAAAACTGTACTTTTGGATACGTAATAAACTTCCCCTCCCCc
gctaataaataaattctcctatctggcttattccaaacccccatttattt
aggtacccaagagtagttAGAGCCTTTTATGGACC
Run BLAST on NCBI

transcript from alignment at sc0000070:560653..561287

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006842 ID=TCONS_00006842|Name=TCONS_00006842|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at sc0000070:560653..561287 (Clytia hemisphaerica)
GGTCCATAAAAGGCTCTaactactcttgggtacctaaataaatgggggtt
tggaataagccagataggagaatttatttattagcgGGGGAGGGGAAGTT
TATTACGTATCCAAAAGTACAGTTTTATATCGTAGATATAGTTTTAGTAA
AAtagagtttaaaaaatgtttgtatgtCATTCAAGTCCATCGTAAAATAT
CACGATACCCTCTAGTTGAGTGTCTACTTCCATGATTATTATTTCTTCAT
TTCAATATCGATATTAACACATATAAGGTATATTAAAATAGTCAATCAAC
ATCTTGTATATATGTACTATGTcattcaaaataccaaaaatattctcaag
TTTCCAATCAATTTAATTGAATGTCAAGAGTATGAATTATAAGATTGGGT
TAATCATTCCACCATTTATGGAATCAGCCTTTTTAGAGTTTCATATATCT
GCAAGTTTTGCAAACACCAAAGTTAAGTAGAAAAGTGATCAGCCATAATG
ATAAACATTCACAACATATTAGTTCTTTAACTCGCTTTAACTCATCTGTC
TTTTGGTACTGTAGGCCAGGTCGTcctcaaaagtttaaaagtgtCCTAAA
GTCTTTGAAGCTCATCATTTGATCATCTTTGAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003841XLOC_003841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006842-exon-sc0000070-1491911889:560653..561287TCONS_00006842-exon-sc0000070-1491911889:560653..561287Clytia hemisphaericaexon
TCONS_00006842-exon-sc0000070-1510915933:560653..561287TCONS_00006842-exon-sc0000070-1510915933:560653..561287Clytia hemisphaericaexon
TCONS_00006842-exon-sc0000070-1575043694:560653..561287TCONS_00006842-exon-sc0000070-1575043694:560653..561287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:560653..561287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.772595	0.407784	0.323378	0.0313646	4.32995	2.9265	2.61971	1.60764	1.08005	2.26701	1.08168	0.65885	2.16854	1.37171	1.05304	1.15857	1.38966	1.80792	4.32723	5.41529	3.62344	1.86053	3.14913	3.31492	0.207224	0.585179	12.0239	10.3181	6.45651	9.97367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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