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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006884 ID=TCONS_00006884|Name=TCONS_00006884|organism=Clytia hemisphaerica|type=transcript|length=2330bpRun BLAST on NCBI protein sequence of TCONS_00006884-protein >TCONS_00006884-protein ID=TCONS_00006884-protein|Name=TCONS_00006884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=677bp MDEMELDVDQIGDFENERARNIMQNYEFMKACGLPVKNPALNKKKVEKIERun BLAST on NCBI transcript from alignment at sc0000072:363429..371056+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006884 ID=TCONS_00006884|Name=TCONS_00006884|organism=Clytia hemisphaerica|type=transcript|length=7628bp|location=Sequence derived from alignment at sc0000072:363429..371056+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000072:363429..371056+ >TCONS_00006884 ID=TCONS_00006884|Name=TCONS_00006884|organism=Clytia hemisphaerica|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000072:363429..371056+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006884 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 306.99 bits (785), Expect = 6.372e-92 Identity = 144/248 (58.06%), Postives = 184/248 (74.19%), Query Frame = 3
Query: 1371 EKPYKCDNCEKRFNQSGALQRHLRTHTGDKPYRCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGERFAHSNSLKNHLHFHTGDGRPHKCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGKGFNQTGNLQTHLRTHTGEKPYKCDVCGKFFSVSSSLKKHK 2114
EKPY+CD+C K F++S L H R HTG+KPY+C++CGKGF Q LQ H R HTG+KPY+C CG+ FS SS+L TH R HT EKPYKCD CG+ F+ S +L +H HTG+ +P+KC+ CGKGF+ + + Q H R HTG+KP+RC++CG+GFS SS+ Q H R HTGEKPYKC++CG+ F+ S +L H R HTGEKPYKC+ CGKGF+Q NLQ H HTGEKP+KCD C K FS +S L+ H+
Sbjct: 372 EKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGE-KPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQ 618 HSP 2 Score: 306.99 bits (785), Expect = 8.067e-92 Identity = 142/250 (56.80%), Postives = 180/250 (72.00%), Query Frame = 3
Query: 1365 SKEKPYKCDNCEKRFNQSGALQRHLRTHTGDKPYRCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGERFAHSNSLKNHLHFHTGDGRPHKCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGKGFNQTGNLQTHLRTHTGEKPYKCDVCGKFFSVSSSLKKHK 2114
++EKPYKCD C K F+ S L H R HTG+KPY+C+ CGKGF+ + + Q H R HTG+KP+RC++CG+GFS SS+ Q H R HTGEKPYKC++CG+RF S +L NH HTG+ +P+KC+ CGKGF+Q+ LQ H HTG+KP++CD C + FS +SHLQ H R HTGEKPYKCD CG+ FS S+LQ H HTGEKP+KC+ CGK F+ + L H R HTGEKPY C CGK FS +S H+
Sbjct: 454 TEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGE-KPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQ 702 HSP 3 Score: 301.982 bits (772), Expect = 4.517e-90 Identity = 141/248 (56.85%), Postives = 180/248 (72.58%), Query Frame = 3
Query: 1371 EKPYKCDNCEKRFNQSGALQRHLRTHTGDKPYRCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGERFAHSNSLKNHLHFHTGDGRPHKCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGKGFNQTGNLQTHLRTHTGEKPYKCDVCGKFFSVSSSLKKHK 2114
EKPYKC +C KRF+ S L H R HT +KPY+CD CGK F+ S L H R HTG+KPY+C+ CG+GFS++S Q+H R HTGEKP++C++CG+ F+ S+ + H HTG+ +P+KC++CGK FN S L H R HTG+KPY+C+ CG+GFS +S+LQ H HTGEKP+KCD C + FS +SHLQ H R HTGEKPYKCD CGK F+Q NLQ H HTGEKP+KC+ CGK FS S+ L H+
Sbjct: 428 EKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGE-KPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQ 674 HSP 4 Score: 292.738 bits (748), Expect = 1.242e-86 Identity = 137/248 (55.24%), Postives = 176/248 (70.97%), Query Frame = 3
Query: 1371 EKPYKCDNCEKRFNQSGALQRHLRTHTGDKPYRCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGERFAHSNSLKNHLHFHTGDGRPHKCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGKGFNQTGNLQTHLRTHTGEKPYKCDVCGKFFSVSSSLKKHK 2114
EKPYKC+ C K F+ + + Q H R HTG+KP+RC++CGKGF+QS Q H R HTG+KPY+C++CG+ F+ S +L H R HTGEKPYKC+ CG+ F+ +++L+ H HTG+ +P KCD C K F+Q+ LQ H R HTG+KPY+CD CG+ FS S+LQ H HTGEKP+KC+ CG+ FS S+ L H R HTGEKPY C CGKGF+Q + TH R HTGE+PY CDVC K FS S L H+
Sbjct: 484 EKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGE-KPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQ 730 HSP 5 Score: 268.47 bits (685), Expect = 8.162e-78 Identity = 124/225 (55.11%), Postives = 160/225 (71.11%), Query Frame = 3
Query: 1371 EKPYKCDNCEKRFNQSGALQRHLRTHTGDKPYRCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGERFAHSNSLKNHLHFHTGDGRPHKCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGKGFNQTGNLQTHLRTHTG 2045
EKP++C+ C K F+QS Q H R HTG+KPY+C++CGK FN S L H R HTG+KPY+C+ CG+GFS +S+LQ H HTGEKP+KCD C +RF+ ++ L+ H HTG+ +P+KCD CGK F+Q LQ H HTG+KP++C+ CG+ FS S+ L H R HTGEKPY C CG+GFS +SH TH R HTGE+PY CD+C KGF+Q +L H R HTG
Sbjct: 512 EKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGE-KPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 HSP 6 Score: 226.868 bits (577), Expect = 4.980e-63 Identity = 116/223 (52.02%), Postives = 145/223 (65.02%), Query Frame = 3
Query: 1446 HTGDKPYRCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGERFAHSNSLKNHLHFHTGDGRPHKCDICGKGFNQSGALQRHLRTHTGDKPYRCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGRGFSNSSHLQTHLRTHTGEKPYKCDICGKGFNQTGNLQTHLRTHTGEKPYKCDVCGKFFSVSSSLKKHK 2114
HTG K Y+ + C + FN S +L+ H + H G K C + S SS + TG+K Y C CG+ F+ S++L+ H HTG+ +P+ C CGK FNQS L HL HTG+KPYRCD CG+GFS S+ L H R HTGEKPYKC++CG+GF+ SHLQ H R HTGEKPYKC CGK F+ + NL TH R HT EKPYKCD CGK FS+S +L H+
Sbjct: 257 HTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGE-KPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQ 478 The following BLAST results are available for this feature:
BLAST of TCONS_00006884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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