TCONS_00007024 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007024
Unique NameTCONS_00007024
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007024 ID=TCONS_00007024|Name=TCONS_00007024|organism=Clytia hemisphaerica|type=transcript|length=1879bp
GAGAAGATCCCGTGTCCGGCAGGTTCATATCAAGATGAGCTGTATGGACA
GGTTTGTAAAGAGTGTCCTGAAGGTTCTTTTTGTGACGGTTTGATCTTGA
ACGACACACATTGTCAACATGGTGTACAATTTCCACAAAAATGTCCACAA
GGATTCTTCTGTCGACCACAATCCAAAACTGGAAAAGAAAACGCTTGCCC
TAAAGGAACTTACGGTAACCGCACCGGGTTAGCTTACCAATCAGAATGCT
CAGACTGTCCGGCAGGTAAATACTGCGGAAGTACCGGACTTCCCTCATGG
ACGGATGATTGCGATGCTGGATTTTTCTGTAAAGGCAATGCGGAAATAAG
CGCTCCGAATGATGGAACAACTGGAATCATCTGTCCTACAGGACATTATT
GTTTAAGAGGAACCACTTCCGAAGAACCATGCCCGTCCGGTACTTTCAAT
CCTTCGACCGGTCTTGGAGCAATGTCCGAATGTCTGAGTTGTAATTCCGG
ACAATATTGTGGTGGTGTAGGACTGAATAAGACCAGTGGAAATTGCAGTG
CTGGATATTATTGTTCCCACAATGCAACTTCTCCAACACCTACTGATGGN
AAATAAGACCAGTGGAAATTGCACTGCTGGATATTATTGTTCCCACAATG
CAACTTCCCCAACACCTACTGATGGTGTCACAGGTGATGTTTGTCCGTTA
GGTTCATACTGTCCGGTGGGAACAGGCGTACCGAAACAATGTACGGCCGG
TACTTACATGAACGAAACACAAGCGGAAAGATGTTTGGATTGTCCACCAA
GATTCTTCTGTACCAATCGCATCAACCCTGAACCGTGCTCTGCAGgtttt
tattGTCCTGGCAACACTGGTTATGATCAACAACCTTGCCCAACTGGTTC
CTATAGTCCATTAGAACGACTCCAATCCTCCATTGAGTGTCTACCATGTC
CTGCTGGTCAATTCTGTAACCAAATCAACGCGACCACACCCTCAGGTCCA
TGCCAAGCTGGATTCTTCTGCCACAATGGCTCAGATACTGCAACACCCTC
AGGTGGCCATAGAGGCTTCGCGGGGCCATGTCCTGCAGGCCGATATTGTG
AAGCCGGTGACCCTAAAGCGCCTGTGTTATGTCCTGCTGGCACTTTCAAC
AACGAAACACACGGACAAAATTTGACTGATTGCACGCCGTGCAGTGCGGG
TAAATATTGTGAAACGGCCGGCCTTCGATCTCCAACCGGTGAGTGTGAAC
AAGGATTTTATTGTCGCCAAGGAAGTTCCGTAGCTAATCCGTCCGTAAAA
ACAGATGATCATGGACCGTGTCCGATTGGCCATTACTGTCCGGCAAACAC
AGGCAATCCGTACAAATGTCCAGTGGGAACATTTAATGGTTTAGAACAAC
AATCACAGTGTGTGGACTGCCCATCCGGTCATTTTTGTGAACACGGTGCA
TCAAATTATACGGAATGTCCACAGGGATATTATTGCCCCAACGgATCAAC
CATAGCGTGCCCTGAAGGAACGTACAAGAATTTCACTAAAGGTTCATCAC
TCGATGATTGTAAGCCTTGTCCACCAGGCCAGTATTGCCAAGGAGTTGCA
CAAATCAACCCCACAGATGTGTGTGCTGGTGGTTGGTATTGTTCTGGAGG
TTCCTGGACAGATAAACCGACCGGAAATGAGATTTATAACGGAACATGGA
CATGCCCGCTTTATAATATCGGTGGGCGTTGTTTGAGAGGGACCTTCTGT
CCACCTGGTTCACCCTCAGCTCAACAATGTACACCTGGTTTCTACTGCCA
CCAAGACGAAGCTCACAATGTGTCCGGGCCATGCGGAAAAGGACACTACT
GTAGCGGAGGTACCATCGAACAATATCCG
Run BLAST on NCBI

transcript from alignment at sc0000073:280374..286803+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007024 ID=TCONS_00007024|Name=TCONS_00007024|organism=Clytia hemisphaerica|type=transcript|length=6430bp|location=Sequence derived from alignment at sc0000073:280374..286803+ (Clytia hemisphaerica)
GAGAAGATCCCGTGTCCGGCAGGTTCATATCAAGATGAGCTGTATGGACA
GGTAAGCATTTTTTTGTGCGCAAGTTATTTAAAATGGTTCAGTCTTTTGT
TGTCCGATCAGGAATAAACGCCTTGTGTTTTCTATTCAGTTCTTTCAACA
GTTGCCATTCATTCTTTCATTCATTCTACAAAGACCCTCCAAGGAGGATA
CCGCCCTTAAGCGACATCACTTTAGTTGCAATTCATTCTTCAGCGTCAGG
AAACTGGAAGTATCTGcataagaataattttaaagCAGAAAAAGAACTAA
CTTGCAAATACTATACTGCTTCACACTGAGGCAATGAAGTTTCTAGTAGA
ATTCATTTTAGTCACTCAGTCATGAGAATATTATAATACTTTCATGAAAG
AAGCACAGGAAAATTATAAACATCTATATACATTTTCAGGTTTGTAAAGA
GTGTCCTGAAGGTTCTTTTTGTGACGGTTTGATCTTGAACGACACACATT
GTCAACATGGTGTACAATTTCCACAAAAATGTCCACAAGGATTCTTCTGT
CGACCACAATCCAAAACTGGAAAAGAAAACGCTTGCCCTAAAGGTTTGTC
TGTATTTTAGACTAACAAGTATTAATTAATGTCACGGAAGAGCCTTTTGT
TCTATCATTTCGGAAACATAACATAAGGATTtccattcaaattcaaaata
tgtaGTTCAAATCAAACACAAATCTCGTTATCTCGGCAACATTAAATTTC
CAATATTACTTGGTCTATAAACGCAAAACTATTTTGATTTAAGAAACTCA
TGATTAGAGATGGGTGCACTGCTGTTGGGTTTTTCCACCAATTCAATTCA
AACTTCTTCCGCCTCAGACGGATATTCGTCTCAAGGAGGTGATAAAAATC
TTTGCCTACGTATCGTGTAATGTCGATTTTTCGACCAAGACAAAAAAACT
CTGCTTCCACTGACCAATATGTATTTTCTTTTAGGAACTTACGGTAACCG
CACCGGGTTAGCTTACCAATCAGAATGCTCAGACTGTCCGGCAGGTAAAT
ACTGCGGAAGTACCGGACTTCCCTCATGGACGGATGATTGCGATGCTGGA
TTTTTCTGTAAAGGCAATGCGGAAATAAGCGCTCCGAATGATGGAACAAC
TGGAATCATCTGTCCTACAGGTAAGGCTTTTGCTGTGTCCTTTATAGAGA
ATCATATTAGTTTTGTTTTTAGGAATAATGACTAAATGTTTGTTACTTAG
TCAAATATATTTGGTAAACATGAGTCCGTTACCGGTAGGGACTGTCCCTA
atttcaaatagaaaaaaactccTCTACCTCTCAGctgttttttttcgttt
tcattGATCTTCTTGAAGTTTTGTTGCTACTGTGGTTAATGTTGTACTAA
AAGTTGTTGGTTTCTATTCCAGGACATTATTGTTTAAGAGGAACCACTTC
CGAAGAACCATGCCCGTCCGGTACTTTCAATCCTTCGACCGGTCTTGGAG
CAATGTCCGAATGTCTGAGTTGTAATTCCGGACAATATTGTGGTGGTGTA
GGACTGAATAAGACCAGTGGAAATTGCAGTGCTGGATATTATTGTTCCCA
CAATGCAACTTCTCCAACACCTACTGATGGNAAATAAGACCAGTGGAAAT
TGCACTGCTGGATATTATTGTTCCCACAATGCAACTTCCCCAACACCTAC
TGATGGTGTCACAGGTATGTGATCAATGTCGAATGAATTGACACATGATG
CCTGGATATTTTGAAGCAATTCATTTTTGAAGCTCTGTTTCAAACTCCTA
CAACTTTAGAGAAAATAGAGAAATGTGTCGTtctttttatttcgttttcC
AGATTGTCTGAAGCTTGTAATTTTCATATTTCTGAATATAAAGTGTCCAC
GATGGCTATCATCTTGCTTACGTAGATAGTCAAGTAACTAAGGTTTAATC
ATCGATTGGGATTCATAAATTTGGCGATGATTTTGACACATTAAGACTTT
GTTAAATTCTTCTGCTTTCATTCTTGCAGGTGATGTTTGTCCGTTAGGTT
CATACTGTCCGGTGGGAACAGGCGTACCGAAACAATGTACGGCCGGTACT
TACATGAACGAAACACAAGCGGAAAGATGTTTGGATTGTCCACCAAGATT
CTTCTGTACCAATCGCATCAACCCTGAACCGTGCTCTGCAGGTAATATAC
CAAGGGCCTTGGGGAAAACTATAATCTTGTCGCATTGAGTTATCAAATAA
AAGTCTTGTTCGTCCAATTACAGTTGATGCTCTTTAATTCGGTTTTGAAG
GGAAATTAGATTTTCGTCAAATAAGGGAGCGTGTCAAATAACAGAGCGTC
GTTaatgagagttttttgttgacggtcatcgaataatggagtgtaactaa
tagtagaacgtcgaataagagagcgtcaactgtagtaaAAGCAACTCCCT
TGAAATTGTCAGATTAATAGCTAAGCATAGAATGTACCCACCCccccctg
agcttagggggggggctaaagcatttttgcttgattgggggctgtatttt
tcaaaaaatactgggcctagcttgctagggggggctgagtgttgtgtaat
agaactgggggcagagATGATAggttaaagatattttaaattatgttaaa
aatctatgctgtgtGGAAGGTTCTGTCCCtcttgaaaaaaagtttaaatt
taaaTTGAGAATTTCTATGCAAAATCTCTTTGATAATTTTCTTAGTGAAG
GTGGGGCTATGTTTCAAGAATTTAGCCGGGGGCAATTTttcttgcccccc
cccccctgaataatgctgggggctggacccGTCTGCACACTATGTAAGTA
TCAAAAGTTTCTATAGCAGTATCTTGATTTGAAGTAAACACAATTTAAAT
GTTATCATTGTTAGTTTTTGCAAATGCTTATTATCCTGTGATGctctttt
ttcaggtttttattGTCCTGGCAACACTGGTTATGATCAACAACCTTGCC
CAACTGGTTCCTATAGTCCATTAGAACGACTCCAATCCTCCATTGAGTGT
CTACCATGTCCTGCTGGTCAATTCTGTAACCAAATCAACGCGACCACACC
CTCAGGTCCATGCCAAGCTGGATTCTTCTGCCACAATGGCTCAGATACTG
CAACACCCTCAGGTGGCCATAGAGGCTTCGCGGGGCCATGTCCTGCAGGC
CGATATTGTGAAGCCGGTGACCCTAAAGCGCCTGTGTTATGTCCTGCTGG
CACTTTCAACAACGAAACACACGGACAAAATTTGACTGATTGCACGCCGT
GCAGTGCGGGTAAATATTGTGAAACGGCCGGCCTTCGATCTCCAACCGGT
GAGTGTGAACAAGGATTTTATTGTCGCCAAGGAAGTTCCGTAGCTAATCC
GTCCGTAAAAACAGATGATCATGGACCGTGTCCGATTGGCCATTACTGTC
CGGCAAACACAGGCAATCCGTACAAATGTCCAGTGGGAACATTTAATGGT
TTAGAACAACAATCACAGTGTGTGGACTGCCCATCCGGTCATTTTTGTGA
ACACGGTGCATCAAATTATACGGAATGTCCACAGGGATATTATTGCCCCA
ACGggtaagtgaaaatattttttataacgTGTTTGGCTTTTGGTTATGTG
GTCATTACATAAGTATTTTTGATAGAGAAGAGACATTTTCTTTTCTATGA
GAAAGCCTTATGAATTATTAACCATTCAGTTAGAAATGAAGTGatttgac
tctcgctaattcgaacaaattatcAGGTTCCGTCAAGGGGATCCCTCGTA
AATACTCAATTCGAATCCCTTTGTAATTCGAACGACTAGACTTTCCACTG
TAGGAAAATGAAATTCAGTACGTAACATTACATTAACATTACGTTTTAAT
ACAATATCTGACTCGATTTCTTTTAGATCAACCATAGCGTGCCCTGAAGG
AACGTACAAGAATTTCACTAAAGGTTCATCACTCGATGATTGTAAGCCTT
GTCCACCAGGCCAGTATTGCCAAGGAGTTGCACAAATCAACCCCACAGAT
GTGTGTGCTGGTGGTTGGTATTGTTCTGGAGGTTCCTGGACAGATAAACC
GACCGGAAATGAGATTTATAACGGAACATGGACATGCCCGCTTTATAATA
TCGGTAAGATCAGACCCTTACTTTCTTTTACATTAACTTTGTCTTTACCG
TgctttttttgtgattttttacttCTTTGTGATGCCGTCATGTTTTAACA
AAGTGACGGTTTGTAAAATGGGAGggtttttttattaaaagctTGACCTG
CTTAATTTAGAATAATATAGTCAAGTATTACAGGACTCGGTATGGAATAG
AACAAtgttttgaaaacgaggctcgTAGTCATCCCAAGAAGAGTGTATTG
AATAGATATTCCTACAGAAGTTTGGCAAGCCTTATTTTCAAACAGAATCA
TTGGAACGTTATTGTTTTTACGGAAGTAGCTTTAGTCGGTTAGTTAAAAG
AGAAGATGTTTTTTCGATGACGatactaaatattttcatatagAAGCTTT
TTCAGGCATTACTTTCAAACATTAATTGTCTCTTTCTTTGTAGGTGGGCG
TTGTTTGAGAGGGACCTTCTGTCCACCTGGTTCACCCTCAGCTCAACAAT
GTACACCTGGTTTCTACTGCCACCAAGACGAAGCTCACAATGTGTCCGGG
CCATGCGGAAAAGGACACTACTGTAGCGGAGGTACCATCGAACAATATCC
GTTCAATCAAACATACGGAGACATCTGTCCACCGGGTTATTACTGTGTGG
AGGGTTCGAAAGCAGCTGAAGCATGCCGGGAAGGTTTCTTTGCACGTGGT
GAAGGAAATGATGATCCTAATGCTTGTCAACATTGTAAGTTTGTCACGAA
AGGATTTTTTACTGATGTTTGTTAATCAAAGATTTATCCAGTTGATAATA
GCCTGTACCATCCCTACCACGGACgatctttgcttaaaaaaagagTTTCA
AGAACGTGGTTGGTACAGGCTAAGTTGATAAGAAAATACACATAAtaact
ctcgggtacctaataaacgggggtttggaataagcggggtgggtggaaaa
gttctcaaaacttaataagcggggggggggggggataggaataaaaatgt
cctgggtgaagatttttgaaaagcacgctgatacagcagaattacGGCAA
ACGAGCGAactttcaaaagcattttccaaaaaattaataGGCAGATAAGA
ATGTcccgggtggaaaattttcaataaattaatTAGTGGGGgtgcttatt
aggtacccgataGTAGTCGCCATATTATAAACGTTACGGTTTTCACTTGT
TTTCAGGTACGGCTGGAATGTATTGTGATCGCCCCGGACTTCCTGAACCC
TATGGCAACTGTTCGCTCGGATATTACTGCCCGCCCGGTCAAGTCTCTCC
AACACCCGCTGATAAACGTTGCCAGCCTGGGCACTACTGTCCGGTAGCCA
GTCAAGATCATTATGTTTGTGAAGCTGGTACCTACCAACCTGATGCTGGA
AAAGGCGAATGTTTATACTGCCCGCCAGGCTCCTATTGTGATCCGACGGA
AGCCGTCTCAGTGAACGCCAGTGGTACTAACAGTTCAAGCCACGGTGTTG
TCAACCCTTCCATCTGCCCGAAAGGATATTTCTGTCCGCACAAAACCATC
ACTTATAAAGCATTCCCATGTCAGAAAGGATATTTCGGTAACCGAACTAG
TCTGCAATCGCACGATGATTGTTACCCATGTACACCAGGCTATTTTTGTG
ATCGTCAAGGCATGGTTACGCCGCAAGATAAATGTCACGTGGGTTATTAC
TGCTCAGAGAAAGCTTTTTCACCGGAACCGAGGAATGAAACTGAAGGAGG
TGGACCTTGCTTACCCGGCTTTTATTGCGAGTCTGGGTATTCGAGACCAC
TGCCATGCCCCAAAGGCACTTATGGCGCCGCAATGCATCTCGGTCATTTG
AATGAATGTACTGAATGCGATGGAGGTCAATTCTGTCCTGAGGATGGTGC
ATCTGCTCCAAATGGATCATGTCTAGCGGGCTATTATTGTAAGGGACGCG
CAATCTTATCGAACCCAGTCGGAGAAAGTTACGGCGACGAATGTCCGTCT
GGTTTCTATTGCCCTGTAGGAACCACAACACCTTATGCTTGTCCTCCCGG
AACTTTCAACAATCAAACNTAGAAGCTTTTTCAGGCATTACTTTCAAACA
TTAATTGTCTCTTTCTTTGTAGGTGGGCGTTGTTTGAGAGGGACCTTCTG
TCCACCTGGTTCACCCTCAGCTCAACAATGTACACCTGGTTTCTACTGCC
ACCAAGACGAAGCTCACAATGTGTCCGGGCCATGCGGAAAAGGACACTAC
TGTAGCGGAGGTACCATCGAACAATATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003930XLOC_003930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007024-exon-sc0000073-1491911889:280374..280424TCONS_00007024-exon-sc0000073-1491911889:280374..280424Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:280374..280424TCONS_00007024-exon-sc0000073-1510915933:280374..280424Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:280374..280424TCONS_00007024-exon-sc0000073-1575043694:280374..280424Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:280813..280966TCONS_00007024-exon-sc0000073-1491911889:280813..280966Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:280813..280966TCONS_00007024-exon-sc0000073-1510915933:280813..280966Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:280813..280966TCONS_00007024-exon-sc0000073-1575043694:280813..280966Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:281358..281543TCONS_00007024-exon-sc0000073-1491911889:281358..281543Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:281358..281543TCONS_00007024-exon-sc0000073-1510915933:281358..281543Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:281358..281543TCONS_00007024-exon-sc0000073-1575043694:281358..281543Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:281796..282087TCONS_00007024-exon-sc0000073-1491911889:281796..282087Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:281796..282087TCONS_00007024-exon-sc0000073-1510915933:281796..282087Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:281796..282087TCONS_00007024-exon-sc0000073-1575043694:281796..282087Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:282403..282564TCONS_00007024-exon-sc0000073-1491911889:282403..282564Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:282403..282564TCONS_00007024-exon-sc0000073-1510915933:282403..282564Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:282403..282564TCONS_00007024-exon-sc0000073-1575043694:282403..282564Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:283329..283977TCONS_00007024-exon-sc0000073-1491911889:283329..283977Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:283329..283977TCONS_00007024-exon-sc0000073-1510915933:283329..283977Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:283329..283977TCONS_00007024-exon-sc0000073-1575043694:283329..283977Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:284300..284526TCONS_00007024-exon-sc0000073-1491911889:284300..284526Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:284300..284526TCONS_00007024-exon-sc0000073-1510915933:284300..284526Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:284300..284526TCONS_00007024-exon-sc0000073-1575043694:284300..284526Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1491911889:286646..286803TCONS_00007024-exon-sc0000073-1491911889:286646..286803Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1510915933:286646..286803TCONS_00007024-exon-sc0000073-1510915933:286646..286803Clytia hemisphaericaexon
TCONS_00007024-exon-sc0000073-1575043694:286646..286803TCONS_00007024-exon-sc0000073-1575043694:286646..286803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:280374..286803 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0573223	0	0.457729	0.0557295	0	0	0	0	0	0	0	0	0	0	0.0162201	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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