TCONS_00006869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006869
Unique NameTCONS_00006869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006869 ID=TCONS_00006869|Name=TCONS_00006869|organism=Clytia hemisphaerica|type=transcript|length=304bp
ATTCAAAGTTTGTTGACGTTTTGagtaaagattacgtcattcGAACTGGA
TTGATTATCGTTACGTCATCGTCAATCAATAAAGAAGAAACAAAGCTCGC
AAATTCATCACTCGATACCCACAAGAACGGAACAGTCTCACAGCAAAGCA
CTGCAAGTCATACAAAAGCTACCAACATCTTGATCATAACTGCTTCTTCA
TTTGCGTTGTTCATATTTCTCGGTACCGTGGTTTTTGTATGTTATCGAAG
AAGCGccaaaatgaagaaaagaaatGCAATGGTGACTATCGATGATAAAg
gaac
Run BLAST on NCBI

transcript from alignment at sc0000072:187254..188109+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006869 ID=TCONS_00006869|Name=TCONS_00006869|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at sc0000072:187254..188109+ (Clytia hemisphaerica)
ATTCAAAGTTTGTTGACGTTTTGagtaaagattacgtcattcGAACTGGA
TTGATTATCGTTACGTCATCGTCAATCAATAAAGGTAAGATTACTTTTCC
AGACAAATATATGTTGTAATTTGGtcccaatagaccttttcataaattaa
atCACGAATatcagcctcgttttgaaattattgtcatgTTGATTAACTCC
CAGagcggattttatcaaaactacattatattcataaaaaaatcatcaag
ggacataatcaccatggaaattgtttgaatacgaggcaagtgacgttcgt
gacgtaatttatgaaaaggtctattcttcaTGAAAATGTAGATTTAACAT
CATTATTAGGGAATAAATTGGGTGGGATAAATCTAAAGACAGAGTTAAGC
TCGAGGTGGAGTAAACAGTGACGGAATTGATAACTGCGTTTACAGATTTG
TTCCAAAGGGTTATTTTCCATAGCTGTAAATAGCGGCTTGGGGGCGGCTT
GAAACTTCGCGTGTACGTCCATTTAACGGATGATAACATCGTCTTTCGAA
AGTgttaaaatttatgaattttcctaaaataaagttagcttttttttttc
ggacacactgTAATAATGTAAGTAATACTATTTTAGAAGAAACAAAGCTC
GCAAATTCATCACTCGATACCCACAAGAACGGAACAGTCTCACAGCAAAG
CACTGCAAGTCATACAAAAGCTACCAACATCTTGATCATAACTGCTTCTT
CATTTGCGTTGTTCATATTTCTCGGTACCGTGGTTTTTGTATGTTATCGA
AGAAGCGccaaaatgaagaaaagaaatGCAATGGTGACTATCGATGATAA
Aggaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003852XLOC_003852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006869-exon-sc0000072-1491911889:187254..187337TCONS_00006869-exon-sc0000072-1491911889:187254..187337Clytia hemisphaericaexon
TCONS_00006869-exon-sc0000072-1510915933:187254..187337TCONS_00006869-exon-sc0000072-1510915933:187254..187337Clytia hemisphaericaexon
TCONS_00006869-exon-sc0000072-1575043694:187254..187337TCONS_00006869-exon-sc0000072-1575043694:187254..187337Clytia hemisphaericaexon
TCONS_00006869-exon-sc0000072-1491911889:187890..188109TCONS_00006869-exon-sc0000072-1491911889:187890..188109Clytia hemisphaericaexon
TCONS_00006869-exon-sc0000072-1510915933:187890..188109TCONS_00006869-exon-sc0000072-1510915933:187890..188109Clytia hemisphaericaexon
TCONS_00006869-exon-sc0000072-1575043694:187890..188109TCONS_00006869-exon-sc0000072-1575043694:187890..188109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:187254..188109 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.7844	77.6001	85.3591	76.4133	4.41118	3.0696	0.959411	1.7859	0	0	0	0.242699	0.992603	0	0	0	0	0	0	0	0	0	33.4879	35.3892	0	0.357529	0.697126	4.12251	13.1571	11.4573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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