TCONS_00007009 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007009
Unique Name	TCONS_00007009
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2178

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000073:85751..97028+
coding sequence from alignment at sc0000073:85751..97028+

transcript sequence

>TCONS_00007009 ID=TCONS_00007009|Name=TCONS_00007009|organism=Clytia hemisphaerica|type=transcript|length=2178bp
AGCAAAGCTGAAAACTAATAATCATTTTGGTTTggaattaaaactttttt
tcagttaGAAATAAGGAACAATAAAAATGCCGACTGTAGGGATAAAGAGA
GATTTGCTCTTCCAAGCATTGGGAAGGGAGTACACTGTTGAAGAATTTGA
AGAGCTTTGTTTTGACTATGGCCTAGAATTGGATGAAGTGAcatcagaaa
agacaatgatTTCCAAAGAGAAAGGAGAAGGAAAAGCATCAGAAGCCTCT
GAAGAAATCATCTATAAGATTGATGTTCCTGCTAATCGatatGATTTGCT
TTGTCTGGAAGGATTGACACGCAGTTTATTGGTTTTTCAAGAAAAGATGA
AGATTCCACATTTCAAGACAATTTTACCAACAAACCCACAAAAACTTATC
ATTGACAAACCTACAGCAGAGGTTCGCCAGTATGCAGTTGCAGCCGTCCT
AAGGAATATTACGTTCACTCAGGATTCATACAACAGTTTCATTGATTTAC
AAGACAAACTTCATCACAACATTTGTCGCCGTCGGACGCTAGTTTCCATG
GGAACACACGATTTAGATACCATTCAAGGACCATTCACATACACCGCTAA
ACCGCCATCAGAGATTATTTTCAAAGCATTgaatcaaacaaaagaaatga
cTGCTGTTGAACTCATGCAACATTATAAGacGGATAGTCATCTGAAGAAC
TTCTTGCACATCATAGAAGACAAACCTGTGTATCCAGTCATTTATGATGC
TAATGGAATCGTTCTCTCCATGCCACCTATTATTAATGGTGACCATTCCA
AAATTACCTTAAACACAAAGAACGTCTTCATCGAAATCACTGCAACTGAT
TTGCATAAGGCGAAAGTTGTTCTGGACATTTTGACCACTGCATTCAGTTG
TTATTGCGCTGATAAATTCTCCGTTGAAATTTGTGATGTCATTTCTGCTG
ATGGCACGACTAACCAAACACCAgaatTGGCATACCGCGAAGAAGTTATC
TATCCTGAATACGCGTGCAAAACTATCGGAGCAAGATTGAAAGGTGACAA
GATGGCGAAACTGTTGacgaaaatgtttttgaaaagcgAAGTGTTGAAAG
ATGGTCGTTTGAGATGTATTGTACCGCCTTGTAGAGctgATGTTATTCAT
GCTTGTGACATTTACGAAGATATCGCCATCGCTTATGGATACAACAACAT
AGAAGAACGTATCCCAAGAACGAGCACCATCGCTCATCAGCTTCCCATCA
ATAAATTGAGTGACTTGATCCGAATGGAGATCGCATTCGCAGGTTTCACT
GAAGCTCTTACTTTCTCCTTGTGCTCACGCGAAGACGTTGCAGAAAAGTT
GAATCGTCCAGACGGTACTAAAAATGCCGTCCATATTTCCAACCCCAAAA
CAGCGGAATTCCAGATCGCTCGAACGACATTGCTCCCTGGCTTACTAAAG
ACGATTGCCAACAACAAAAACATGCCTCTTCCTTTGAAATTGTTCGAGCT
CTCTGATGTCGTTCTCATTGATGATCAAAAAGACGTCGGTGCACGTAACG
AACGTCGGTTATGTGCAGTGAATTGCAGTAAAACACCAGGCTTCGAAGTC
ATCCACGGCTTATTGGATCGCCTGATGACGGTATTAAATAAAACACCGAC
TGCAGATAAAGTGAAAAATCCGAATGAAGGATATCGCATCTCCAAAGGAC
AAGATCCAACATTCTTTCCGGGCCGTTCTGCGGATATTTTGTTCAACGGA
AAAGTCATCGGACAAATGGGAGTTGTTCACCCGGAAGTACTCGGAAAATT
CGAGATCACAAACCCATGTGCTGCTCTAGAAATTAATTTAGAAGTTTTTC
TATAGACAAATAtctatttttataattttagttCTGTCTATTGCATTTTT
ACGCGAATTATTTTATTAACTCTATGAATGAATGAACGGACAGATGACAT
ATAAGTGAACGGtatttatttatcaaaataaacaacGAACGGAGACCTGG
TTTTCCTCTTCTCACTTCATTTTTGAAAGAATCTTAAGGTCTTAAGGGTA
tgcttttaaaagaaattgggTGATTCTACttcatatccatacaggggCGT
GAACGAACATTTTCAGGTTGTAATCGGaaaagaagaatttccaggggtaa
ATGACTGATTTTAATTCGTCCATCCTCC

Run BLAST on NCBI

protein sequence of TCONS_00007009-protein

>TCONS_00007009-protein ID=TCONS_00007009-protein|Name=TCONS_00007009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp
MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKG
EGKASEASEEIIYKIDVPANRYDLLCLEGLTRSLLVFQEKMKIPHFKTIL
PTNPQKLIIDKPTAEVRQYAVAAVLRNITFTQDSYNSFIDLQDKLHHNIC
RRRTLVSMGTHDLDTIQGPFTYTAKPPSEIIFKALNQTKEMTAVELMQHY
KTDSHLKNFLHIIEDKPVYPVIYDANGIVLSMPPIINGDHSKITLNTKNV
FIEITATDLHKAKVVLDILTTAFSCYCADKFSVEICDVISADGTTNQTPE
LAYREEVIYPEYACKTIGARLKGDKMAKLLTKMFLKSEVLKDGRLRCIVP
PCRADVIHACDIYEDIAIAYGYNNIEERIPRTSTIAHQLPINKLSDLIRM
EIAFAGFTEALTFSLCSREDVAEKLNRPDGTKNAVHISNPKTAEFQIART
TLLPGLLKTIANNKNMPLPLKLFELSDVVLIDDQKDVGARNERRLCAVNC
SKTPGFEVIHGLLDRLMTVLNKTPTADKVKNPNEGYRISKGQDPTFFPGR
SADILFNGKVIGQMGVVHPEVLGKFEITNPCAALEINLEVFL

Run BLAST on NCBI

transcript from alignment at sc0000073:85751..97028+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007009 ID=TCONS_00007009|Name=TCONS_00007009|organism=Clytia hemisphaerica|type=transcript|length=11278bp|location=Sequence derived from alignment at sc0000073:85751..97028+ (Clytia hemisphaerica)
AGCAAAGCTGAAAACTAATAATCATTTTGGTTTggaattaaaactttttt
tcagttaGAAATAAGGAACAATAAAAATGCCGACTGTAGGGATAAAGAGA
GATTTGCTCTTCCAAGCATTGGGAAGGGAGTACAGTAAGTTTTCATTata
tattgcaaactttttcttgcttttagATTTTGAACATCACTCTAAAAGCT
TATTATTCTGATTTAGTCCAATTATTGAACTTCTTTTTGTGTCCAAATTC
TGAACAGATATTAGCCATTAACCCAACATTATAATGTTTTAAccaaattt
tagtaaaaatgtTACCATAATCTAAAAGATTGAAAGATAAATTTTCTTCC
CTTTTTAccctttttatctttttttgtccatttcagTCTATTTTAACATA
TGGAACTTTACTATTAATTTCTCTGCTTTAAATGTGCACTGTGTTTTGCT
ATCATgtagaaaccactctcaaggaaaTTACTGTAATTACGCTGACATGG
TTCTCACATGATAGCAAAACACAGTGCACAATGCCAAAAAAGAGTGCACA
ACTAAGAGGCATGACTCCTACTATTTACTCTCTTTTTAGCTGTTGAAGAA
TTTGAAGAGCTTTGTTTTGACTATGGCCTAGAATTGGATGAAGTGGTAAG
AAaagaattaaatattttttttgatcttCCCAGATGTATTTTCTGTTTAA
GGATAGATAGcaaagctctatctagtgttttatatatgaTATTGGTAATC
TTTGCTGAATAAGATGAATACTCACACAAAGttacagggctgcaaataag
cgtcggtCATCNaacttttaagagtgtttctaagttaacttttatcaact
tgctttcttcgtaacttccaaaggtgtttctaagatcacttttatcgaat
caatttctctgttaaANggctgcaaataagcgtcggtcatcggtcaatgt
ccgactgaaaaagccatttgaccgactgaaaatcttttgtgtcggtcatg
atgtccgaaAGAAAAAACGAATAAACCAATAActgagagttgaaaataaa
tctcttaaCACACTtgtctcttacttagcctattcctttaatactcgctt
cctttgtagctttcagggtgtttctaagttaacNatacactgaatgaccg
acaggattttgagtttgaccgacaggatttcatttctgtcggacatgatg
tccaattgactaaaaatatttatttgcagccctgaaGTTATTGTTATTAA
TGataattataattattttaaatcaatgaaatacaacttttattcaattt
ttcttgtgtATTCATTTATATTGACAATAGAcatcagaaaagacaatgat
TTCCAAAGAGAAAGGAGAAGGAAAAGCATCAGAAGCCTCTGAAGAAATCA
TCTATAAGATTGATGTTCCTGCTAATCGGTAAAACAAGCAAAGTGTTCAG
TTTTTATCccttttataaatttatttcaaacaaTATTTATCAtcgaattt
ctttttaatcTGTTTTTGAATTATCAGATGtttcgattttttgttttttt
tagatatGATTTGCTTTGTCTGGAAGGATTGACACGCAGTTTATTGGTTT
TTCAAGAAAAGTAAGGATCAAACAAAGAACCTTGATTTTTCATAGGGAAG
AATGTTTCTAACTGAGAAAGAACTAACTTTTTAGCCACCAAGTAGTCCCT
TTATATTACATGATAGAACCGATGAGAAAACTGTGTCTTTGAGGCAGTCA
GCTGTAGATGCCAGCAATATTCATTTACTGCagaatttttgctattttta
aaactcaatttaATTATATTACTTCATTTTTCAGGATGAAGATTCCACAT
TTCAAGACAATTTTACCAACAAACCCACAAAAACTTATCATTGACAAACC
TGTAAGAAAATCCCTAAAACAACGATTAAATTATCAATATGTTACTGTAA
TAAAGCATTAACTTTTCCTCATTTTAACATTTCTTCTGGTTTTTTGGATG
ACTGACTAGTTTCTAGAAAGAAGATCAGTTTGAATTCAGGAAAGGTGTGT
TTTCCTAGGGGTTTCCGCACCAAACcttgaaaaacttaaaaatgaacTCT
CAACCAACCTTGAAAAAGCATGATTCTCATAACATGTTTATGTCTTGTTT
TGGCTCAGATATTTGGGCtgtgtttttttctatttttgtttgcttgCAAT
CATCTTtatgttttgtaataaaaaagttGCAAATAGTCTCTCTTGATCAA
TCTGAGTTATGAAAATCTTGTAAAGGATCTTCTACACTGTCAAAGACCTT
AAAAATCTCCTACATTTTGGTGAAAAAACCtctaaaatcttgaaaatggg
GAGACACCATGTTGTattgtttatctttttctgtATTCAGACAGCAGAGG
TTCGCCAGTATGCAGTTGCAGCCGTCCTAAGGAATATTACGTTCACTCAG
GTCAGTAAACACACAGttttttgttatcatttttgttAATGTTGTTTTAA
AGAACATACGTGATCTATAAAATTATCTGATTTatacactttttcgaccg
tagccaccaattgtcGCGCAGGCATTTTTTTCCGCCTTATccccctaaaa
ccgtcccagtccttttttcgcacgtatggacaatagaaaaatgtgccaaa
aaaggattggatcgagtttagggggatgatTAAATatttaagtggcacgc
gcctgaccgcgcgactacgatcgaaaaggtgtattgtatgTCTTGACTTG
CATTCAGAGTCTTAATAATATTAGGCATTCTCGTACTCAagatggaaaaa
agtttttgtacgTTTacatcaaaatattaaaaaaacttcTGCATCAAAAC
AGAAGCTTGTACATAAACTATTAAAAGCATTGATTAACAAACAAATAATT
AAAGGCAAAAACACTGGCTTCTTCACTTGTTGATTATGTCACTTGTTGAT
TATGTCACTTTTTGAAATTGCAGGATTCATACAACAGTTTCATTGATTTA
CAAGACAAACTTCATCACAACATTTGTCGCCGTCGGACGCTAGTTTCCAT
GGGAACACACGATTTAGATACCATTCAAGGACCATTCACATACACCGCTA
AACCGCCATCAGAGATTATTTTCAAAGCATTgaatcaaacaaaagaaatg
acTGCTGTTGAACTCATGCAACATTATAAGGTAACTTATTTTGCTTGGCT
TTTTAGATCATACTATGATTTGTTTACTAGCTAACTTCACCTAAATCTAA
TTTAAAATATCAGCAATCATAGCATAGTAATTAAAGTCtatttttttcac
taaatggAACATATATTTGATCTAAAAATGGTAGTGGAGCCATggcaaat
caaaaatattttcagcttccTCAAATGAAAATGTCAATCACTTTATATTC
ATTGTGTTCCATTCTTAACTTGTCGCTGCTCACATAAAATATGtttattt
ataaattttgattaaGCCTGATTCATAAGTCAATTTAGGGTTTCATCAAA
TTAAAATGCCTTCACGTTATAATTTTTACTCAAGATTAATTCACTCATAA
TGTCATTTAGCATCTCAAATGTGCCGacatctttttattttattttagac
GGATAGTCATCTGAAGAACTTCTTGCACATCATAGAAGACAAACCTGTGT
ATCCAGTCATTTATGATGCTAATGGAATCGTTCTCTCCATGCCACCTATT
ATTAATGGTATTTTAAAGTTTACAAAACTACTAAATTCTGAATCTAGAGA
ACATTATGAAAGAGTTACAAACAGCTATAGTGAAGTTTAACTTTTCCAGG
GAACATCTTTTACACTCTCATAACGATACTAATTTGCTAATTTGTATTGT
TTTAGACATATGGTATAGTagattataaaatatttcaatattttaatgta
atattttaatattttaatatattgTTTGGATGTAAATGGTTTAGGAATAA
GTTTGCAACTAATCAAGGTTAGACGAATCGATGATGTTAGAGTGCTCGAT
GGGTAACCAGAGCCATATAATTATCAAGAAAAGTTATCAACAATTGTTTG
ACGGATTGAAAGATAACTTTTCTTGATAAGTTTGCAACTAGAAATGATTT
TCACTAACACGACATTTCGTTTTCCATCTTTAGGTGACCATTCCAAAATT
ACCTTAAACACAAAGAACGTCTTCATCGAAATCACTGCAACTGATTTGCA
TAAGGTAATATATTTGATAATGAGTTGCTTCGTCGTTTTAAAGTGGATAG
AATTTCGCGATTTTCCTTgtgaatataatttaaaaatCCGAATccgaaat
gaaagaaatttggtgaataaaaggccaattttcgaaatttggtccacgcg
aaattttagattcttgattcgcgaaaaaaaaGTCTAAACATGAATTAATC
CACTTTTAAGGTACTCAAACCCTGAATACTTTTGATTCCGAAAAACAGCT
TTCGCTGAAAAGACTTATCTTTGTCTGATTTAATTtcacattttaatttt
ttcattattttccaGGCGAAAGTTGTTCTGGACATTTTGACCACTGCATT
CAGTTGTTATTGCGCTGATAAATTCTCGTAAGTGGAAATGTATCACCATC
ACACCATTGTTTGTTCTTGTTAACAAATCAGTAGTATTGGTTACTATgtc
ttttatatttattttaaatttcagGGTTGTACTTTTAGCATAGCGAGTTG
tccaaaaaaagtttccataaatttcaaattttgaagtagTGCGTCCTATT
TGTGCTATCGAATTGAAATTTCGTATGGCTAAACTTTGACTTCtggaaat
ttcaatttcagaaACTGATATTTGGTAAAGTTATGAGGTTATTCTGAATC
TAAAATTTCAACTTGAATAAACTGAACAAAAGCACCTTTGAAACTTCTGA
AATTTTATGCAATGAATGAACTTTCCTTCCATTCAGCGTTGAAATTTGTG
ATGTCATTTCTGCTGATGGCACGACTAACCAAACACCAGTAAGTGTACCT
TATGCTTGTCTTGATAAGAACCTTGAAACTAAGAATCGCCAGGATTTTGA
AAAACAGTGATTCGTATTCTATCAGATTCTCTTTCTATTTCATATTTATA
AAAACCTTAACCGGAGATGCGAAGTCAGTAAGGATAAGGAACGTTTTgtc
ttcttttcattttcaggaatTGGCATACCGCGAAGAAGTTATCTATCCTG
AATACGCGTGCAAAACTATCGGAGCAAGGTTTGGTTTGAATGGTTTCGGT
GTAGAATCTACTAGTTTCGAATTACTTTAAGTCTAGGGTTACACTTGGAT
CAATTAGCAAAGCACTATAGaggtttttatgttttgttaagCTATGtaac
ttccgccattatggaagtaAACGTTCGATTTGTGTAAGGAATTGCCTCTA
CGGATttgaacgtttgcttccataatggcggaaattacgtaacttaaaaA
TACATGAAAACCTCTAAAGTTGCACAATTCTGAATAGGCTCTTACGGAAA
CTCGGTTTGTTTCTGAGATTGAAATCAACCTTTAAATGTTGTTGGTTTTC
TAGATTGAAAGGTGACAAGATGGCGAAACTGTTGacgaaaatgtttttga
aaagcgAAGTGTTGAAAGATGGTCGTTTGAGATGTATTGTACCGCCTTGT
AGAGctggtttgtttttgtttgttttttatacgGAATGACTAAGTATTCT
ACATTAATTTTGAAAGATGAGCAAACAGTTTGATAAATGTATAGTTTAGA
TTGGCCCTAAAGTTACTTGATTTTGTGTTgataaaattattattatacTC
CTTTCCCGAGATGTTTCGACTTTTTTATTACAATATGCTTGAGTAAGTGT
TTTATtttggtaaaataaaaatatgtaaaaaaatacaaaacaaataaaaa
aaggattATTTAAAAAGCTCCTTCTggtttttgagtaattttggataaaa
cttttatttttgacaataGAATTAAATGAAAACGAGGCCGGCCTGTATGT
TTCGATTTTTATGAGACATTTGACCACGAATAAACATAgccatattcatg
atatgcaccattgcaatgtcttccattccacccaatagctaattggttga
aagtgacgtattgactgattttacgtcacttacaaccaatgagctattgg
gtggaatggaagacaatGTATACAGTGATAGAgcttttgagctcaaattt
ccagGATTGATTCGTCTCTATAATACAAACATACAAATTTTGAtgtgatt
tgaaaacatttaaaaaatagcCACATCTCGGGTAGGTGTATTGACTCTTA
CCtttaaatgttttctttttttcactaGATGTTATTCATGCTTGTGACAT
TTACGAANaatgttttctctttttcaCTAGATGTTATTCATGCTTGTGAC
ATTTACGAAGATATCGCCATCGCTTATGGATACAACAACATAGAAGAACG
TATCCCAAGAACGAGCACCATCGCTCATCAGGTAAACGTCTTTTTTGGCT
CGGGATGGGCACTATCCGCTCACCAGGTAGGTGGCACACATTGGGAATGA
AGAAAAGATctaattttcgtgaattttgtgATACAGTTGaggctctctaa
ttcgatctttaaggggaattggattttcatcgaataagggagcttatcga
ataagagagtgtcgaattagagaggttCAACTGTATATGatatattatga
cctttttaattttcacaaatGAAATACTTTTCACAAGGAACAGATGGGAG
AATTATTCACATAATCGCaagattttaattgttctaaAGGATTATATATG
TCACCAACTTCATAATCTGAATTTCTGAGGACAGGAAACGAGTCCAGTCA
ATAAACGAGATCGGTGTTAAATATTTGTTTCCTTTTCCCAGCTTCCCATC
AATAAATTGAGTGACTTGATCCGAATGGAGATCGCATTCGCAGGTTTCAC
TGAAGCTCTTACTTTCTCCTTGGTAAGTACAGCTTTATTTCTCACTCAAG
TCCACGTGAAGTTTTCGAGATAAGTTGTTCACTGCCATTTACAAACgaat
tttttgctgattcaagaaatttaaatttacttGGCTTTGATTCTTAGATA
ACAGTCAGTAAACGAGATCGCTGTTGTTAAGCTTTTCTTCTTTATCATAT
AACATATTTTTAACCCGatttatttttgttgttctAGTGCTCACGCGAAG
ACGTTGCAGAAAAGTTGAATCGTCCAGACGGTACTAAAAATGCCGTCCAT
ATTTCCAACCCCAAAACAGCGGAATTCCAGGTAAAAAGATCTCGCTTCGA
ATTTAATCGAGAAAGATAAATAGTTTTTCCttgttttctgaattttcatg
TTATCGGGTAACTATTTTAGCGGGCAgcaattttctttgattgttttCAC
TTAAAACAGAGAAATGGGATGGAATAGAAAAAGTGCTTCTCTGATTACCC
GAAGTGTTCTGATCGTGTCTATTGAAAACTCCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTTTCTATATGCTGTGTTTATAAAA
GTGGTTTTatgtttttcctttttgatccattactttttaaactttcagta
tccagtaacaaattttacactaacttgtagtctgaaaaattctcatcaca
atgataccaaaatattcctaaaaaatttgatagaaattcatcaaagacag
atttgatttcttattttcgtgcactttagcttttaatctaattatgcggt
catgatgccgttatatcattagaatcgctagaaaattctgagcaagaaaa
tataggtatcttttggtataaaagaggtctcccaaaatataagcccctaa
agtttacgcataatttaacctgaaacaaaagaatttcgtcataccactct
aattatacaacttttttaaagcaacaacaaacGAAATCCATTAGCTCGaa
acaaactcccttaagggcaaaggacctggtatatgacgagccgtttgtcT
ATTGTTctgaagaagctgtttttccatctctttacattcctctgcttCAA
AGTAACATGAAAAATTTGACTCCGCTGAAGTGATTTCCCCCTCACACAAT
CACTGCCCTTTacatatccctggaccaagctatatccgccatctttgatc
gaagtttttttagaattagtacccgtaaagaagccattgcaatgttaaaa
attaacgtctaacggtgCTACATCATCAGAATCTTTCGAGGGAAAGTata
tctagcgctctcgatgcatttacactattgagtagtgccgccattagggt
accacttttcaaaaactccgatcaaagattttgcttggccgagATTGaaa
aacttggtccagggtatataaaggacAATGCCCACAATAAACAGTATATT
GCATttaaattatcaaaattcaatCTATACGCTCTTCCTTTTATTAGATC
GCTCGAACGACATTGCTCCCTGGCTTACTAAAGACGATTGCCAACAACAA
AAACATGCCTCTTCCTTTGAAATTGTTCGAGCTCTCTGATGTCGTTCTCA
TTGATGATCAAAAAGGTTTGTTCCGTTCAACCCTCATCTCATTTGCTTAA
TCATTCCTTCGGATTAAAGTTATTGTTGTCTTATTTCAATAACCATACTG
CTCTGGTCGTTTTTGACATGCACATTGTCTAAAAATAACAACGTTAAAAC
ACTgtctttgatttgaaatttgacTCTTATCTtaaggctggtctccactt
ttgcgcgaaatgagcgaaaactttttaacgttttcgacaggttattggtc
ggttgaaaaatgatgCGATTCCATTGGGcaaatctgacgtaacggtttaG
AAAAGTTGAACTTCTTTATTGTTTCGCTCGAAACTTTTTAATGATGTAAG
CTTTTCTGCAGGCAAAAACGAttgacaaaaagttttcgctcgtTTTCGCG
CTTTAGCCTTTATTTGGAAAAACTGGTTCTCAAAAATATGACGAATGCTG
CAGAGACAACTGTTTTAATTTCTTTGTCATCTTTTCACATAGACGTCGGT
GCACGTAACGAACGTCGGTTATGTGCAGTGAATTGCAGTAAAACACCAGG
CTTCGAAGTCATCCACGGCTTATTGGATCGCCTGATGACGGTATTAAATA
AAACACCGACTGCAGATAAAGTGAAAAATCCGAATGAAGGATATCGCATC
TCCAAAGGACAAGGTGAGTGGAAACTTTCTGTTTTCTCTAAGAAAACatg
gcaattatgaaaaattcactatggtcagagcccttaaataagTTTAACAG
TCTAAGTAACTAACAGTCTAAGTTCGTCCAATTTTTGGTTTCCGTCTGAT
CGTGAGAggagtttttttaaatgactcaCTAAACCTAAGCTTTATTGACA
ATTCCCGCCCAAATTTACAAAACCTGGTTGCAACACTTGTTTAAGTTTAT
TGACCCATATTCATATttgaagtttatcgtggcttgaatcacgagattta
cgtttggctacgtttcaagagtttcttctcccatcatcgggcaaaGCGAG
GATGTCTTTCCCGGCTAACTCTGTTTTCTCTCGCTCTACCGGTtggttta
agggctctgaccatagtccaaaaattgattttggtatttgaacataaaag
ttatatttcaggttccttaacacttttaacaaagaattgcctttataaaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttacaaaaagtgct
tagttttaatgggtaattaacttttttgtttcaaaatttctttacactgt
ccgcaaagaattgaactattttaaattttgcggaaaatttttctaaaaag
atgtgtcaaaagttatgaccgtttttttaagcaaaatccagatgaaaaat
tgatgaaaaaccactattttgaagatttcgagacaaagaagcatttacaa
aaattttccgcaaaaattaaaatagttcaattgttcggtaaaagatacaa
cttgtactgcgaaaaattttttaaaatgttcttttcttcgccgaaactaa
gctcttcaaagttgaaatactcttcctcgcaaaagtcttcattttcttct
ttatcaaattttttcaatgcaatttttgaattttcagattcaggaatagt
ttgccTAACAggaaatgtataacatgccatagttttgttagttacatcag
tcagaaaacacattttaaacacggcaattatgaaaaattcactatggtca
gagcccttaagtagtTCATCATACGTTCATAAACAAACTACACAATGGTG
CTTAACCGAAACTTTTAATAGCTTTGACTACTGTATATATTAGATAATGG
TTGGTAAACTTGACTTGACACAAACCCCTCTAATGCGCTGATTGGTGATC
ATTTTTTCGAGGTCCTCACATCCGATTCTGACCTTAGTTTTAATTTATTA
TAGATCCAACATTCTTTCCGGGCCGTTCTGCGGATATTTTGTTCAACGGA
AAAGTCATCGGACAAATGGGAGTTGTTCACCCGGAAGTACTCGGAAAATT
CGAGATCACAAACCCATGTGCTGCTCTAGAAATTAATTTAGAAGTTTTTC
TATAGACAAATAtctatttttataattttagttCTGTCTATTGCATTTTT
ACGCGAATTATTTTATTAACTCTATGAATGAATGAACGGACAGATGACAT
ATAAGTGAACGGtatttatttatcaaaataaacaacGAACGGAGACCTGG
TTTTCCTCTTCTCACTTCATTTTTGAAAGAATCTTAAGGTCTTAAGGGTA
tgcttttaaaagaaattgggTGATTCTACttcatatccatacaggggCGT
GAACGAACATTTTCAGGTTGTAATCGGaaaagaagaatttccaggggtaa
ATGACTGATTTTAATTCGTCCATCCTCC

Coding sequence (CDS) from alignment at sc0000073:85751..97028+

>TCONS_00007009 ID=TCONS_00007009|Name=TCONS_00007009|organism=Clytia hemisphaerica|type=CDS|length=1779bp|location=Sequence derived from alignment at sc0000073:85751..97028+ (Clytia hemisphaerica)
ATGCCGACTGTAGGGATAAAGAGAGATTTGCTCTTCCAAGCATTGGGAAG
GGAGTACACTGTTGAAGAATTTGAAGAGCTTTGTTTTGACTATGGCCTAG
AATTGGATGAAGTGAcatcagaaaagacaatgatTTCCAAAGAGAAAGGA
GAAGGAAAAGCATCAGAAGCCTCTGAAGAAATCATCTATAAGATTGATGT
TCCTGCTAATCGatatGATTTGCTTTGTCTGGAAGGATTGACACGCAGTT
TATTGGTTTTTCAAGAAAAGATGAAGATTCCACATTTCAAGACAATTTTA
CCAACAAACCCACAAAAACTTATCATTGACAAACCTACAGCAGAGGTTCG
CCAGTATGCAGTTGCAGCCGTCCTAAGGAATATTACGTTCACTCAGGATT
CATACAACAGTTTCATTGATTTACAAGACAAACTTCATCACAACATTTGT
CGCCGTCGGACGCTAGTTTCCATGGGAACACACGATTTAGATACCATTCA
AGGACCATTCACATACACCGCTAAACCGCCATCAGAGATTATTTTCAAAG
CATTgaatcaaacaaaagaaatgacTGCTGTTGAACTCATGCAACATTAT
AAGacGGATAGTCATCTGAAGAACTTCTTGCACATCATAGAAGACAAACC
TGTGTATCCAGTCATTTATGATGCTAATGGAATCGTTCTCTCCATGCCAC
CTATTATTAATGGTGACCATTCCAAAATTACCTTAAACACAAAGAACGTC
TTCATCGAAATCACTGCAACTGATTTGCATAAGGCGAAAGTTGTTCTGGA
CATTTTGACCACTGCATTCAGTTGTTATTGCGCTGATAAATTCTCCGTTG
AAATTTGTGATGTCATTTCTGCTGATGGCACGACTAACCAAACACCAgaa
tTGGCATACCGCGAAGAAGTTATCTATCCTGAATACGCGTGCAAAACTAT
CGGAGCAAGATTGAAAGGTGACAAGATGGCGAAACTGTTGacgaaaatgt
ttttgaaaagcgAAGTGTTGAAAGATGGTCGTTTGAGATGTATTGTACCG
CCTTGTAGAGctgATGTTATTCATGCTTGTGACATTTACGAAGATATCGC
CATCGCTTATGGATACAACAACATAGAAGAACGTATCCCAAGAACGAGCA
CCATCGCTCATCAGCTTCCCATCAATAAATTGAGTGACTTGATCCGAATG
GAGATCGCATTCGCAGGTTTCACTGAAGCTCTTACTTTCTCCTTGTGCTC
ACGCGAAGACGTTGCAGAAAAGTTGAATCGTCCAGACGGTACTAAAAATG
CCGTCCATATTTCCAACCCCAAAACAGCGGAATTCCAGATCGCTCGAACG
ACATTGCTCCCTGGCTTACTAAAGACGATTGCCAACAACAAAAACATGCC
TCTTCCTTTGAAATTGTTCGAGCTCTCTGATGTCGTTCTCATTGATGATC
AAAAAGACGTCGGTGCACGTAACGAACGTCGGTTATGTGCAGTGAATTGC
AGTAAAACACCAGGCTTCGAAGTCATCCACGGCTTATTGGATCGCCTGAT
GACGGTATTAAATAAAACACCGACTGCAGATAAAGTGAAAAATCCGAATG
AAGGATATCGCATCTCCAAAGGACAAGATCCAACATTCTTTCCGGGCCGT
TCTGCGGATATTTTGTTCAACGGAAAAGTCATCGGACAAATGGGAGTTGT
TCACCCGGAAGTACTCGGAAAATTCGAGATCACAAACCCATGTGCTGCTC
TAGAAATTAATTTAGAAGTTTTTCTATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003923	XLOC_003923	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007009-protein	TCONS_00007009-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000073	supercontig	sc0000073:85751..97028 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.4057	32.2771	8.78266	6.04766	27.3601	22.4652	49.5272	52.5909	40.1453	47.5918	34.7115	28.596	32.0374	30.9813	36.3979	40.389	44.616	40.33	13.0916	17.9685	26.4625	25.3518	40.9673	36.9259	31.1072	34.5304	20.4075	15.1744	30.2381	30.1762

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR005146	B3/B4_tRNA-bd
IPR005147	tRNA_synthase_B5-dom
IPR004531	Phe-tRNA-synth_IIc_bsu_arc
IPR020825	Phe-tRNA_synthase_B3/B4
IPR009061	DNA-bd_dom_put

Vocabulary: **Molecular Function**
Term	Definition
GO:0004826	phenylalanine-tRNA ligase activity
GO:0003723	RNA binding
GO:0005524	ATP binding
GO:0000287	magnesium ion binding
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006432	phenylalanyl-tRNA aminoacylation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006432	phenylalanyl-tRNA aminoacylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004826	phenylalanine-tRNA ligase activity
molecular_function	GO:0003723	RNA binding

Blast

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BLAST of TCONS_00007009 vs. Swiss-Prot (Human)
Match: SYFB (Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3)

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 372/594 (62.63%), Postives = 476/594 (80.13%), Query Frame = 2

Query:   77 MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKGEGKASEASEEIIYKIDVPANRYDLLCLEGLTRSLLVFQEKMKIPHFKTILPTNP-QKLIIDKPTAEVRQYAVAAVLRNITFTQDSYNSFIDLQDKLHHNICRRRTLVSMGTHDLDTIQGPFTYTAKPPSEIIFKALNQTKEMTAVELMQHYKTDSHLKNFLHIIEDKPVYPVIYDANGIVLSMPPIINGDHSKITLNTKNVFIEITATDLHKAKVVLDILTTAFSCYCADKFSVEICDVISADGTTNQTPELAYREEVIYPEYACKTIGARLKGDKMAKLLTKMFLKSEVLKDG-RLRCIVPPCRADVIHACDIYEDIAIAYGYNNIEERIPRTSTIAHQLPINKLSDLIRMEIAFAGFTEALTFSLCSREDVAEKLNRPDGTKNAVHISNPKTAEFQIARTTLLPGLLKTIANNKNMPLPLKLFELSDVVLIDDQKDVGARNERRLCAVNCSKTPGFEVIHGLLDRLMTVLNKTPTADKVKNPNEGYRISKGQDPTFFPGRSADILFNGKVIGQMGVVHPEVLGKFEITNPCAALEINLEVFL 1852
            MPTV +KRDLLFQALGR YT EEF+ELCF++GLELDE+TSEK +ISKE+G  KA+ AS+ ++YKIDVPANRYDLLCLEGL R L VF+E++K P +K ++P    QKLII + TA++R +AVAAVLRNI FT+D Y+SFI+LQ+KLH NICR+R LV++GTHDLDT+ GPFTYTAK PS+I FK LN+TKE TA ELM  YKTD+HLK++LHIIE+KP+YPVIYD+NG+VLSMPPIINGDHS+IT+NT+N+FIE T TD  KAK+VLDI+ T FS YC ++F+VE  +V+  +G ++  PELAYR+E++  +   K +G R   + +AKLLT+M+LKSEV+ DG ++   +PP RAD+IHACDI ED AIAYGYNNI+  +P+T TIA+Q P+NKL++L+R ++A AGFTEALTF+LCS+ED+A+KL        AVHISNPKTAEFQ+ARTTLLPGLLKTIA N+ MPLPLKLFE+SD+V+ D   DVGA+N R LCAV  +K PGFE+IHGLLDR+M +L+  P  DK      GY I   + P FFPGR A+I   G+ +G++GV+HP+V+ KFE+T PC++LEIN+  FL
Sbjct:    1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDK-----GGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 589

The following BLAST results are available for this feature:

BLAST of TCONS_00007009 vs. Swiss-Prot (Human)

BLAST of TCONS_00007009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SYFB	0.000e+0	62.63	Phenylalanine--tRNA ligase beta subunit OS=Homo sa...	[more]

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TCONS_00007009 (transcript) - C. hemisphaerica