TCONS_00007026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007026
Unique NameTCONS_00007026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007026 ID=TCONS_00007026|Name=TCONS_00007026|organism=Clytia hemisphaerica|type=transcript|length=2110bp
NAAACGTGACGGGCCCGTGTTATGCTGGTCATTATTGTTACGGAGCAGCT
AAAGAACCTTCGCCTTTCGAGCAAAACCCCGTGACCGGATGGACTTTCGA
TTTCCATAATGATCTCTGTCCCAAAGGATATTTCTGTACAAATGGTACTT
CCGTACCTGAGCCATGTCCGATGGGACGATATTCCGGACAGTCTGGGTTG
AAAGAAGAAAGTGAATGCCAATTATGTCCACCTGGAAAATTTTGTAGTGT
AAGTGGAGCCGAGGAGTTGAAGAACCCACCGAATTGTTCGGCTGGTTATG
TGTGTTTGGGTGGCGCTTTCACCGGAACACCAGCTGGTGGAACGACTGGA
TATATTTGTCCTAAAGGATTCTACTGTCCAGAAGGGAGCAATATCGAGTT
GAGTTGTGTGCCAGGAACATACCAAGCTAACCAAGGACAAGGTCAATGCA
CCGATTGTGATGTCGGTAAAATGTGTCCAGATTACAACATGACCGCACCT
ATCGATTGCAAGAAAGGTTACTACTGTCCCGGTGGTGTGGCTCAATCATG
TCCACCAGGTACTTTCAATAACCGATCCGGTCTCAGTGAAGAAGGAGCGT
GTAGTGACTGCACACCGGGTATGTACTGTCCTGGATACGGCAACCAACAA
CCGTTCGGTTTATGCGAGGAAGGATATTTCTGTCAAGGTGGCGCCTCATC
GAAAGTTCCAAACGCAAGCAATCCAAGATATCCACTCAACGGCCCGTGCC
CAACTGGACATTACTGCCCCGACGGTACTCCAACACCGGTCGATTGCCCT
CGAGGACGTTTCCGTAACATCACAGGTGCTCGAAACAGTCTTGATTGCTT
TGAATGCACACCAGGCTCTTATTGTGAAACACCAGGGCTGACTTCACCAA
CAGATCTCTGCTTAGAAGGATGGTACTGTCCAAGTAATCATTTGACCATG
GTTCCAACACCGGAAAATTTCACTTGTTTTGCCGGACACTATTGTCCGAA
TGGAACTGCATGGCCTATCGAATGTGATACAGGTACTTACCAACCAAGTC
GCGGTCGGGCTACATGTAGAGACTGTCCAGCAGGTTACTATTGTACAAGC
AAagtggaaaacctggaaaaatgTCCACCCAAACATTACTGTCCTGCAAG
AACGGAAATTCCCATCATTTGTCCGAATGGAACCTTTACCAATGATACGG
CTTATGGATTGGAGCGAGCGGAAGATTGCAGACCGTGCCCTTCAGGATCC
TACTGTAAATCAGGTTCTGTGGTGGGTGTTTGTGTAGCTGGATACTGGTG
TCAAGCAGGAAGTCCTTCTCCTTCACCCAACCTCACCACCAACGCTGTCA
CACAAGCAGGTCCCTGTCCACCAGGCTTTTACTGTCCACATCACACCATT
GAGCCTACACCTTGTCCGAATGCCACCTTCAAGAATTATTACGGTGGCAA
AGGGAACGTGGAAGATTGTTTACCCTGCCCCGCTGGCCAACAGTGTTTCG
AAGGTGATCCAAGAATTCACCCATGTCCTGTGGGTCATTATTGCGTCGAA
GGATATCGTCCACAACCTTGTCCTCGATTGACTTATCGAGACTTGTTTTG
GGGAAAGAATGAATCAGACTGCTTCGCTTGCCCAGCTGGTTTCTGGTGCA
ACAAAGAAGGCATGTCCAACTATACAACCAGTCCGTGCCCAGTTGGGAAA
TATTGTCCTGAAGGTCAAGAACCGGTATGGTGTCCAGCCGGACGCAGACG
TATCCTCCCGCAAGCGGCCACCCCCGAACAATGTGAACCATGTCCGGCAG
GCTTTTATTGTCCGTTTGGTTCGTCCAATTACAGCGGAATACCGTGCTCG
CCTGGTACTTATTGCAAGAATAATCTTACAGACGGTGCAGCCAGTGAGAA
ACAGTGTCCGGGAGGTTATTATTGTCCGGCGCAAACTGGCGACCCTTACA
TCTGTCCAGGTATGTAggcacagatctgtaaagcccgaagggctagattt
gcggcctttatcgaaaaaTGAAGCCTAGGTTTGTAAGGATTtgctaccaa
agtcacgtgactaaaatatgcaatttcaccggtttgagagatgtgaaata
gcgtttgccg
Run BLAST on NCBI

transcript from alignment at sc0000073:301662..305750+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007026 ID=TCONS_00007026|Name=TCONS_00007026|organism=Clytia hemisphaerica|type=transcript|length=4089bp|location=Sequence derived from alignment at sc0000073:301662..305750+ (Clytia hemisphaerica)
NAAACGTGACGGGCCCGTGTTATGCTGGTCATTATTGTTACGGAGCAGCT
AAAGAACCTTCGCCTTTCGAGCAAAACCCCGTGACCGGATGGACTTTCGA
TTTCCATAATGATCTCTGTCCCAAAGGATATTTCTGTACAAATGGTACTT
CCGTACCTGAGCCATGTCCGATGGGACGATATTCCGGACAGTCTGGGTTG
AAAGAAGAAAGTGAATGCCAATTATGTCCACCTGGAAAATTTTGTAGTGT
AAGTGGAGCCGAGGAGTTGAAGAACCCACCGAATTGTTCGGCTGGTTATG
TGTGTTTGGGTGGCGCTTTCACCGGAACACCAGCTGGTGGAACGACTGGA
TATATTTGTCCTAAAGGATTCTACTGTCCAGAAGGTCCGTCTAATTTTTT
AatatcattttgaatttttcttttactGCTTTATCTCCAGCTGAAAGTGA
AATCGTTCTTGGGACACATGTAATAATCTTTTTACATTAGTTGCTCTACT
CTTTGATGTGTTATTCTTCGGATGCTGGTAGAATATAAGTTTCAACTGCA
GTCGAGGGTGATCCGAAGGCTCCATTTTCCTTAGCAACTGTGTAACCGAA
GATAGGGGACAGCGCCACTTCTTTTCACGATTTCTCCACTTACTTTGGGT
CATTTTTTAGTTCTTAGCTCAGCTTAGCTATGACTCCGTAGCCACATACT
TTATCTTTGTGCGGCgctaaaatgaaatattgtaaaaatgAACCTGCTAA
AATGTGAACACTTTTATTTAATCAAGATGATACCTTTTTCTTTCATAGGG
AGCAATATCGAGTTGAGTTGTGTGCCAGGAACATACCAAGCTAACCAAGG
ACAAGGTCAATGCACCGATTGTGATGTCGGTAAAATGTGTCCAGATTACA
ACATGACCGCACCTATCGATTGCAAGAAAGGTTACTACTGTCCCGGTGGT
GTGGCTCAATCATGTCCACCAGGTACTTTCAATAACCGATCCGGTCTCAG
TGAAGAAGGAGCGTGTAGTGACTGCACACCGGGTATGTACTGTCCTGGAT
ACGGCAACCAACAACCGTTCGGTTTATGCGAGGAAGGATATTTCTGTCAA
GGTGGCGCCTCATCGAAAGTTCCAAACGCAAGCAATCCAAGATATCCACT
CAACGGCCCGTGCCCAACTGGACATTACTGCCCCGACGGTACTCCAACAC
CGGTCGATTGCCCTCGAGGACGTTTCCGTAACATCACAGGTGCTCGAAAC
AGTCTTGATTGCTTTGAATGCACACCAGGCTCTTATTGTGAAACACCAGG
GCTGACTTCACCAACAGATCTCTGCTTAGAAGGATGGTACTGTCCAAGTA
ATCATTTGACCATGGTTCCAACACCGGAAAATTTCACTTGTTTTGCCGGA
CACTATTGTCCGAATGGAACTGCATGGCCTATCGAATGTGATACAGGTAA
GGTAGAAAAAAGTTGGAGTATTTTTGCTTGTTTACAAGCCGAGTAATTTA
AAGTTGTCAGCGTCATGTTGTAGACCGGTAGACCCCCGTGTAAACAGTTG
AAAAGCTGCGTAAAATGCTAGATCACTGGGCTATTCAACTAAAATAGCGA
CTGTATCCCAAACTTGAACCTCATTATCACCGTTCGAATTTGGGTAGATA
GAACAGGCAGGCTTTACGGGAAACattgtgtttcttttttttttttggat
ttaggAATATTTCACATAAGTGTTTCATGGCTAACGTGAAAAGTGATGGT
TTTTCTTTTTACCCTTTGACTTTCAACTTCTTTTGCAGGTACTTACCAAC
CAAGTCGCGGTCGGGCTACATGTAGAGACTGTCCAGCAGGTTACTATTGT
ACAAGCAAagtggaaaacctggaaaaatgTCCACCCAAACATTACTGTCC
TGCAAGAACGGAAATTCCCATCATTTGTCCGAATGGAACCTTTACCAATG
ATACGGCTTATGGATTGGAGCGAGCGGAAGATTGCAGACCGTGCCCTTCA
GGATCCTACTGTAAATCAGGTAATGAAGAAATGTGATCACACCTGTATGT
TGAAGTTTACTTTAAAACCTTCTTGCTTAAATAACTCGCTTGAGTGGAGT
TNcacagatatctgtaaagcccgaagggctagataggcaactttaagctt
tctccagcaaaaaaaaagtgaagcaaaaatttgactttttNNNNNNNNNN
NNNNNNNagataggatctagcattttaattgttttcggagcgcgagataa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNcacatctctcaaaccggtgaaattgcatattttagtca
cgtgactctggtaggaaatccttccaaagatgagcttcactttttgacca
aGGCCGCAAATCTACCCCTTCGGGCTTTAGAGATCTGTGATCACACCTGT
ATGTTGAAGTTTACTTTAAAACCTTACTTGAATAACTCGCTTGAGTGGAG
TTTCTATGATCCCCACCCTGTCACTCAAGAGTTTGAATTACTTGAACTTA
TTGAAATTGTAAAACTACAATGTTTAGATTCTAGTATGCTAGGGAAAAAA
TGTGTAACAAAACGATCGAATCCGACAAACTTTTCACGTCCAAAAATCGT
AACTGGTTAAAAGCCAAATAAAGTATTTTATGTAGGGCTTAcggtttttg
aaaatatattctaaTTACGTATATGTCTTTGAATCTAACAGGTTCTGTGG
TGGGTGTTTGTGTAGCTGGATACTGGTGTCAAGCAGGAAGTCCTTCTCCT
TCACCCAACCTCACCACCAACGCTGTCACACAAGCAGGTCCCTGTCCACC
AGGCTTTTACTGTCCACATCACACCATTGAGCCTACACCTTGTCCGAATG
CCACCTTCAAGAATTATTACGGTGGCAAAGGGAACGTGGAAGATTGTTTA
CCCTGCCCCGCTGGCCAACAGTGTTTCGAAGGTAGGTGTCACTttctttg
ctttgtttttttatcttaaCAAAGGTCAATTAAGGTTTCTAACGGTCCTT
CAAATGACCTTAACCCCTTCCATGTTCTATAGAAAATTTTTCGCATCTTT
GCCAGCTTGGTTTTAAACTTGTTTTGAAAtcaggcacgacgcaacgggta
aAACAGGTGCGCCGTCGCCGTAtcagattttcacaaattttcctCTTCGC
cagtaaaatcgcttaagtttcctcattcgccgtacttggtttaaaaagct
tccgtcgtgcctgttAAAATCTCAAGGGACCATATGattagaaaatacaa
aaaacaaacttttttggaACCAATGGTGTTCCTTCTAGACtgattcaatt
gtattcaatttatattattttgtttgCTACAGGTGATCCAAGAATTCACC
CATGTCCTGTGGGTCATTATTGCGTCGAAGGATATCGTCCACAACCTTGT
CCTCGATTGACTTATCGAGACTTGTTTTGGGGAAAGAATGAATCAGACTG
CTTCGCTTGCCCAGCTGGTTTCTGGTGCAACAAAGAAGGCATGTCCAACT
ATACAACCAGTCCGTGCCCAGTTGGGAAATATTGTCCTGAAGGTCAAGAA
CCGGTATGGTGTCCAGCCGGACGCAGACGTATCCTCCCGCAAGCGGCCAC
CCCCGAACAATGTGAACCATGTCCGGCAGGCTTTTATTGTCCGTTTGGTT
CGTCCAATTACAGCGGAATACCGTGCTCGCCTGGTACTTATTGCAAGAAT
AATCTTACAGACGGTGCAGCCAGTGAGAAACAGTGTCCGGGAGGTTATTA
TTGTCCGGCGCAAACTGGCGACCCTTACATCTGTCCAGGTATGTAggcac
agatctgtaaagcccgaagggctagatttgcggcctttatcgaaaaaTGA
AGCCTAGGTTTGTAAGGATTtgctaccaaagtcacgtgactaaaatatgc
aatttcaccggtttgagagatgtgaaatagcgtttgccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003931XLOC_003931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007026-exon-sc0000073-1491911889:301662..302045TCONS_00007026-exon-sc0000073-1491911889:301662..302045Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1510915933:301662..302045TCONS_00007026-exon-sc0000073-1510915933:301662..302045Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1575043694:301662..302045TCONS_00007026-exon-sc0000073-1575043694:301662..302045Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1491911889:302460..303107TCONS_00007026-exon-sc0000073-1491911889:302460..303107Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1510915933:302460..303107TCONS_00007026-exon-sc0000073-1510915933:302460..303107Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1575043694:302460..303107TCONS_00007026-exon-sc0000073-1575043694:302460..303107Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1491911889:303450..303680TCONS_00007026-exon-sc0000073-1491911889:303450..303680Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1510915933:303450..303680TCONS_00007026-exon-sc0000073-1510915933:303450..303680Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1575043694:303450..303680TCONS_00007026-exon-sc0000073-1575043694:303450..303680Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1491911889:304503..304742TCONS_00007026-exon-sc0000073-1491911889:304503..304742Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1510915933:304503..304742TCONS_00007026-exon-sc0000073-1510915933:304503..304742Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1575043694:304503..304742TCONS_00007026-exon-sc0000073-1575043694:304503..304742Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1491911889:305144..305750TCONS_00007026-exon-sc0000073-1491911889:305144..305750Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1510915933:305144..305750TCONS_00007026-exon-sc0000073-1510915933:305144..305750Clytia hemisphaericaexon
TCONS_00007026-exon-sc0000073-1575043694:305144..305750TCONS_00007026-exon-sc0000073-1575043694:305144..305750Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:301662..305750 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97451	1.36563	2.463	2.48528	15.1052	7.77077	3.33694	4.29831	4.45038	2.97429	3.09154	5.37426	1.65507	1.64398	0.50735	1.0578	0.63483	0.591511	3.95906	5.31252	1.91319	1.73271	1.11515	1.48819	1.94213	1.62588	2.50329	1.90522	1.19967	1.16387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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