TCONS_00007020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007020
Unique NameTCONS_00007020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007020 ID=TCONS_00007020|Name=TCONS_00007020|organism=Clytia hemisphaerica|type=transcript|length=1912bp
CTGGTTTGTCCAAAGCAAAGAATTGTCCATTAGGAGCTTACTGCCCGGTT
AAAACTATCATCCCTATTGACTGCCCAGAAGGAACTTTCAATCCGGAACC
CAGTGGCAAAACACTTGGAGATTGTCAGAATTGCACAGCTGGTGAATATT
GCAAAGGAGTTGGCTTGAACGCGACCAGTGGAAAATGTTTCGCTGGATTT
TATTGTTTGCTTGGTTCTCCTATGCCCAACCCACCTGATGGCAGTGTGTT
TGGTGGTGAATGCCAAGAAGGCTATTACTGTCCTGAAGGTTCTGTCAAGG
CAACAACCGAGGCATGTCTAAAAGCTACATATAACCCCATTAAAGGTGGT
ACCAACTCATCGGCCTGTCTCCCGTGTCCAGGTGGTACCAACTCATCGGC
CTGTCTCCCGTGTCCAGGTGGTAAAGCTTGTACAGGAAAGGGCCTGGCTG
AGCCGGATGCTGTTTGTTCGCCTGGTTACTATTGCATAAGTGGAGCGGAA
CGTGTCGACCCGGTGGATGGAGGGACCGGTGACAGATGTCCGATTGGAAA
TTATTGTCCGGGAAACACGTCAACCTACATACCGTGTGAACCTGGTACTT
ACAGCAATGTAACAACTCTATCCAAATGTGACGAGTGTCCGGAGAGGTAT
TATTGCAACAACCGTATCACGCCTGTCCGGTGTCCACCAGGTTATTACTG
TCCGGctggttctggctacgaacacATTAAGCCCTGCCCGCTTGGAACAT
GGGAcgaaaatGGTGGATTGGCGGAGGAAAGCGAGTGTACGGAATGCCCG
CCCACTAAATACTGTGGAAAACTTGCGACAACTGACTTCACATCTTCCAA
TAGTTCCGGTCTTTGCGCTGCTGGATTCTACTGTAAAAGCGGTATCACAA
CACGAACGCCCTACCCGCCACTCACCAGGGGCGTTGGTGGCGTTTGTCCG
CAAGGGCATTACTGCCCTGAAGGTACGGACGATCCTGACAAATGCCCTGC
TGGGAAATATTCTTCACAAACAGGTTTAGAGAGAGAAGATCAATGCACGC
TTTGTGAGTTTGGTGAATATTGTGAAACGGCTGGTCTCAACGCTACTTCA
GgtaaaTGTGACCCTGGCTTCTACTGTTATAGAGGCGCGAACTCACCAAA
TAACCCAACAGATGACGGAACGAGTGGTCCGTGCCCAATTGGTCATTATT
GTCCTCTCGGAACATCTCATCCTAGAGGGTGTCCGGCCGGAACGTACATG
CCTGTTACCGGACAATCCGAATGTTTCCCCTGCATGGAAGGATATTACTG
TCCGGCCAATTCAACAGATTACAAACCTTACCCGTGTCCGGCAGGTCATT
TCTGTCCGAACGGTACACGATTCGATACGCAAAACCCCTGCCCCAGTGGT
ACCTTCCGCAATCAAACACACGGACAAGAACAGAGCGATTGTTTCCCTTG
CTTGCCCGGTCAGTATTGTGCGAATACGGGTATGGAGAAACCGTCTGGTC
CGTGTGCACCTGGTTTTTATTGCGTGCGTGGATCGAAGAGTCGAATGCCA
TTGGAATATGATAATTTCACATCTGGAGATTGTTTGTGTCCAACCAATAC
CACTGGTGGTGAATGTCAACCTGGTTTCTACTGTCCAGAAGGCTCCTACG
AACCTACGCCCTGTGATGGCGGATATTATTGTGCAGGAAAGAGAAACCAT
AACTCATCCACCCCTTGTCAACCTGGTTTCTACTGTTCCGGTGGTTCGGC
TGTTCCGAATCCGAGGGACGGGATACACGGAAATGTCTGTCCGGAAGGGA
AATATTGCGAGGAGAAAACGGAAATACCGACAGATTGTCCTGCAGGAAGA
TATTCTAATGCTACGGGTAACATGGAGTTGAACGATTGCTCGCTCTGTGA
ACCAGGGAAATA
Run BLAST on NCBI

transcript from alignment at sc0000073:270689..275284+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007020 ID=TCONS_00007020|Name=TCONS_00007020|organism=Clytia hemisphaerica|type=transcript|length=4596bp|location=Sequence derived from alignment at sc0000073:270689..275284+ (Clytia hemisphaerica)
CTGGTTTGTCCAAAGCAAAGAATTGTCCATTAGGAGCTTACTGCCCGGTT
AAAACTATCATCCCTATTGACTGCCCAGAAGGAACTTTCAATCCGGAACC
CAGTGGCAAAACACTTGGAGATTGTCAGAATTGCACAGCTGGTGAATATT
GCAAAGGAGTTGGCTTGAACGCGACCAGTGGAAAATGTTTCGCTGGATTT
TATTGTTTGCTTGGTTCTCCTATGCCCAACCCACCTGTAAGTTCAATCTA
ACTCCCTGTCACTTTTTTGAAAGCTGCTGCAGACAGTGAACTTCGCATAA
TTAGTCAACACTAAGCAAATAAATTAGAGTGAATATGTATGAGAAGCTCT
TCTTAGTTGATATATACCTCATTTCTAATAGGGCAGCTAATAACCTGAAG
AACTCTCCGCTACATGCCTATAAAATCTTCCGCTGAATTTGCGTGAAAAG
GTCAATTATCGTTCAATTACTAAAGTTAATTTATTCACGCGCTCGTTAAT
ACATACGTTTGACGTTATTTCCCTCTTTATTGGAAAGCCAACTCTTTGTG
GGGTTTAGAATTATTGCCAGTCTGTAGTTTATTGAGGATGTAACCTTTTT
AGGATGGCAGTGTGTTTGGTGGTGAATGCCAAGAAGGCTATTACTGTCCT
GAAGGTTCTGTCAAGGCAACAACCGAGGCATGTCTAAAAGCTACATATAA
CCCCATTAAAGGTGGTACCAACTCATCGGCCTGTCTCCCGTGTCCAGGTG
GTAAAGNTCAAGAAGGCTATTACTGTCCTGAGGGTTCAGTCAAGGCAACA
ACCGCGGCATGTCTAAAAGCTACATATAACCCCATTAAAGGTGGTACCAA
CTCATCGGCCTGTCTCCCGTGTCCAGGTGGTAAAGCTTGTACAGGAAAGG
GCCTGGCTGAGCCGGATGCTGTTTGTTCGCCTGGTTACTATTGCATAAGT
GGAGCGGAACGTGTCGACCCGGTGGATGGAGGGACCGGTGACAGATGTCC
GATTGGAAATTATTGTCCGGGAAACACGTCAACCTACATACCGTGTGAAC
CTGGTACTTACAGGTGAGAATAAAAGTTCTTTATCATTGAAAATCATGAC
AAATACTTTCGTTAAAACACAAGTCTATTCCACAATTTATAAGTAGTAGT
GCTGCTAATAAATGCGTGAAATTTCTTCATGTTTACATCATCCAATAATT
TCACTTATCGTTTTTCCTGGTAACTTTTCAATATAAGAAACTCccatatt
tttgagaaattcttttgataaaaaacatcCTGATGTCAttgacctcaaac
aatgaccaaGCTCTCACAAACACTTACAAACAGAAATTTCCTAGCATTTA
AACATTATCGCCTTCTATGCTACATGATTCCTCTAAACGCCTTTTCTTCT
TTACAGCAATGTAACAACTCTATCCAAATGTGACGAGTGTCCGGAGAGGT
ATTATTGCAACAACCGTATCACGCCTGTCCGGTGTCCACCAGGTTATTAC
TGTCCGGctggttctggctacgaacacATTAAGCCCTGCCCGCTTGGAAC
ATGGGAcgaaaatgtaagaaaaaatgttttacagATTCAAGAAATGACTT
CTCTGTCTTTATGCGTGCTTCTAAGAATCGTCGTGAATTTGTTGtgtatt
tgatgaaaaattctaCTTTAAAGGCTCGTGTTAACTTATTAGAACCGTTG
GGACTTGGGAAAAAGTCATTATATTATGCATCTCTTTCTCGTTTTCAGGG
TGGATTGGCGGAGGAAAGCGAGTGTACGGAATGCCCGCCCACTAAATACT
GTGGAAAACTTGCGACAACTGACTTCACATCTTCCAATAGTTCCGGTCTT
TGCGCTGCTGGATTCTACTGTAAAAGCGGTATCACAACACGAACGCCCTA
CCCGCCACTCACCAGGGGCGTTGGTGGCGTTTGTCCGCAAGGGCATTACT
GCCCTGAAGGTACGGACGATCCTGACAAATGCCCTGCTGGGAAATATTCT
TCACAAACAGGTTTAGAGAGAGAAGATCAATGCACGCTTTGTGAGTTTGG
TGAATATTGTGAAACGGCTGGTCTCAACGCTACTTCAGGTACgtactacc
ttatcggggaaaaaaatgtctgagttttatttagtcggggtttATTTTTC
GTCTgcgaaaaatttcgtcacctagaggcattttcgtcactttcccccga
ccaaaatttcaaattcgtcacttttccccgacaaaatttacaatttagtc
actttcacccaactaaattgtccaaatgaaatggtttccttcactagctc
gaaaaaagatcttgtatttcgacgtttaaagcactaatttcggttaataa
aggtgtaaaaaatttagattttaattttggtaggggtttttaaaaaattg
ggtaaaagttttggtcggtgataaaaaaatcgggtaaaagttttgatgGG
GTGATAAAacatcggggaaaaattcgtcgggggaaaaaattcgtcggggg
aaaatttcgtcaccccttcaaaattttcgtcactccccccgacatttttt
ccccgataaggtattcataTACAGCTTTTTTCGGTTTCCGGCACATTTGA
TACAAGACGGTGGTTGTTTCTTCACTCTAGGGGCCGACATTTTCCCTCAA
GACCAATTAGTTTTCTGTAGTCATGAGGGGGGGGGCTTCTTTATTCAAGC
TTTTAGATAGCATGGTTTAACTAAAATATTATAAATCGAATGGTTCCTTC
AGCTTCCAAACCTCTAAAATCGGCAGAATATATGGCAAAAAAGGAATTTC
GCTCCGGATTTTAAAACCCGCAAGTAGTTTATTTTTAAGTGCCTTAACTT
AGGGTTTgaaagttttaacatgagatGGTGATCCAAAAGCTTGGGAATGG
TGCCACTAGACTGACAAAATAGCCTGGAAGCCAGTgtacccctcccaaat
cgaaacaTTCGATTAGATAAATTTAGCAAGCCTGAAAATgtcattctcgc
ccgaactttaaattctgtaaAATGCAAAAATACCTAAAAATGTCAACACA
CCGACCATGATTTtagtctctataattcgaaaaaatCTGCATTCCCCGTG
TGTGgtcgagttatgaagacttcCCTTTGGCACGGGTATAGTAGACATTT
CACTTCTTTCACTATTTCAATTCTCTTCAACTTTTACtgtattttttttc
aggtaaaTGTGACCCTGGCTTCTACTGTTATAGAGGCGCGAACTCACCAA
ATAACCCAACAGATGACGGAACGAGTGGTCCGTGCCCAATTGGTCATTAT
TGTCCTCTCGGAACATCTCATCCTAGAGGGTGTCCGGCCGGAACGTACAT
GCCTGTTACCGGACAATCCGAATGTTTCCCCTGCATGGAAGGATATTACT
GTCCGGCCAATTCAACAGATTACAAACCTTACCCGTGTCCGGCAGGTCAT
TTCTGTCCGAACGGTACACGATTCGATACGCAAAACCCCTGCCCCAGTGG
TACCTTCCGCAATCAAACACACGGACAAGAACAGAGCGATTGTTTCCCTT
GCTTGCCCGGTCAGTATTGTGCGAATACGGGTATGGAGAAACCGTCTGGT
CCGTGTGCACCTGGTTTTTATTGCGTGCGTGGATCGAAGAGTCGAATGCC
ATTGGAATATGATAATTTCACATCTGGAGATTGTTTGTGTCCAACCAATA
CCACTGGTAAGTTTAGTGTTTGATTGTCCAACAACAATCACATATAATGT
AGAGAGATCCGACCCGTTTATATCTTCTCCCCTGCATTGTATATAGAGGC
GGCTTACAAATGTTTAGGAAGCAAAAAATACTCTTTTACATTGTGATTTT
GTTCGATGATACCAAAGGTCGAAGGATATCTCTGACGGTCTgtaacaaca
acaaaatgatTTCCATGGATTTTACTTCTGCACTAAAttttaatggagtg
aatttttatCTGTCCATAAATTTTAGTCATAAATATCCCTTCGTAAAAAT
GATTGTCAATAATATCTTCTGGTATGGAAACTaactttttgaagccttag
tCTTATGATGATACTTTTATGCTAATATTCAATATTTCCTAGGTGGTGAA
TGTCAACCTGGTTTCTACTGTCCAGAAGGCTCCTACGAACCTACGCCCTG
TGATGGCGGATATTATTGTGCAGGAAAGAGAAACCATAACTCATCCACCC
CTTGTCAACCTGGTTTCTACTGTTCCGGTGGTTCGGCTGTTCCGAATCCG
AGGGACGGGATACACGGAAATGTCTGTCCGGAAGGGAAATATTGCGAGGA
GAAAACGGAAATACCGACAGATTGTCCTGCAGGAAGATATTCTAATGCTA
CGGGTAATTTAGATTTTGACCTATTGTTTGAAACGTTTTACTTTATTGTC
TTTCGACTTGTATTTCTTTTTGTAGGGTTCTTCTGAAGATTTTCATGTTG
CTTCTAAAACCTTTGTTTTTGTGGTTAAATATGAACCCAGTTGTATGTGT
TCGTAAATTGTCCTGTCTGTTgctcaattttcttttgatttatcttTAAG
GTAACATGGAGTTGAACGATTGCTCGCTCTGTGAACCAGGGAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003929XLOC_003929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007020-exon-sc0000073-1491911889:270689..270924TCONS_00007020-exon-sc0000073-1491911889:270689..270924Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:270689..270924TCONS_00007020-exon-sc0000073-1510915933:270689..270924Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:270689..270924TCONS_00007020-exon-sc0000073-1575043694:270689..270924Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:271291..271435TCONS_00007020-exon-sc0000073-1491911889:271291..271435Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:271291..271435TCONS_00007020-exon-sc0000073-1510915933:271291..271435Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:271291..271435TCONS_00007020-exon-sc0000073-1575043694:271291..271435Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:271529..271751TCONS_00007020-exon-sc0000073-1491911889:271529..271751Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:271529..271751TCONS_00007020-exon-sc0000073-1510915933:271529..271751Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:271529..271751TCONS_00007020-exon-sc0000073-1575043694:271529..271751Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:272095..272251TCONS_00007020-exon-sc0000073-1491911889:272095..272251Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:272095..272251TCONS_00007020-exon-sc0000073-1510915933:272095..272251Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:272095..272251TCONS_00007020-exon-sc0000073-1575043694:272095..272251Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:272437..272776TCONS_00007020-exon-sc0000073-1491911889:272437..272776Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:272437..272776TCONS_00007020-exon-sc0000073-1510915933:272437..272776Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:272437..272776TCONS_00007020-exon-sc0000073-1575043694:272437..272776Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:273891..274394TCONS_00007020-exon-sc0000073-1491911889:273891..274394Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:273891..274394TCONS_00007020-exon-sc0000073-1510915933:273891..274394Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:273891..274394TCONS_00007020-exon-sc0000073-1575043694:273891..274394Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:274781..275041TCONS_00007020-exon-sc0000073-1491911889:274781..275041Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:274781..275041TCONS_00007020-exon-sc0000073-1510915933:274781..275041Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:274781..275041TCONS_00007020-exon-sc0000073-1575043694:274781..275041Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1491911889:275239..275284TCONS_00007020-exon-sc0000073-1491911889:275239..275284Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1510915933:275239..275284TCONS_00007020-exon-sc0000073-1510915933:275239..275284Clytia hemisphaericaexon
TCONS_00007020-exon-sc0000073-1575043694:275239..275284TCONS_00007020-exon-sc0000073-1575043694:275239..275284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:270689..275284 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0984235	0	0	0.953837	0.0456727	0	1.04181e-09	0.423004	0	0	0.154286	0	0.0718624	0.0396158	0.0520554	0	0.0082635	0.705403	0.790422	0	0	0	0	0.128198	0	0	0	0.0570372	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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