|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006943 ID=TCONS_00006943|Name=TCONS_00006943|organism=Clytia hemisphaerica|type=transcript|length=394bp
AAAACATTCTTCTATCAACCATGGATGAATTGACCAATTATCTCCAACAA
TTGCCAAACACTTTGATGGACATACCAAAGAATATGCCAAAGACGCCGCA
ACAATTAGTAGAAAGTGTGAACACGGTCAAAATGGCGCCCTATTTCTTGT
TTGTGCATTATACCCTGGTCACACTTAGTTTGAGAGCTCGATCAGGTTCA
AGAGATTATGCCAAATCACATCCGTTTGCAAGTTGGTTTGTGTGTCTGGT
TTCCTGTCTAGGTGGTGCTCTCATCTCAGCTTTCTTGCTGGGGAAGTCAA
CATTGAATGTATTTTATGTGAATAATACCAACTTGATTTACATCACAATT
GTATGGTATGTTGCGATTTAATATTGAACCTGATTGAACTGGAC Run BLAST on NCBI protein sequence of TCONS_00006943-protein >TCONS_00006943-protein ID=TCONS_00006943-protein|Name=TCONS_00006943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
NILLSTMDELTNYLQQLPNTLMDIPKNMPKTPQQLVESVNTVKMAPYFLF
VHYTLVTLSLRARSGSRDYAKSHPFASWFVCLVSCLGGALISAFLLGKST
LNVFYVNNTNLIYITIVWYVAI Run BLAST on NCBI transcript from alignment at sc0000072:432818..434299- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006943 ID=TCONS_00006943|Name=TCONS_00006943|organism=Clytia hemisphaerica|type=transcript|length=1482bp|location=Sequence derived from alignment at sc0000072:432818..434299- (Clytia hemisphaerica)
AAAACATTCTTCTATCAACCATGGATGAATTGACCAATTATCTCCAACAA
TTGCCAAACACTTTGATGGACATACCAAAGAATATGCCAAAGACGCCGCA
ACAATTAGTAGAAAGTGTGAACACGGTCAAAATGGCGCCCTATTTCTTGT
TTGTGCATTATACCCTGGTCACACTTAGTTTGAGAGCTCGATCAGGTAAT
GGTATACTTTGGTTTGAGAAAGTAGAAGACTGTTTTTTAAAAATAAATGT
ACTTTAACGTCATATTGCGTTCACATTAAGTCTAGCACCTAAGTTCGCCG
TAAAATCCTAAGAGTTATGGTTAAATTTTGAGATCAAATCTCCCAAAACA
TAATTATCATCAATATACAGAGGATTTCTACTGTTCTTTCTACTGCAGCG
GAGTCTCCATGATTTGAACTTCTGAAACTCGATCCTCTCCTTAAATCGAA
CAAGTTTTCTGATCCCTTCAGTAAACAATGCCTCATAGATCTTACTCCAT
AACTAGAAATTTCCTAAACTCTAACAAATTTGTTTTCCCTGTGTTTGTGT
TCGAGTTATAGGCTCGACTGTACTTTAAGTAATTTGGCAATCGTCAAATT
GCGGTCACATTAGTTCTACCACCATGAAATCCTAAGAGTTATGGTTAAAT
TTTGAGATCAAATCTTCTAAAAACCTAATTCGTAATTGTCAAGATGCAGA
GCATTTCTACTGTTCTCTCTTGTGTGAATTTCTTGTAAAAGTGATAATAG
AACGATATAAAATCATACACAGTGAGGATTGTCTAAAGCGTGTCCGCTTT
ATACAGTGTTTAAGTTGTTCTGTCTCAGAGACGGGTTTTCATTCGTTCCA
GTATATAAAGAGGTTTCTCCGTACCAGAATACTGTGTCGGATAAATCTGT
GTCGGACGAAAAAACCGTGCCATAGTTTGCAGTCTGGTGTGAACCCCCCC
AGGTTTATTTTATCCCCCCTATACCCATCCCCCTTCTGTAATGAAACCTT
ACCCCACTTTTTTGCAGAAAATATGAACTCGCTCTATGCGCTACCAATGT
GATAAAAGAGTACAAGTGTACAAAATGTATACAGTCAAGAGTCAAAAATT
TCACAATATAAAAATATAACTAGCGTTTTTTAATAACATGATACACTTGT
CTTTTGATGGTACATATTTTAGGTGCAATCTATGCTTGCTTTGGCCACTG
ATTTTAAATGGTAAGAAATTCTTTAGGAACTTCAAAAGCCACGTTAAATA
ATTTTTCATTTACCTTTGCTTACTTTTCGCCAGGTTCAAGAGATTATGCC
AAATCACATCCGTTTGCAAGTTGGTTTGTGTGTCTGGTTTCCTGTCTAGG
TGGTGCTCTCATCTCAGCTTTCTTGCTGGGGAAGTCAACATTGAATGTAT
TTTATGTGAATAATACCAACTTGATTTACATCACAATTGTATGGTATGTT
GCGATTTAATATTGAACCTGATTGAACTGGAC Coding sequence (CDS) from alignment at sc0000072:432818..434299- >TCONS_00006943 ID=TCONS_00006943|Name=TCONS_00006943|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000072:432818..434299- (Clytia hemisphaerica)
GTTCAAGAGATTATGCCAAATCACATCCGTTTGCAAGTTGGTTTGTGTGT
CTGGTTTCCTGTCTAGGTGGTGCTCTCATCTCAGCTTTCTTGCTGGGGAA
GTCAACATTGAATGTATTTTATGTGAATAATACCAACTTGATTTACATCA
CAATTGTATGGTATGTTGCGATTTAAAACATTCTTCTATCAACCATGGAT
GAATTGACCAATTATCTCCAACAATTGCCAAACACTTTGATGGACATACC
AAAGAATATGCCAAAGACGCCGCAACAATTAGTAGAAAGTGTGAACACGG
TCAAAATGGCGCCCTATTTCTTGTTTGTGCATTATACCCTGGTCACACTT
AGTTTGAGAGCTCGATCAGGTTCAAGAGATTATGCCAAATCACATCCGTT
TGCAAGTTGGTTTGTGTGTCTGGTTTCCTGTCTAGGTGGTGCTCTCATCT
CAGCTTTCTTGCTGGGGAAGTCAACATTGAATGTATTTTATGTGAATAAT
ACCAACTTGATTTACATCACAATTGTATGGTATGTTGCGATTTAAAACAT
TCTTCTATCAACCATGGATGAATTGACCAATTATCTCCAACAATTGCCAA
ACACTTTGATGGACATACCAAAGAATATGCCAAAGACGCCGCAACAATTA
GTAGAAAGTGTGAACACGGTCAAAATGGCGCCCTATTTCTTGTTTGTGCA
TTATACCCTGGTCACACTTAGTTTGAGAGCTCGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006943-exon-sc0000072-1575043694:434105..434299 | TCONS_00006943-exon-sc0000072-1575043694:434105..434299 | Clytia hemisphaerica | exon |
| TCONS_00006943-exon-sc0000072-1575043694:432818..433016 | TCONS_00006943-exon-sc0000072-1575043694:432818..433016 | Clytia hemisphaerica | exon |
| TCONS_00006943-exon-sc0000072-1510915933:434105..434299 | TCONS_00006943-exon-sc0000072-1510915933:434105..434299 | Clytia hemisphaerica | exon |
| TCONS_00006943-exon-sc0000072-1510915933:432818..433016 | TCONS_00006943-exon-sc0000072-1510915933:432818..433016 | Clytia hemisphaerica | exon |
| TCONS_00006943-exon-sc0000072-1491911889:434105..434299 | TCONS_00006943-exon-sc0000072-1491911889:434105..434299 | Clytia hemisphaerica | exon |
| TCONS_00006943-exon-sc0000072-1491911889:432818..433016 | TCONS_00006943-exon-sc0000072-1491911889:432818..433016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:432818..434299 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007866 | TRIC_channel |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005261 | cation channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015672 | monovalent inorganic cation transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015672 |
monovalent inorganic cation transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005261 |
cation channel activity |
Blast
The following BLAST results are available for this feature:
|
