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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007029 ID=TCONS_00007029|Name=TCONS_00007029|organism=Clytia hemisphaerica|type=transcript|length=2746bp
GGACTTCAAAGAACAGTTGGATAGCGAGAAAGACAAGTTGAAGAGTGATG
CTACCATGATCTTGAAGGAGACCATCAATGTGGATAATTTGGTGCAATCT
TCCATGCCGGAACCGGATACACCTGCTGCTCCCGAACAACCTGTCGAAGA
gATGCCAGCATCTTTCTTGATGACTGCACCAATGTCCGACAATGAGCTGG
TCAACTTGTTGATGCAATCACCACTCTATCAAAAACTGCAAAACATAAGG
GACCGAATGAACGGAGTGGAGCCCAAAACATCTAAAGACCAAAAAGAAGA
AGATTCATACATCGATGAGAGGGATGACACTTTGTTCAGTAGTGATGAGA
AATTATCCCCAGTCGATCTGGATGAACTGAATGCTCGTGAATTTGTCATT
TACAAATTCTCATGTTTCATTCGTGACCTCCTAGGAGTACATTGCTTCCA
CAAGCCTGTACATATCCTACTTGCAGATAAACTACCACCTAACTCCACAC
TGTCACATAACGCGTACAGAAACTCATTTTACTACGATCCGAACAATCGT
CTGCTATACTTACGCCGTGATCGTTTGGAGAACGTTGGAGAATTCATCCT
GGTTTTAGTCCATACTTTATGCCACACCCATGTTGATGATATGCGCAGTG
ACTCTGATCCTAAATTCGTCAAGGAGTTCTACAAAGCATTAAGTGTGGTC
TGTTCGGACCTCTTTTTGTCGCGATACCGGCGTTCGAATGCCATGAACGA
GGCCTTTGTCAATTTCACGGACGACCAAAATATGTCGGTACAGGATGCCG
GTAAACGAGTTTTGGAAACGGTCTTTGGTGATACGCACGACGAAATGGAA
CGATCGAATGTTGTGAACGATCTTCTAGACACCAAACTTGTTCGCAATAA
ACATAACACAAGTCAAAAGTTCGATCGTGACGTCATGTTTAAACGGTTAA
GGAAATACACAGATTTCATTGTCAGTAATAAGTTACGTAATTNCAAACGG
TTGAGGAAATACACAGATTTCATCGTCAGTAATAAATTACGTAATTTCTT
GGGTGATGTTGAGGAAAAACTTACGGATACGAAAAACCAGGGAAGTGAAA
GTCAAGTcgatcaaagattgaaagagtTGAAATTCCAGGTCAAAGACCAG
CGTCCTGTATCCCGTTACGTACCCAGCAATAATCGTGAAATGTCGCGTGA
GATCGCCAAACAAAACACGCGTAATCTGGCGCTCGCCCGTTCACCGCTCG
CTCTCTCGTTCGTTCCACCGCGACCCACAACTTCGCGTCCGAAAACAGGA
CAGCGTCCGATGACGAGTGGTATtattgaaaatcaagaaaaagacTTTTA
TGAGACCTTCTTAGAAGCGCAAGTCGACGAACTTAAGGATAAAATTGATG
AATTAGATTTAGAGTTCACAACATTGACACGTCAATCATTAGAACTTTCT
acgcaagtgaaaaatttgGAGAGTGAAGTTGCAGGTTATGTGGACGCTGC
ACGGAACAGTTCAACTCCGTCCGAAATGGAAAGAATGTCCGAAATTGTTC
GCTCGTCCAACGATAAATTATCGTCCGCGCGTTCACAATTCACTCAAGCT
ATGATCGCCAAATCTGAAAGATTAAAACGATTAGAAGCTTACCGCAAAGA
ACTTGAAGAACGAGAAAATTTGTTGAGTCAACATCAGAAAATGCCAGCAG
CCGATCGTGAAGAAAGAGCAGACCGAAAATTAAAATCAGCAATggctaaa
acaaaataaactttTCTTAGAGGAatctttaatttattttttaattattt
tgtaaaatttttagataaaaaggGAGAAAGACTTATTATTGACANttttt
aattattttgtaaaaatttttagataaaaaggGAGAAAGACTTATTATTG
ACGATGAAAAACAGttaatttattttgtaaaattttttaacaatatcTTG
ATATGCACAATTATATGTAATTTTTAGTCACGTGGTGTACATAATGCTTA
AAATGTTGGACCAACAAATTATGGTCCATCTCATATTATACTTTTCctat
tttttgtaatatttgtGGGTTTTATGATATAGTGTGTGTAATGTTTGTTT
ATAcagaaaataacaaatttttgtattaaatATTAAGAATGTTTTTGATT
ATTAATCAGGGTCTACCACCATCAGCAGACCAACTTTTTAATTTAGTCTA
CGGCTGCAATAAAAATCACTGTTCAACATTTCATGATCGTCCTTATCTTG
AATACTCTTTTCCATTATTTTGGTAGCAATATTCATCGTGTCTTTGATTG
TCTCTTccgtgtattttttatttttatccatttCAATTGCAGATCTGACC
AATTCTCCTGCCATTTTTATCAGCGTTATCTCCTGTCTCTCTTTTGAATC
AGTAAAGTAAGCTAAATCATTTAAGAATCCGCCTTCAATTTGAGACTCCA
TTTGCTCCCCTCTCTTCTTTCCATAAAACTGAACGAAAATATTCTTAGCA
CCATTAAAACGTTTAATCGGCGTGAGTTTCTTTTCATTCCTATATTTTTt
gtcaatcaatgtttttcCAAAGCTTTCTAGAATATCGAGAGAACGTTTCG
CGAGGCTCCATTTTATTCTGTAATTCTCGCTTGCTTCCAACCATTCTGGT
TCGATCCCAGTCTCCATATCATTATCTTTGACGACTTTCGGTATCAGATC
CATATCCAATTCGTCAGGTTTCTAAAAAGTATGATGATAacaaaaa Run BLAST on NCBI protein sequence of TCONS_00007029-protein >TCONS_00007029-protein ID=TCONS_00007029-protein|Name=TCONS_00007029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
DFKEQLDSEKDKLKSDATMILKETINVDNLVQSSMPEPDTPAAPEQPVEE
MPASFLMTAPMSDNELVNLLMQSPLYQKLQNIRDRMNGVEPKTSKDQKEE
DSYIDERDDTLFSSDEKLSPVDLDELNAREFVIYKFSCFIRDLLGVHCFH
KPVHILLADKLPPNSTLSHNAYRNSFYYDPNNRLLYLRRDRLENVGEFIL
VLVHTLCHTHVDDMRSDSDPKFVKEFYKALSVVCSDLFLSRYRRSNAMNE
AFVNFTDDQNMSVQDAGKRVLETVFGDTHDEMERSNVVNDLLDTKLVRNK
HNTSQKFDRDVMFKRLRKYTDFIVSNKLRNXKRLRKYTDFIVSNKLRNFL
GDVEEKLTDTKNQGSESQVDQRLKELKFQVKDQRPVSRYVPSNNREMSRE
IAKQNTRNLALARSPLALSFVPPRPTTSRPKTGQRPMTSGIIENQEKDFY
ETFLEAQVDELKDKIDELDLEFTTLTRQSLELSTQVKNLESEVAGYVDAA
RNSSTPSEMERMSEIVRSSNDKLSSARSQFTQAMIAKSERLKRLEAYRKE
LEERENLLSQHQKMPAADREERADRKLKSAMAKTK Run BLAST on NCBI transcript from alignment at sc0000073:321534..324937+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007029 ID=TCONS_00007029|Name=TCONS_00007029|organism=Clytia hemisphaerica|type=transcript|length=3404bp|location=Sequence derived from alignment at sc0000073:321534..324937+ (Clytia hemisphaerica)
GGACTTCAAAGAACAGTTGGATAGCGAGAAAGACAAGTTGAAGAGTGATG
CTACCATGATCTTGAAGGAGACCATCAATGTGGATAATTTGGTGCAATCT
TCCATGCCGGAACCGGATACACCTGCTGCTCCCGAACAACCTGTCGAAGA
ggtatgtttttgttttgttgggtTATGTTCAATGTTTGACCTGTATAATT
TCATAGACTCAAAACTCTTTCTGATTACGAGTGTTTGAAATTATTATTGA
TTTTAAATATGCTTCAAGCTGCTGCATCTTGGTTGTGGTTAAATCAGCGA
TATCCAGACAAACTCTCTGCTACAATTTATCATTATTATAGTAATATTTT
ACATAGAGAacatttcttcaattttcctGATCCAAACCAATAACTCTTTC
CATTCCACAGATGCCAGCATCTTTCTTGATGACTGCACCAATGTCCGACA
ATGAGCTGGTCAACTTGTTGATGCAATCACCACTCTATCAAAAACTGCAA
AACATAAGGGACCGAATGAACGGAGTGGAGCCCAAAACATCTAAAGACCA
AAAAGAAGAAGGTGAAAATCGATTTTTAGACTACCTTTTGTCCAAAAACA
ACCCGGCTTATTAGACCATGGCTTTTTAAACGTCTTGTTTCAAGTTGCCc
agattttatttcattttcaaggaAGTCCTTGCAAGTAAAGCTGAGTTTCA
TTCTTGATTGTATCTTTCTTCTTTAGATTCATACATCGATGAGAGGGATG
ACACTTTGTTCAGTAGTGATGAGAAATTATCCCCAGTCGATCTGGATGAA
CTGAATGCTCGTGAATTTGTCATTTACAAATTCTCATGTTTCATTCGTGA
CCTCCTAGGAGTACATTGCTTCCACAAGCCTGTACATATCCTACTTGCAG
ATAAACTACCACCTAACTCCACACTGTCACATAACGCGTACAGAAACTCA
TTTTACTACGATCCGAACAATCGTCTGCTATACTTACGCCGTGATCGTTT
GGAGAACGTTGGAGAATTCATCCTGGTTTTAGTCCATACTTTATGCCACA
CCCATGTTGATGATATGCGCAGTGACTCTGATCCTAAATTCGTCAAGGAG
TTCTACAAAGCATTAAGTGTGGTCTGTTCGGACCTCTTTTTGTCGCGATA
CCGGCGTTCGAATGCCATGAACGAGGCCTTTGTCAATTTCACGGACGACC
AAAATATGTCGGTACAGGATGCCGGTAAACGAGTTTTGGAAACGGTCTTT
GGTGATACGCACGACGAAATGGAACGATCGAATGTTGTGAACGATCTTCT
AGACACCAAACTTGTTCGCAATAAACATAACACAAGTCAAAAGTTCGATC
GTGACGTCATGTTTAAACGGTTAAGGAAATACACAGATTTCATTGTCAGT
AATAAGTTACGTAATTNCAAACGGTTGAGGAAATACACAGATTTCATCGT
CAGTAATAAATTACGTAATTTCTTGGGTGATGTTGAGGAAAAACTTACGG
ATACGAAAAACCAGGGAAGTGAAAGTCAAGTcgatcaaagattgaaagag
tTGAAATTCCAGGTATGGATTGAtaatcacttttttttcttaCCTTGCTT
TCCCTCTGTATTTGTTGTATTCGAACGATTTTATGaaagatagattttga
aaagGTGCGAAAAATTGTTGATTATTCTTTCACCAATTTGTACAGCCAAT
TCCTTTACAAAATAGTATGgccattttaaactttttttctctgCTTCAAT
TAATACATCGATTTGTTCGTCACCTCATGTCATTTTTGTTTTCCAGGTCA
AAGACCAGCGTCCTGTATCCCGTTACGTACCCAGCAATAATCGTGAAATG
TCGCGTGAGATCGCCAAACAAAACACGCGTAATCTGGCGCTCGCCCGTTC
ACCGCTCGCTCTCTCGTTCGTTCCACCGCGACCCACAACTTCGCGTCCGA
AAACAGGACAGCGTCCGATGACGAGTGGTATtattgaaaatcaagaaaaa
gacTTTTATGAGACCTTCTTAGAAGCGCAAGTCGACGAACTTAAGGATAA
AATTGATGAATTAGATTTAGAGTTCACAACATTGACACGTCAATCATTAG
AACTTTCTacgcaagtgaaaaatttgGAGAGTGAAGTTGCAGGTTATGTG
GACGCTGCACGGAACAGTTCAACTCCGTCCGAAATGGAAAGAATGTCCGA
AATTGTTCGCTCGTCCAACGATAAATTATCGTCCGCGCGTTCACAATTCA
CTCAAGCTATGATCGCCAAATCTGAAAGATTAAAACGATTAGAAGCTTAC
CGCAAAGAACTTGAAGAACGAGAAAATTTGTTGAGTCAACATCAGAAAAT
GCCAGCAGCCGATCGTGAAGAAAGAGCAGACCGAAAATTAAAATCAGCAA
TggctaaaacaaaataaactttTCTTAGAGGAatctttaatttatttttt
aattattttgtaaaatttttagataaaaaggGAGAAAGACTTATTATTGA
CANtttttaattattttgtaaaaatttttagataaaaaggGAGAAAGACT
TATTATTGACGATGAAAAACAGttaatttattttgtaaaattttttaaca
atatcTTGATATGCACAATTATATGTAATTTTTAGTCACGTGGTGTACAT
AATGCTTAAAATGTTGGACCAACAAATTATGGTCCATCTCATATTATACT
TTTCctattttttgtaatatttgtGGGTTTTATGATATAGTGTGTGTAAT
GTTTGTTTATAcagaaaataacaaatttttgtattaaatATTAAGAATGT
TTTTGATTATTAATCAGGGTCTACCACCATCAGCAGACCAACTTTTTAAT
TTAGTCTACGGCTGCAATAAAAATCACTGTTCAACATTTCATGATCGTCC
TTATCTTGAATACTCTTTTCCATTATTTTGGTAGCAATATTCATCGTGTC
TTTGATTGTCTCTTccgtgtattttttatttttatccatttCAATTGCAG
ATCTGACCAATTCTCCTGCCATTTTTATCAGCGTTATCTCCTGTCTCTCT
TTTGAATCAGTAAAGTAAGCTAAATCATTTAAGAATCCGCCTTCAATTTG
AGACTCCATTTGCTCCCCTCTCTTCTTTCCATAAAACTGAACGAAAATAT
TCTTAGCACCATTAAAACGTTTAATCGGCGTGAGTTTCTTTTCATTCCTA
TATTTTTtgtcaatcaatgtttttcCAAAGCTTTCTAGAATATCGAGAGA
ACGTTTCGCGAGGCTCCATTTTATTCTGTAATTCTCGCTTGCTTCCAACC
ATTCTGGTTCGATCCCAGTCTCCATATCATTATCTTTGACGACTTTCGGT
ATCAGATCCATATCCAATTCGTCAGGTTTCTAAAAAGTATGATGATAaca
aaaa Coding sequence (CDS) from alignment at sc0000073:321534..324937+ >TCONS_00007029 ID=TCONS_00007029|Name=TCONS_00007029|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000073:321534..324937+ (Clytia hemisphaerica)
GACTTCAAAGAACAGTTGGATAGCGAGAAAGACAAGTTGAAGAGTGATGC
TACCATGATCTTGAAGGAGACCATCAATGTGGATAATTTGGTGCAATCTT
CCATGCCGGAACCGGATACACCTGCTGCTCCCGAACAACCTGTCGAAGAg
ATGCCAGCATCTTTCTTGATGACTGCACCAATGTCCGACAATGAGCTGGT
CAACTTGTTGATGCAATCACCACTCTATCAAAAACTGCAAAACATAAGGG
ACCGAATGAACGGAGTGGAGCCCAAAACATCTAAAGACCAAAAAGAAGAA
GATTCATACATCGATGAGAGGGATGACACTTTGTTCAGTAGTGATGAGAA
ATTATCCCCAGTCGATCTGGATGAACTGAATGCTCGTGAATTTGTCATTT
ACAAATTCTCATGTTTCATTCGTGACCTCCTAGGAGTACATTGCTTCCAC
AAGCCTGTACATATCCTACTTGCAGATAAACTACCACCTAACTCCACACT
GTCACATAACGCGTACAGAAACTCATTTTACTACGATCCGAACAATCGTC
TGCTATACTTACGCCGTGATCGTTTGGAGAACGTTGGAGAATTCATCCTG
GTTTTAGTCCATACTTTATGCCACACCCATGTTGATGATATGCGCAGTGA
CTCTGATCCTAAATTCGTCAAGGAGTTCTACAAAGCATTAAGTGTGGTCT
GTTCGGACCTCTTTTTGTCGCGATACCGGCGTTCGAATGCCATGAACGAG
GCCTTTGTCAATTTCACGGACGACCAAAATATGTCGGTACAGGATGCCGG
TAAACGAGTTTTGGAAACGGTCTTTGGTGATACGCACGACGAAATGGAAC
GATCGAATGTTGTGAACGATCTTCTAGACACCAAACTTGTTCGCAATAAA
CATAACACAAGTCAAAAGTTCGATCGTGACGTCATGTTTAAACGGTTAAG
GAAATACACAGATTTCATTGTCAGTAATAAGTTACGTAATTNCAAACGGT
TGAGGAAATACACAGATTTCATCGTCAGTAATAAATTACGTAATTTCTTG
GGTGATGTTGAGGAAAAACTTACGGATACGAAAAACCAGGGAAGTGAAAG
TCAAGTcgatcaaagattgaaagagtTGAAATTCCAGGTCAAAGACCAGC
GTCCTGTATCCCGTTACGTACCCAGCAATAATCGTGAAATGTCGCGTGAG
ATCGCCAAACAAAACACGCGTAATCTGGCGCTCGCCCGTTCACCGCTCGC
TCTCTCGTTCGTTCCACCGCGACCCACAACTTCGCGTCCGAAAACAGGAC
AGCGTCCGATGACGAGTGGTATtattgaaaatcaagaaaaagacTTTTAT
GAGACCTTCTTAGAAGCGCAAGTCGACGAACTTAAGGATAAAATTGATGA
ATTAGATTTAGAGTTCACAACATTGACACGTCAATCATTAGAACTTTCTa
cgcaagtgaaaaatttgGAGAGTGAAGTTGCAGGTTATGTGGACGCTGCA
CGGAACAGTTCAACTCCGTCCGAAATGGAAAGAATGTCCGAAATTGTTCG
CTCGTCCAACGATAAATTATCGTCCGCGCGTTCACAATTCACTCAAGCTA
TGATCGCCAAATCTGAAAGATTAAAACGATTAGAAGCTTACCGCAAAGAA
CTTGAAGAACGAGAAAATTTGTTGAGTCAACATCAGAAAATGCCAGCAGC
CGATCGTGAAGAAAGAGCAGACCGAAAATTAAAATCAGCAATggctaaaa
caaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007029-exon-sc0000073-1491911889:321534..321684 | TCONS_00007029-exon-sc0000073-1491911889:321534..321684 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1510915933:321534..321684 | TCONS_00007029-exon-sc0000073-1510915933:321534..321684 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1575043694:321534..321684 | TCONS_00007029-exon-sc0000073-1575043694:321534..321684 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1491911889:321944..322094 | TCONS_00007029-exon-sc0000073-1491911889:321944..322094 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1510915933:321944..322094 | TCONS_00007029-exon-sc0000073-1510915933:321944..322094 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1575043694:321944..322094 | TCONS_00007029-exon-sc0000073-1575043694:321944..322094 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1491911889:322260..323095 | TCONS_00007029-exon-sc0000073-1491911889:322260..323095 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1510915933:322260..323095 | TCONS_00007029-exon-sc0000073-1510915933:322260..323095 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1575043694:322260..323095 | TCONS_00007029-exon-sc0000073-1575043694:322260..323095 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1491911889:323330..324937 | TCONS_00007029-exon-sc0000073-1491911889:323330..324937 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1510915933:323330..324937 | TCONS_00007029-exon-sc0000073-1510915933:323330..324937 | Clytia hemisphaerica | exon |
| TCONS_00007029-exon-sc0000073-1575043694:323330..324937 | TCONS_00007029-exon-sc0000073-1575043694:323330..324937 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:321534..324937 + |
Blast
The following BLAST results are available for this feature:
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