TCONS_00007007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007007
Unique NameTCONS_00007007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007007 ID=TCONS_00007007|Name=TCONS_00007007|organism=Clytia hemisphaerica|type=transcript|length=480bp
atttattttagcgaatcagcttttcgaaaaatttcgcgcggataaatttt
agcgatctgtcaaTTCGGTGCGTTTtaacgagatttattttagcgaaaat
agggaaaactcgctaaaacgctaaaattagtctcgctaaaatttctacga
ttaaagtattacttgttccATTGTGGCCTTCTTCTTATTACTGGCTATTG
TTGACATCGAACGGCATAGAATTCGAAGCttttgtgaaaatatttttatt
acttGACCCTTATTATATCAATTATTCAATACAAAATGTATATCAATTAT
TCAACACAAAATGTATAACTGACGGATTTGCAAGCTTCTATTCTGTAGCa
tcatttttctttccttttatgTTGACAAACTTGGTGACTACATTTGCAAG
ATTTATTACATCACGATCAACGTTACACGTGGTGTGTTTTATGTGTCAAT
GCCTCTGTGCAAACACGTCTTTTGCGTCNN
Run BLAST on NCBI

transcript from alignment at sc0000073:51305..51784+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007007 ID=TCONS_00007007|Name=TCONS_00007007|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0000073:51305..51784+ (Clytia hemisphaerica)
atttattttagcgaatcagcttttcgaaaaatttcgcgcggataaatttt
agcgatctgtcaaTTCGGTGCGTTTtaacgagatttattttagcgaaaat
agggaaaactcgctaaaacgctaaaattagtctcgctaaaatttctacga
ttaaagtattacttgttccATTGTGGCCTTCTTCTTATTACTGGCTATTG
TTGACATCGAACGGCATAGAATTCGAAGCttttgtgaaaatatttttatt
acttGACCCTTATTATATCAATTATTCAATACAAAATGTATATCAATTAT
TCAACACAAAATGTATAACTGACGGATTTGCAAGCTTCTATTCTGTAGCa
tcatttttctttccttttatgTTGACAAACTTGGTGACTACATTTGCAAG
ATTTATTACATCACGATCAACGTTACACGTGGTGTGTTTTATGTGTCAAT
GCCTCTGTGCAAACACGTCTTTTGCGTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003922XLOC_003922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007007-exon-sc0000073-1491911889:51305..51784TCONS_00007007-exon-sc0000073-1491911889:51305..51784Clytia hemisphaericaexon
TCONS_00007007-exon-sc0000073-1510915933:51305..51784TCONS_00007007-exon-sc0000073-1510915933:51305..51784Clytia hemisphaericaexon
TCONS_00007007-exon-sc0000073-1575043694:51305..51784TCONS_00007007-exon-sc0000073-1575043694:51305..51784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:51305..51784 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.4105	19.2113	12.1219	7.60886	4.00995	2.02882	3.93072	2.36226	1.72483	2.11733	4.05756	2.02891	3.14419	2.82847	1.26798	0.724995	0.532879	2.01736	1.0536	2.14783	2.1475	2.89954	22.3407	22.7036	3.28904	4.21238	89.5883	70.2328	16.2573	13.8602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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