TCONS_00006915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006915
Unique NameTCONS_00006915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length942

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006915 ID=TCONS_00006915|Name=TCONS_00006915|organism=Clytia hemisphaerica|type=transcript|length=942bp
CCAAATTAAGACAATTGTATTATCAAGAAGATGGGTTTGGACACAACAAT
CTGGGAGCTTCTGAAGATCAAGTTAAAGAAGAGAGATGATTCTGTACTTG
ATCAATACAATCGTTTGTTtatggttcgattgttgttgaTCTGTGCAGCG
ATTGGTGGAATCAGTTGGTCCACTGATCATATACATTGCAATGTACCTGG
TTACATACCAGACAGTACGGAATTTGAAGAATACGCACACACTGTCGAAA
CCTCGTGTTGGATTCAAGGTTTATTTATCCACCGTGACTTAACATCTCAT
CAAGATGCCACCGCGTACTATGGAATCACCGAAGATATCGATTTCGATGG
GATAATTCATGGCTCAAACGGCTCAAATGAATTATGTAAAACCAAAAACC
GTATGGGTAAAAAACCAAACGAAGCGTGCAGAAAGAtggaaaagacattt
tttacACAGTATCAatatctaccatttttgttgtgTACATTGGCGCTGCT
TTATTATCTCCCTTATATGCTGCACAAAGTTGCTGCTTACGATATTGTCA
AATTACGTGATGTTACGAAGCATGACCAAAAGACGGACTCGAAAAAAATG
TCacctcaaaacattcgaaaatatttcTTCCGTAACAAGAATAGAATATT
TCCGAAATCACTCATCAAACCCGAATTCCAAACATACGAAAATATTAACT
TGTTAGCAAAAGTTTCAGGAAAAGAACGATATTCTCATTTCAAGCAAAAT
ATGATTCACTATGGACTACTTATTGTGGTCAAGCTTTTATACATTGGAGT
AAATATAATCGCATTGTTTTTCCTTGATTGGATTCTTGGGAATAACTTTG
CAGATTATGGAATTGAAGTTTACAAATGGACAAGATTAAACCATTTTGAA
CAATATGATTATTTAGGACCACGAGAAGATCCGAAACCAAGT
Run BLAST on NCBI

protein sequence of TCONS_00006915-protein

>TCONS_00006915-protein ID=TCONS_00006915-protein|Name=TCONS_00006915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MGLDTTIWELLKIKLKKRDDSVLDQYNRLFMVRLLLICAAIGGISWSTDH
IHCNVPGYIPDSTEFEEYAHTVETSCWIQGLFIHRDLTSHQDATAYYGIT
EDIDFDGIIHGSNGSNELCKTKNRMGKKPNEACRKMEKTFFTQYQYLPFL
LCTLALLYYLPYMLHKVAAYDIVKLRDVTKHDQKTDSKKMSPQNIRKYFF
RNKNRIFPKSLIKPEFQTYENINLLAKVSGKERYSHFKQNMIHYGLLIVV
KLLYIGVNIIALFFLDWILGNNFADYGIEVYKWTRLNHFEQYDYLGPRED
PKPS
Run BLAST on NCBI

transcript from alignment at sc0000072:6304..8344-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006915 ID=TCONS_00006915|Name=TCONS_00006915|organism=Clytia hemisphaerica|type=transcript|length=2041bp|location=Sequence derived from alignment at sc0000072:6304..8344- (Clytia hemisphaerica)
CCAAATTAAGACAATTGTATTATCAAGAAGATGGGTTTGGACACAACAAT
CTGGGAGCTTCTGAAGATCAAGTTAAAGAAGAGAGATGATTCTGTACTTG
ATCAATACAATCGTTTGTTTATGGTTCGATTGTTGTTGATCTGTGCAGCG
ATTGGTGGAATCAGTTGGTCCACTGATCATATACATTGCAATGTACCTGG
TAAGATTGACCGAAATTTTCATCATCCAGTGATAGAGTCCCCCAGTGTAC
TTGCAGCGGTGTCTCGTTAAAGATATCCGAATATGAAATGTAAAAAGTAT
GTTTTGGAGTTGAAATCTTATCTAACTTTAACTATCAATAATATTCTTAC
TGGATTCTTTCTTTCAAGGTTACATACCAGACAGTACGGAATTTGAAGAA
TACGCACACACTGTCGAAACCTCGTGTTGGATTCAAGGTATTTGTTTCGT
CAATTAATTAATAAAAAAAATATTTTTTTCCCACACTGGGGGTGTACCTG
GACAAATGAAGGGAACGAGCATGTTCCACCCTTAAGGGCGTCATTTTAGA
TGATAGATCTTTTATCTGAGTTTTTGATTTTTCTAAAAAAGTGATGCATT
GCGGGATTGTTTCTGGTTGATTACAATTAAGAATTCCCTCGAGGAATTCC
TAAGAGATTTCTATTGTAATACACTCGAATCAATCCTTTTCTGACAATGG
GCCATTCCATACATGGGCGTGGACGAACATTTCCAGGGGGTAGCCTGAGA
AGAGTTTCCATGGGAGTCTAAAAGAGTGTTTTTTTCATTTTCCTGGGGGT
AAAAAGTTATTCTAAAATTTCCAGAAGGTAAAAGACAGGTTTTAGTTCGT
CCACCGTCACTTTAAAGTATAAAAATAAATTTTTCCGAGGGTTTTTTACA
AATTTTGCCACTTTCCAGGGGTTATCCTCACATTTCACATTTCATTTGTC
CACCCCCACTTGTATGATTTTTTTATGGAAGCCCAATATGGATTTCATTT
CCTTTTCAGGTTTATTTATCCACCGTGACTTAACATCTCATCAAGATGCC
ACCGCGTACTATGGAATCACCGAAGATATCGATTTCGATGGGATAATTCA
TGGCTCAAACGGCTCAAATGAATTATGTAAAACCAAAAACCGTATGGGTA
AAAAACCAAACGAAGCGTGCAGAAAGATGGAAAAGACATTTTTTACACAG
GTATTTTACGCTAATTTCTGGGCACAAAATTTTGTTATTACTTTGAGCTC
ACTATCAGTTCATCTGTATAAGTCATTACAAAAGTCTCGATATTCCATAT
TTCCTCTTATAAAAATTGCTGGGTTGATGGGCTGTTCTCATTGCCCAGAA
AATGTCCGTAATGAGAAAAATACCCTGAGTTCTCATTCCCATAAGAAATT
ATACTGAATTATATTGATCTCCACTGGAAAAGCCACTATAATTTTAAGAA
TCCTCATTAAATTTGACATTCCAACTTTTCAAAGAGTCTTACGTCTTACC
GGGCCACAGAGACAGGAATGTTAGACCCCTAAGATCAAATCATTTTTTAT
CTCCTTAGTATCAATATCTACCATTTTTGTTGTGTACATTGGCGCTGCTT
TATTATCTCCCTTATATGCTGCACAAAGTTGCTGCTTACGATATTGTCAA
ATTACGTGATGTTACGAAGCATGACCAAAAGACGGACTCGAAAAAAATGT
CACCTCAAAACATTCGAAAATATTTCTTCCGTAACAAGAATAGAATATTT
CCGAAATCACTCATCAAACCCGAATTCCAAACATACGAAAATATTAACTT
GTTAGCAAAAGTTTCAGGAAAAGAACGATATTCTCATTTCAAGCAAAATA
TGATTCACTATGGACTACTTATTGTGGTCAAGCTTTTATACATTGGAGTA
AATATAATCGCATTGTTTTTCCTTGATTGGATTCTTGGGAATAACTTTGC
AGATTATGGAATTGAAGTTTACAAATGGACAAGATTAAACCATTTTGAAC
AATATGATTATTTAGGACCACGAGAAGATCCGAAACCAAGT

Coding sequence (CDS) from alignment at sc0000072:6304..8344-

>TCONS_00006915 ID=TCONS_00006915|Name=TCONS_00006915|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0000072:6304..8344- (Clytia hemisphaerica)
ATGGGTTTGGACACAACAATCTGGGAGCTTCTGAAGATCAAGTTAAAGAA
GAGAGATGATTCTGTACTTGATCAATACAATCGTTTGTTTATGGTTCGAT
TGTTGTTGATCTGTGCAGCGATTGGTGGAATCAGTTGGTCCACTGATCAT
ATACATTGCAATGTACCTGGTTACATACCAGACAGTACGGAATTTGAAGA
ATACGCACACACTGTCGAAACCTCGTGTTGGATTCAAGGTTTATTTATCC
ACCGTGACTTAACATCTCATCAAGATGCCACCGCGTACTATGGAATCACC
GAAGATATCGATTTCGATGGGATAATTCATGGCTCAAACGGCTCAAATGA
ATTATGTAAAACCAAAAACCGTATGGGTAAAAAACCAAACGAAGCGTGCA
GAAAGATGGAAAAGACATTTTTTACACAGTATCAATATCTACCATTTTTG
TTGTGTACATTGGCGCTGCTTTATTATCTCCCTTATATGCTGCACAAAGT
TGCTGCTTACGATATTGTCAAATTACGTGATGTTACGAAGCATGACCAAA
AGACGGACTCGAAAAAAATGTCACCTCAAAACATTCGAAAATATTTCTTC
CGTAACAAGAATAGAATATTTCCGAAATCACTCATCAAACCCGAATTCCA
AACATACGAAAATATTAACTTGTTAGCAAAAGTTTCAGGAAAAGAACGAT
ATTCTCATTTCAAGCAAAATATGATTCACTATGGACTACTTATTGTGGTC
AAGCTTTTATACATTGGAGTAAATATAATCGCATTGTTTTTCCTTGATTG
GATTCTTGGGAATAACTTTGCAGATTATGGAATTGAAGTTTACAAATGGA
CAAGATTAAACCATTTTGAACAATATGATTATTTAGGACCACGAGAAGAT
CCGAAACCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003868XLOC_003868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006915-exon-sc0000072-1575043694:8146..8344TCONS_00006915-exon-sc0000072-1575043694:8146..8344Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1575043694:7908..7976TCONS_00006915-exon-sc0000072-1575043694:7908..7976Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1575043694:7145..7335TCONS_00006915-exon-sc0000072-1575043694:7145..7335Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1575043694:6304..6786TCONS_00006915-exon-sc0000072-1575043694:6304..6786Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1510915933:8146..8344TCONS_00006915-exon-sc0000072-1510915933:8146..8344Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1510915933:7908..7976TCONS_00006915-exon-sc0000072-1510915933:7908..7976Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1510915933:7145..7335TCONS_00006915-exon-sc0000072-1510915933:7145..7335Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1510915933:6304..6786TCONS_00006915-exon-sc0000072-1510915933:6304..6786Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1491911889:8146..8344TCONS_00006915-exon-sc0000072-1491911889:8146..8344Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1491911889:7908..7976TCONS_00006915-exon-sc0000072-1491911889:7908..7976Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1491911889:7145..7335TCONS_00006915-exon-sc0000072-1491911889:7145..7335Clytia hemisphaericaexon
TCONS_00006915-exon-sc0000072-1491911889:6304..6786TCONS_00006915-exon-sc0000072-1491911889:6304..6786Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006915-proteinTCONS_00006915-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:6304..8344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0484007	0.0699205	0.0631316	0	0.220429	0.387921	0.213447	0.540949	0.817626	6.20787	0	0.207233	3.09336	2.56282	1.11693	1.83446	0.219517	0.235654	7.61217	9.5486	0.177036	0.691467	0.864265	0.880887	0.996036	1.43724	0.974089	0.648111	0	0.0547332
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: Cellular Component
TermDefinition
GO:0005921gap junction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005921 gap junction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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