TCONS_00006875 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006875
Unique Name	TCONS_00006875
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1629

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000072:262274..267684+
coding sequence from alignment at sc0000072:262274..267684+

transcript sequence

>TCONS_00006875 ID=TCONS_00006875|Name=TCONS_00006875|organism=Clytia hemisphaerica|type=transcript|length=1629bp
gccaaattaaatccacgccaaaattaatccactggATGTTGCCACTAAAA
AAAACCTGTATCTTTTCTTATTAAGTTTAGACCAAAATTAAGCtcactgt
tcttataaataataacaaacttttttctattttaaaaagtgtatatttga
aaattgatcaaaataaatttgaaaaagatgaCGGTATATCAATGTCTAGG
CTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGTGCAGGGAT
TATCTGTTCCTACGACCACCACAACAACAGCTGCTCCTACAACCACCACC
ACAACAACAGCTGCTCCTACGACCACCACAACAACAGCTGCTCCTACAAC
CACCACCACAACAACAGCTGCTCCTACAACAACCACCACAACAACAGCCG
CCCCTCCtacaacaaccacaacaacagCTGCCCCTACAACCaccaccaca
acaacaacaactgcCCCTCCTACAACCACCACAACAACAACAGCCGCCCC
TCCtacaacaaccacaacaacagCTGCTCCTACGaccaccacaacaacaa
caaccacgaCCACAACAACAGCCGTCCCTCCTACGACCACCACAACAACA
GCCGTCCCTCCTACGACCACTACAACAACAGCCTCCCCTCCTACGACCAC
CACAACAACAGCCGTCCCTCATACAaccaccacaacaacaacaggCGTCC
CTCCTACAATCTCTTCATCAGAACTTAACAACACTGTCTCGGTGAGATGT
GATGACGAAAAGATGACCATTTTTATTCCCAAAAGTGAAATCCCGAACCT
AGAAGGCGATATTTCTCAATACAATATTTCATGGAATGATTCTACTTGTG
GACCAAGTGAAAAATCCAATAAAACACATTTGGTCATGGTGGCTGGTTAT
TCCTCTTGTGGCACTAAAGCTGTGGATGATGGGAAAAACGTCGTTTTTCG
AAATAAGgtTTCTATCAGCAAAAATACAACACATATTACTGAAAAACCTC
ATCTCGAGACAGCTAGTAGCTATGTTAGTAGCTATATTGCGGAGTGCCGA
GTTCAGAAGCTAGTTAATGTTTCACAAGAAGATGGATTCAATGTTACAAT
GCCTGATTCGGTGGTTGCAAAAACAAGTTCGACTGACGAATTCACCGTGT
CGATGAATCTCTTCAAATCAGAAGATTTCAACAAAATGTTCAGCTATCCT
GCTGTTATCGATATTACTGACCGATTCAATTTGGAAATCGAACTGGTAAC
TAGTTCCAGCCTCTTTATCATACCTCAAAATTGTCACGCAACGGCTGAAT
CAAATCGAGATAATTCTCTCAAAGAAGACATCGTCATAGACAGATGTCCA
ACACctggtcacgatttccaagaagaAAAACCAGCTGACAACGGCAAGAA
ATTTCGATTCTCATTGAACACGTTCAGATTCAAAAACACGAACGGTATGG
TCTACATTCATTGCACAGCTCACGTATGCATGAAAAACAGCACAGATCAA
AAATGTCAATTCGGTTGTGTCCAAAATCAAAGGAGAAGAAGGAGATCAGA
AGATCAGACAAGACTTTTTGTTGATTTGACCAAAGATTATGACATTCGAA
CTGGATTGATTGTTGTGCTACCAACCAAC

Run BLAST on NCBI

protein sequence of TCONS_00006875-protein

>TCONS_00006875-protein ID=TCONS_00006875-protein|Name=TCONS_00006875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
MTVYQCLGLFMLLCQLSQFTAVQGLSVPTTTTTTAAPTTTTTTTAAPTTT
TTTAAPTTTTTTTAAPTTTTTTTAAPPTTTTTTAAPTTTTTTTTTAPPTT
TTTTTAAPPTTTTTTAAPTTTTTTTTTTTTTAVPPTTTTTTAVPPTTTTT
TASPPTTTTTTAVPHTTTTTTTGVPPTISSSELNNTVSVRCDDEKMTIFI
PKSEIPNLEGDISQYNISWNDSTCGPSEKSNKTHLVMVAGYSSCGTKAVD
DGKNVVFRNKVSISKNTTHITEKPHLETASSYVSSYIAECRVQKLVNVSQ
EDGFNVTMPDSVVAKTSSTDEFTVSMNLFKSEDFNKMFSYPAVIDITDRF
NLEIELVTSSSLFIIPQNCHATAESNRDNSLKEDIVIDRCPTPGHDFQEE
KPADNGKKFRFSLNTFRFKNTNGMVYIHCTAHVCMKNSTDQKCQFGCVQN
QRRRRRSEDQTRLFVDLTKDYDIRTGLIVVLPTN

Run BLAST on NCBI

transcript from alignment at sc0000072:262274..267684+

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006875 ID=TCONS_00006875|Name=TCONS_00006875|organism=Clytia hemisphaerica|type=transcript|length=5411bp|location=Sequence derived from alignment at sc0000072:262274..267684+ (Clytia hemisphaerica)
gccaaattaaatccacgccaaaattaatccactggATGTTGCCACTAAAA
AAAACCTGTATCTTTTCTTATTAAGTTTAGACCAAAATTAAGCtcactgt
tcttataaataataacaaacttttttctattttaaaaagtgtatatttga
aaattgatcaaaataaatttgaaaaagatgaCGGTATATCAATGTCTAGG
CTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGTGCAGGGAT
TATGTAAGTAACTTTTTCTAcatattttatgttttcttataaacatTTAA
TTTATATAATATAAGCATTATgtatatctaggctcagatatggcaaaAAT
ATAAATGCGTAGTTAACCCAGGGGAGAGGGGGTACTTGTGactaaaacaa
caaaaatgacaaatttttacTCTAAAAGGtacaattttggattttttgca
TGNATAAATCTGAAAAAGATGACGGTATATCAATGTCTAGGCTTATTTAT
GCTCCTTTGTCAACTCTTCCAGTTTACAGCTGCGCAGGAATTATGTAAGT
AACTTTTTCTACATTTATATAAGCATTATATCTAGGTTcagatatggcaa
aaatttgaaTGCGTAGTTAACCCAGGGGCGGGGGTACTTGTGACTAAAAC
ACTCTCAAAGGGTCTCGAAAATGACAATTAAATCAAAAGgtacaattttt
gattttttgcatgctCGAACGTGCATCTCACTTCGCAAACCTAGTACACC
CCCCCGCGATATTGAACTAATTAATGAAAATGTTATGCTGGTGGAGGTAT
TGGCCGGCCTGGACTTAAGAGCCTGTAGTAGATGGATACAGTATTTTTAT
TGCTGCACGAACAATAAATAGACACAGGTAGTATGTTCTTATAATTTGAA
ATTCTAATTCTTTTCAGCTGTTCCTACGACCACCACAACAACAGCTGCTC
CTACAACCACCACCACAACAACAGCTGCTCCTACGACCACCACAACAACA
GCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTACAACAACCAC
CACAACAACAGCCGCCCCTCCtacaacaaccacaacaacagCTGCCCCTA
CAACCaccaccacaacaacaacaactgcCCCTCCTACAACCACCACAACA
ACATCCACCCCTCCTACAACAACCACCACAACAACAGCCGCCCCTCCtac
aacaaccacaacaacagCTGCTCCTACGaccaccacaacaacaacaacca
cgaCCACAACAACAGCCGTCCCTCCTACGACCACCACAACAACAGCCGTC
CCTCCTACGACCACTACAACAACAGCCTCCCCTCCTACGACCACCACAAC
AACAGCCGTCCCTCATACAaccaccacaacaacaacaggCGTCCCTCCTA
CAATCTCTTCATCAGGTACTTTTGATTATCTGATCGTTAAGGGGCATTGT
TATTTCGCGATACTAGGACTGAAATGAATATCTCAAACACCTTTATAAAC
CCTACACTAAGCTCCGCCTATGATCGAAGTGATATCATTGAAGAAGAAAC
TATTGAAGCGTTAAAAGTTTGCCTAACGTCCAACGGGtctacagtgcact
ttttcaaaaaatctttatccagctggcacacaacgttgtttcaatgttca
tctaCTTTCGGGTATCTAATAACCGTCCCCccctaattaatttttcgaaa
attttccacccaggacatttttattccaaccccctgcttattaatttttg
ggaaattgtttttgaaaattccctcttttgtcctaattcagctgtattag
cctccttttcaaaatttttccacccaggacatttttgttccaaccccccc
ccccccccacctgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAaccttattaagtt
ttgagattttttccacctCCCCCCCTCCGCTAATTCCAATCCCcttggct
attaggtacccgagagtaatgtTTACAACGTCCATGTAACGTTAAAAacg
aacgttaaaacaacgtcacGTGCCAGTTAGATATGGAGCGTTTAATGAGT
GAACGAGGCTCTCGTGCCTGAAACGAGGGGGTCtcagtctgaatcgcaga
ccttatagatatacttccttaGTTTGATTCGCAAACCTCGCTAGAGGATG
AGAAGAAGCCTAATACTTCCTATATAAAAAACTTTctctataagaaactc
ttttcaCTATAGGATGAACAGAAGTCTAGGACCCAGTTCAAATCCTAGCT
CCTTCAAATGTTCCGCTAAATTGATAAACAAGATACCACGTATTATATGA
TACCTGTGATTGAAAAAGGGGTTGTATCTATTTAGAACTTAACAACACTG
TCTCGGTGAGATGTGATGACGAAAAGATGACCATTTTTATTCCCAAAAGT
GAAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATATTTCATGGAA
TGATTCTACTTGTGGACCAAGTGAAAAATCCAATAAAACACATTTGGTCA
TGGTGGCTGGTTATTCCTCTTGTGGCACTAAAGCTGTGGATGATGGGAAA
AACGTCGTTTTTCGAAATAAGGTAACTAAGCATATAATCATTATTGTTTC
TCGAATAATCTCTAAGACGAACACCGGTTGTAAAAACTTTATTAAAAACA
ATATTAGGTTCTCCTAAATATTTTAAGAGGAAATGCATTAAGAGAACTAA
TTTTATCGGGgagcaaaaattgtaaaaaatttagatttgcCGAGAACTTA
TTATGTCGAGcaataattttaatttcaaaattgtcgTAATTTTTCAAAGC
ATCCCCCTAATTTTTATATTAAACGTTCATTATAAAGTTAGAAGAAAGAT
CTTatgttgaaaataaattgccaaaattaTTTGTCAACGAATTAATTCTT
CTTCGTAATTTTTGCTCCTATCGCCAAAATTAGAtccctaaatattttca
atttggaAAAAGCAGttttgggctcttccagaaaatgccCATACAAGGca
ggtggaggatatagtgtccgcaGGGGAGGGGGTAGTGAGAAAAGTACAAC
ATTTGCCTTATCTGGGGTAaactaatgcttgtccgggggggggggggggg
cgggccctgctgtccgggggggggggggggggggaaaaagggaaaaattt
gCCTTATTGGGGGTAAAtaaacccccgggggggggggggggggggaaaaa
gggaaaaatttgCCTTATTGGGGGTAAAtaaacccccggggggggggggg
ggggggctagacctgctgtccggggggagagtcaaaagtcacaatgtccg
ggggtaaatttccaaaaaatgtcatatcCTCCGCCCCCTCccgtattcaa
tttttttctgcaaaagccCTTAGCGGAATTGGACAAAGATTCTTAATACA
ATTTGTTTCCAAACAAGcatttttactttatataaaaatttgtccgaTTT
TTTTGGACACACGGtatgttcgaattagagaaactTGAACGACtttaaac
aataaattaaataataaattttccaaaattttttcttttaggtTTCTATC
AGCAAAAATACAACACATATTACTGAAAAACCTCATCTCGAGACAGCTAG
TAGCTATGTTAGTAGCTATATTGCGGAGTGCCGAGTTCAGAAGCTAGTTA
ATGTTTCACAAGAAGATGGATTCAATGTTACAATGCCTGATTCGGTGGTT
GCAAAAACAAGTAAGAAGACTGACTTATTGAcctttactcgacgtttttt
cgtgactttttttacatgaatctgccAATAAGAACGTGTATTCCCGTCTG
AGAGTTCAAAATCTAGTGAACCTGTCTCAAAAGGGTTcagaaatccaatg
attgtattgACCTCTagtaattaaaatttttaaatccaatttaataaaat
ataaaGATCCCTCGTGTAAAAGTTACCAAAAACACAAAGATAGGGGTTAC
TCGGACAGGAAATTATATACACGAGACGCATTCCCTGCGTATCGCCTATC
AAATGCATGTAGCCTACTAACTCCTCTCTGGCACCTAATAAGTCCAGCAG
GGATGTAAAATTTCGGGATATCTTTCAGGTTCGACTGACGAATTCACCGT
CTCGATGAATCTCTTNTGTAAAATTTCGGGATATCTTTCAGGTTCGACTG
ACGAATTCACCGTGTCGATGAATCTCTTCAAATCAGAAGATTTCAACAAA
ATGTTCAGCTATCCTGCTGTTATCGATATTACTGACCGATTCAATTTGGA
AATCGAACTGGTAACTAGTTCCAGCCTCTTTATCATACCTCAAAATTGTC
ACGCAACGGCTGAATCAAATCGAGATAATTCTCTCAAAGAAGACATCGTC
ATAGACAGGTATTTAATGAAAAcagtaaaggcttggggacacgagaattt
ttttcgcgttggtgcaatgcaaatgctctatcccaccaacctgaaacgct
ttctcgcgTCTTCAcctcatttttctttctaccaataaaagtgaaaccTG
ACTTTTCTTCTTCCTGACTTTACGctgacaaaatcagcgtgtcttctggg
tatttccctcactttttgtcccgtTAAACGGGATCCAGGGCCTATTCACC
GCGATTTCCATGGACAAAAAGGGGTATGTAAGGAGTGGAGATTACGATCG
GGAactctttgtttcagctaatgaCCCCTTAGACCATGTTCATACATTAA
GGTTTCTTATCACTTGAGTATAGATTTGGTTACGACAAGAAATGGTCATG
TTCGTTTCGAGAAATGTTTCGGTGCAGTTTCGTTCCGATGAATAAAGTGG
AGTGTAACTGATTCGatacgtttttctttttagcgtctttttttttgaca
tttcaaatttttggtgtGCACGCAGGCTTTTAGAACGTTTCATTTCGAAA
CAATGTGGAACATCAACGTCTGAACATTACAATGTCTTAGACGATTTAGC
CACCACTAATATCAACTTCTCGATCACATACAGCATAATTGATTTAAAAC
TTATCAACTATTCTCAATTTCTTAGATGTCCAACACctggtcacgatttc
caagaagaAAAACCAGCTGACAACGGCAAGAAATTTCGATTCTCATTGAA
CACGTTCAGATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACAG
CTCACGTATGCATGAAAAACAGCACAGATCAAAAATGTCAATTCGGTTGT
GTCCAAAATCAAAGGAGAAGAAGGAGATCAGAAGATCAGACAAGACTTTT
TGTTGATTTGACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTGC
TACCAACCAAC

Coding sequence (CDS) from alignment at sc0000072:262274..267684+

>TCONS_00006875 ID=TCONS_00006875|Name=TCONS_00006875|organism=Clytia hemisphaerica|type=CDS|length=1452bp|location=Sequence derived from alignment at sc0000072:262274..267684+ (Clytia hemisphaerica)
atgaCGGTATATCAATGTCTAGGCTTATTTATGCTCCTTTGTCAACTCTC
CCAGTTTACAGCTGTGCAGGGATTATCTGTTCCTACGACCACCACAACAA
CAGCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTACGACCACC
ACAACAACAGCTGCTCCTACAACCACCACCACAACAACAGCTGCTCCTAC
AACAACCACCACAACAACAGCCGCCCCTCCtacaacaaccacaacaacag
CTGCCCCTACAACCaccaccacaacaacaacaactgcCCCTCCTACAACC
ACCACAACAACAACAGCCGCCCCTCCtacaacaaccacaacaacagCTGC
TCCTACGaccaccacaacaacaacaaccacgaCCACAACAACAGCCGTCC
CTCCTACGACCACCACAACAACAGCCGTCCCTCCTACGACCACTACAACA
ACAGCCTCCCCTCCTACGACCACCACAACAACAGCCGTCCCTCATACAac
caccacaacaacaacaggCGTCCCTCCTACAATCTCTTCATCAGAACTTA
ACAACACTGTCTCGGTGAGATGTGATGACGAAAAGATGACCATTTTTATT
CCCAAAAGTGAAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATAT
TTCATGGAATGATTCTACTTGTGGACCAAGTGAAAAATCCAATAAAACAC
ATTTGGTCATGGTGGCTGGTTATTCCTCTTGTGGCACTAAAGCTGTGGAT
GATGGGAAAAACGTCGTTTTTCGAAATAAGgtTTCTATCAGCAAAAATAC
AACACATATTACTGAAAAACCTCATCTCGAGACAGCTAGTAGCTATGTTA
GTAGCTATATTGCGGAGTGCCGAGTTCAGAAGCTAGTTAATGTTTCACAA
GAAGATGGATTCAATGTTACAATGCCTGATTCGGTGGTTGCAAAAACAAG
TTCGACTGACGAATTCACCGTGTCGATGAATCTCTTCAAATCAGAAGATT
TCAACAAAATGTTCAGCTATCCTGCTGTTATCGATATTACTGACCGATTC
AATTTGGAAATCGAACTGGTAACTAGTTCCAGCCTCTTTATCATACCTCA
AAATTGTCACGCAACGGCTGAATCAAATCGAGATAATTCTCTCAAAGAAG
ACATCGTCATAGACAGATGTCCAACACctggtcacgatttccaagaagaA
AAACCAGCTGACAACGGCAAGAAATTTCGATTCTCATTGAACACGTTCAG
ATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACAGCTCACGTAT
GCATGAAAAACAGCACAGATCAAAAATGTCAATTCGGTTGTGTCCAAAAT
CAAAGGAGAAGAAGGAGATCAGAAGATCAGACAAGACTTTTTGTTGATTT
GACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTGCTACCAACCA
AC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003856	XLOC_003856	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006875-protein	TCONS_00006875-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000072	supercontig	sc0000072:262274..267684 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0021134	0.0767187	0.313189	7.26491e-08	5.35151	8.97528	1.21674	2.3706	0	0.0529901	0	0	8.80671	21.8398	0	0	15.4582	15.2598	1.08767	0.160899	2.32377e-08	0	13.9554	9.32157	0	0.0223369

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001507	ZP_dom

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00006875 vs. Swiss-Prot (Human)

BLAST of TCONS_00006875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00006875 (transcript) - C. hemisphaerica