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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006871 ID=TCONS_00006871|Name=TCONS_00006871|organism=Clytia hemisphaerica|type=transcript|length=1343bpRun BLAST on NCBI protein sequence of TCONS_00006871-protein >TCONS_00006871-protein ID=TCONS_00006871-protein|Name=TCONS_00006871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp MAAFEQLFQSDEEIEKEEEKLSINKAFAKKYQKFKECQELDKLKAKYGDVRun BLAST on NCBI transcript from alignment at sc0000072:197745..231011+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006871 ID=TCONS_00006871|Name=TCONS_00006871|organism=Clytia hemisphaerica|type=transcript|length=33267bp|location=Sequence derived from alignment at sc0000072:197745..231011+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000072:197745..231011+ >TCONS_00006871 ID=TCONS_00006871|Name=TCONS_00006871|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at sc0000072:197745..231011+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006871 vs. Swiss-Prot (Human)
Match: KRI1 (Protein KRI1 homolog OS=Homo sapiens GN=KRI1 PE=1 SV=3) HSP 1 Score: 107.457 bits (267), Expect = 7.346e-25 Identity = 157/378 (41.53%), Postives = 230/378 (60.85%), Query Frame = 2
Query: 302 LSINKAFAKKYQKFKECQELDKLKAKYGDVAIXXXXXXXXXXXXXAEALTPQLEEDFLKTLAMIKSKDPKIYDKASEFYHKSTENGSTTSTNXXXXXXXXXXX---XDYERKRLLEKGSKAYISDSDSDDERAGPSSRYVENKNPSELTYNEEQAEIKKSFKX------XXXXXXXXXXXXXQVRXXXXXXXXXXXXXXXXWIK--KEGRDLDSLGS------FWKSKDLNEDDQFLRDYILNRKF--------------VNEGESLPSYKDIVGDSSGXXXXXXXXXXXXXXXXXXXXXXXXXXPDQEFIKRFPRTIAESVRRTDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMEKLDKLKEITGNDKV 1342
L +N AFA +Y +++E +EL +LK +YGD SSS + D+ PQ E DF KTL+++K KDP+IY K + FY+++ + + + +K+K + KDYERK +LEK K Y+ + +SD E + + R E S +Y EEQ ++K+SF+ ++ E LLQ R KT+QE+ EE DY +W+K KE R+ DSL +W +L+E ++FLRDYILN+++ EG P + V DSS +E E L K+E+FE+K+NFR+EEPD +K +PR+IA SVRR D+ RK+KR+E ERK +EK KK+EELK+LKNLKRKEI+ KL+KL+++TGN+ +
Sbjct: 10 LRVNAAFAARYNRYREREELQRLKDRYGDRDSSSDSSSESDSSDERVEFDPQQERDFYKTLSLLKKKDPRIYQKDATFYNRTASSSDSEEDPEALEKQKKVRPMYLKDYERKVILEKAGK-YVDEENSDGETS--NHRLQET---SSQSYVEEQKQLKESFRAFVEDSEDEDGAGEGGSSLLQKRAKTRQEKAQEEADYIEWLKGQKEIRNPDSLKELTHLKEYWNDPELDEGERFLRDYILNKRYEEEEEEEEDEEEMEEEEGVHGPPVQLAVDDSS----DEGELFLKKQEDFEQKYNFRFEEPDSASVKTYPRSIASSVRRKDERRKEKREETRERKKREKAKKQEELKQLKNLKRKEILAKLEKLRKVTGNEML 377 The following BLAST results are available for this feature:
BLAST of TCONS_00006871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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