TCONS_00006941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006941
Unique NameTCONS_00006941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006941 ID=TCONS_00006941|Name=TCONS_00006941|organism=Clytia hemisphaerica|type=transcript|length=796bp
ggtATCTAGTAATGTTCTCACCTGCTGATATCTTTTACAAGATTGTCAAC
ATCAACGCTGTAAAGGCCATTATTTTGGTTTTGAAAGAAGTCCAGCGGGT
gcgaaatattcaaaatggcgtCAATACGGTGGCCGAGACTTACCGAGGTT
CAAGTCTTGATCAAATTTTCTTCGTGGCTGTTCTGATTGGTAGTGTTCGA
GGCAGTGGTGCGAAGTTTTTGATGAGACCATTGGATAGTTTTATTCGTGG
AACAATCGGTGCTGACAACGAGTTCCTCAAACCAACATTCTCTACGAAAC
ATGCTGTTTTATCAAGCATTCTAATCTTACTGCAACGAATGGGTTATTTC
AAAATGGACGAACCACTTCTCATCACCATCTTGTTCGCCATTGCCGCTAC
CGTACAATTAGCTCTTCTCTTCACCGACATTGAGGATCCTTACAAGAAGA
TTGAGGAAGTGTTGGCAGCCATTTTGTTCAAGTTTCCTGACGAAGCGGTC
AAAGAAGTCAAGAAGAAGAAAGACTGAAAACTCTTGATTGGCTTGAAGTT
CGAGTTCTTCGTCATGTCATTTAGTggtacagttgacactctctaattcg
acattccAATTCAcatttcgataatattgaaagtcaccgtcaacaagaaa
ccctcataaacgacgctctactatttggTACACTGCTTATTCGTTGAAAA
TCCTATTCCCctatgaaaatcgaattagagagcgtcaactgtatataaaA
TCTTTTCACCTCACATGGCATGAGTTGACCCGGGcagttcattcac
Run BLAST on NCBI

protein sequence of TCONS_00006941-protein

>TCONS_00006941-protein ID=TCONS_00006941-protein|Name=TCONS_00006941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
YLVMFSPADIFYKIVNINAVKAIILVLKEVQRVRNIQNGVNTVAETYRGS
SLDQIFFVAVLIGSVRGSGAKFLMRPLDSFIRGTIGADNEFLKPTFSTKH
AVLSSILILLQRMGYFKMDEPLLITILFAIAATVQLALLFTDIEDPYKKI
EEVLAAILFKFPDEAVKEVKKKKD
Run BLAST on NCBI

transcript from alignment at sc0000072:427555..430491-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006941 ID=TCONS_00006941|Name=TCONS_00006941|organism=Clytia hemisphaerica|type=transcript|length=2937bp|location=Sequence derived from alignment at sc0000072:427555..430491- (Clytia hemisphaerica)
GGTATCTAGTAATGTTCTCACCTGCTGATATCTTTTACAAGATTGTCAAC
ATCAACGCTGTAAAGGTATTTCTATACGAACTTTTCGAACCATGAACCAT
GACACTAATTGGGCTATTCCAGAAAAAAATTGTACCCCCTATGTTGAGGA
AATCTTTTTTTAAAAAGGTGAGCCTCTCTGGATTTTTTTCCAAATTTTCA
GGACCCCCTTGGATTTTTTCCTCCCATTTCTTTGGACCACCCTGGATTTT
CGACCTCGTTATATACTGACCACCCTGGATTTTGAGTCCGATTTTACTGG
CAATCAGTTCGTCATTCAAGAAACCTGACCACCCTGGATTTTTTATTTTC
CAGACCACCCTGGACGTCACAACTCCTCAACATAGGGGGTACAGACTATT
TCTGGAAAAGCCCATTTTTCGCACTAGCAAAAAGTCTTCAAATGCTAAAA
AATCTTGAAAATATTGCTAGACAAGGCTCTTTTTTAAGTTAAAGCTTTGC
TCATCTCTATCTCGTGGGAGGCAACGGTCCTTCTCAAATAAAGGAGTCTG
TTATACAAATTGATATGACTAGCAGTAACTAGAGCACTGAAAATTTAATC
GATAAAAACATCATGTTATTCTAGGCCATTATTTTGGTTTTGAAAGAAGT
CCAGCGGGTGCGAAATATTCAAAATGGCGTCAATACGGTGGCCGAGACTT
ACCGAGGTTCAAGTCTTGATCAAATTTTCTTCGTGGCTGTTCTGATTGGT
AGTGTTCGAGGTACGTTAATTTCAAGGATATTCTCGTCACTGTACTTAAC
TACTCAATAATAATTTCGATGAGAAAACAAGCACCATGGTAAAACTCACT
CAACTTACTCATCTTTCTCAAAGGTTTTGTCCATTGAAAATACCCTACAG
TTGACGCTCTTTAATTCAATTTTCAAGTGGAATTGAATTTTCATTGAAAA
AGGGAGCATATTGCATAGTAGAGTGTTGTTTATGAGAGTTTCTCGCTGAC
GGTGACTTTCAATATTATTGAATAATAGTAGAAAGTCGAATAAGTGAGGA
ACGACTGGATAAAGAATAAAATCTCGTCGAAAACTGGTAAGTCAATTGAA
TTTTCTCAGGAAGTGATAAAGATTTTTCAAAAAATAAACTCTCCGTTTAT
TTTGTAATCGAGAAGGGCAAATTTTAGCTTAGGTATAAACTTATTTCTTT
TTTTATGATTTTTGTTCATAATTGTTTAGTGAGTGAGTTCGCGGCTCCGA
TAATTATTAAAAATATTTCACATTTTTTCGACCGATCAGGTTATATTATA
GCGAGCAGAACTTCTAAACGTTTTCGCCAACAAAAATCATATGGGAAAAT
GTAACTATGAAAATCCGTGAACAATGAAAAATTGACCTAAGTCAGCGGAA
TTATCATAAAGTCACTTTAAATGAACATACAAATGTATAATTTTCACCAA
GGGTAAAAAATTAAATTTTAAATCCTCTCTAAAAATTTCATTTGTTTTTG
TTCAATAGAAATTTGTACGCCAAAAATCGAAAAATAGGCGCGTTTTTTTT
GGCACACCCGGTACCTAAACTAGGAAAATTTTTACATTATTGTTTTCCAT
CTGTTGATCAATATTATGTCCTTTTTCACACGATAGGCAGTGGTGCGAAG
TTTTTGATGAGACCATTGGATAGTTTTATTCGTGGAACAATCGGTGCTGA
CAACGAGTTCCTCAAACCAACATTGTAAGTGCCATTACTGGAAAACTCTA
TTGTATTTACTTGTAAGTCAACAATTCTCTTAGAAACCCTATCAATGAAA
ACTAGTTTGTACTCACATTTTAATTGTCTTTTTTGGAAACTCTATCGTTT
TTATTAAAATATTAGGAAAACAAATTAACCCGAAAAAGAAGTGAGCGTTT
CGCTGTCAAGGGCAAATTTTGGATTCTAAAATCATTCACAAACTCATTTC
TCAACTGTATCTTGATTCTTTCGTCTGCCGTATATTTTGAATCAGTTCCC
TATTCCATTGAGTTCAAACAAATGTTCAGCTAAATCTGTTAAAAGTTTCT
GACACAATGCCATTAGACATAAAGTTTTACATAAGTGTTTCCTTTTCATA
TCAGACACGTGTTTCATATCAGGACGGTGTCTGCTTATTGTTATATTGTG
CTGAGTAAGCACTCAATATCACTCTTATTTTAAAAACATAACCTTTAAAG
CTCTACTAACATTTACAAAAGCCTAAGAGATGGATTGATTAAGTATTAAG
TCTCTTTAACCCGAACCTCTACACTTCGAATTAAATGTCTTCTTAACTCG
AGCAAGTTTTCTCGTCCCTTCAGTTAACAATACCTTGTAAACCTTACTTC
CATAACTCGAACAAATTTGTGTTCCCCTTGCGTTCTCAAGTTATGGAGAC
TCCACTGTATAATAATCCATTTTCTCAAAGCTCTACGAAACATGCTGTTT
TATCAAGCATTCTAATCTTACTGCAACGAATGGGTTATTTCAAAATGGAC
GAACCACTTCTCATCACCATCTTGTTCGCCATTGCCGCTACCGTACAATT
AGCTCTTCTCTTCACCGACATTGAGGATCCTTACAAGAAGATTGAGGAAG
TGTTGGCAGCCATTTTGTTCAAGTTTCCTGACGAAGCGGTCAAAGAAGTC
AAGAAGAAGAAAGACTGAAAACTCTTGATTGGCTTGAAGTTCGAGTTCTT
CGTCATGTCATTTAGTGGTACAGTTGACACTCTCTAATTCGACATTCCAA
TTCACATTTCGATAATATTGAAAGTCACCGTCAACAAGAAACCCTCATAA
ACGACGCTCTACTATTTGGTACACTGCTTATTCGTTGAAAATCCTATTCC
CCTATGAAAATCGAATTAGAGAGCGTCAACTGTATATAAAATCTTTTCAC
CTCACATGGCATGAGTTGACCCGGGCAGTTCATTCAC

Coding sequence (CDS) from alignment at sc0000072:427555..430491-

>TCONS_00006941 ID=TCONS_00006941|Name=TCONS_00006941|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0000072:427555..430491- (Clytia hemisphaerica)
TATCTAGTAATGTTCTCACCTGCTGATATCTTTTACAAGATTGTCAACAT
CAACGCTGTAAAGGCCATTATTTTGGTTTTGAAAGAAGTCCAGCGGGTGC
GAAATATTCAAAATGGCGTCAATACGGTGGCCGAGACTTACCGAGGTTCA
AGTCTTGATCAAATTTTCTTCGTGGCTGTTCTGATTGGTAGTGTTCGAGG
CAGTGGTGCGAAGTTTTTGATGAGACCATTGGATAGTTTTATTCGTGGAA
CAATCGGTGCTGACAACGAGTTCCTCAAACCAACATTCTCTACGAAACAT
GCTGTTTTATCAAGCATTCTAATCTTACTGCAACGAATGGGTTATTTCAA
AATGGACGAACCACTTCTCATCACCATCTTGTTCGCCATTGCCGCTACCG
TACAATTAGCTCTTCTCTTCACCGACATTGAGGATCCTTACAAGAAGATT
GAGGAAGTGTTGGCAGCCATTTTGTTCAAGTTTCCTGACGAAGCGGTCAA
AGAAGTCAAGAAGAAGAAAGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003882XLOC_003882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006941-exon-sc0000072-1575043694:430427..430491TCONS_00006941-exon-sc0000072-1575043694:430427..430491Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1575043694:429732..429867TCONS_00006941-exon-sc0000072-1575043694:429732..429867Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1575043694:428768..428855TCONS_00006941-exon-sc0000072-1575043694:428768..428855Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1575043694:427555..428061TCONS_00006941-exon-sc0000072-1575043694:427555..428061Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1510915933:430427..430491TCONS_00006941-exon-sc0000072-1510915933:430427..430491Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1510915933:429732..429867TCONS_00006941-exon-sc0000072-1510915933:429732..429867Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1510915933:428768..428855TCONS_00006941-exon-sc0000072-1510915933:428768..428855Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1510915933:427555..428061TCONS_00006941-exon-sc0000072-1510915933:427555..428061Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1491911889:430427..430491TCONS_00006941-exon-sc0000072-1491911889:430427..430491Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1491911889:429732..429867TCONS_00006941-exon-sc0000072-1491911889:429732..429867Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1491911889:428768..428855TCONS_00006941-exon-sc0000072-1491911889:428768..428855Clytia hemisphaericaexon
TCONS_00006941-exon-sc0000072-1491911889:427555..428061TCONS_00006941-exon-sc0000072-1491911889:427555..428061Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006941-proteinTCONS_00006941-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:427555..430491 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.88609	5.71231	1.65477	1.57817	5.63083	4.70169	4.27372	5.67415	6.44126	7.3919	6.44782	4.14493	7.64813	5.74365	10.9479	13.3348	17.2465	15.4453	5.26225	8.22009	9.1566	11.3133	17.2139	20.5913	17.5205	16.5053	25.6351	18.4072	19.4556	16.4098
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007866TRIC_channel
IPR004042Intein_endonuc
Vocabulary: Molecular Function
TermDefinition
GO:0005261cation channel activity
GO:0004519endonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015672monovalent inorganic cation transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015672 monovalent inorganic cation transport
cellular_component GO:0016020 membrane
molecular_function GO:0005261 cation channel activity
molecular_function GO:0004519 endonuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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