TCONS_00007031 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007031
Unique Name	TCONS_00007031
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1050

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000073:334039..336576+

transcript sequence

>TCONS_00007031 ID=TCONS_00007031|Name=TCONS_00007031|organism=Clytia hemisphaerica|type=transcript|length=1050bp
TGACTATCGCTCTATATTCAATCGAGAAGGATTCGGCAATAAGGAATGGG
CAGCTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAATGTCAAGA
AATATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGACAAACAGT
ATGAAATCGGATGAAATGGACCACGAAGAAGTAGACGCAGGAGGAAAAGT
GAAATCAAAACTTGGAATAATTCTTCACGAACTTGACCGTGAAATCAAGA
AGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCGATGAAAGAGATG
CTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGATTGTGAGGCGGA
AGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGCAGTTCGTGAAGA
TTTATCGCAAGAGAGGACAAATATCAGAAAGTTGCGATGACGACCACGAT
TTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTCATCGTCGA
TTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGACCCGATTT
TCGGAGTTTTGTTCAATCCAACAGGAGGGCTTGTTGGACCAGGAGATCTA
CAATGGATGCATAATGCACTTTACGACGATTTGGGACCTTTCGCATATCA
CTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccatAATTCTG
GTCCTGGATATTGTTATTTGAACAAAGGAATCTTTGGTGATTGGAGTCCA
TTTGGTGGACAATTATCTGGCTTGAGGTACTGGAAACAGGTTTTAGCTGT
AGCGAAACCAGACGAAGCCAAGCTGGAGCGATTTGTCCTTAGATaaactt
ttataaaatattttgcagagGAAAGTttgataataaataataaacgTTGA
GCCTTGGATgggctttttgttttgaactgtttgtaaaaaatcttgaaGTT
TTTGTAAATTGGGGAATTCTGATATTTATATAATGTTGTAAATTACTGAT
GATTTAatatttctttgtatttttgctCACGTTTTAAACAGTATGTCAAT

Run BLAST on NCBI

transcript from alignment at sc0000073:334039..336576+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007031 ID=TCONS_00007031|Name=TCONS_00007031|organism=Clytia hemisphaerica|type=transcript|length=2538bp|location=Sequence derived from alignment at sc0000073:334039..336576+ (Clytia hemisphaerica)
TGACTATCGCTCTATATTCAATCGAGAAGGGTGTAAGCAAAAGCTTTAAA
TTGAACTTTTGTGATTTTTCGTGAAACACGTATACATATATCCTTTCAAA
ATGTTACTTATCTCTCAATTCAATCAATTACTCATATCACTTTAAAGTCA
CTTTCTTTTGAATTTCTATATAAATATTCAACCAGAATTATACGTTGATA
ATTCAAGTCAATAAAGAATTAGAcacgaaaatttcatatttcaattataC
GTTATGATATAACATACCCACAGAAAATTTgtgacttttgaaatttttct
ctcaaaaaggGAGTGCCTCGTATCCCTCGTATCTTTATAATGTTATGATT
TCTAATGCAGATGGAGCTCAGTGCAAAGAGTTGCAGCACGGGAAGGTTTT
GCCGAAGTTTCTCGAGCGTTTCATGATTATAGAAAAACCTGTTGCCATTG
ATAGATACCAATATATAAAATACATCTCATGGTTACTGTCGTaaattagc
gagtttatgttattataaattaaaaatttgagtggtgaaatgtcaaattt
ttcatcaaaagaaTCTTCTTCTTTTAGATTCGGCAATAAGGAATGGGCAG
CTGGCTTAGTTTTGAGAAAGACCATGAATCAGTGGAGAATGTCAAGAAAT
ATTGCGAATCGGTGGTTTTTGTGCGTTTCTATGGGCAGACAAACAGTATG
GTAAGAATATTGGAGTATTCAGTGACCTGAAAATATCTTACTTTGACAGG
GATGCCTGGAGTCTGCGTGACGCACGTTCCATCATAAAGGTTTTGGATGC
AAACTGTCGAAGGGAGTTTGCAGTCGATACTCTACCATTGCATCATGTTT
GCGATTTTGCGATTGCTGATATTATCGGCAGTAAATTCTTTTTCCGCGTT
CACTGTCATTAACAGACGATTAAATCCTTTATAACGATGATGAATATGAA
AGGTTACATTTTTAGAAATCGGATGAAATGGACCACGAAGAAGTAGACGC
AGGAGGAAAAGTGAAATCAAAACTTGGAATAATTCTTCACGAACTTGACC
GTGAAATCAAGAAGGCTCCAACAATTGCCGAATTTGAAATAACTGAACCG
ATGAAAGAGATGCTGAAGAAGTTGGCAGCTATTCGAGTTTGTACTGAAGA
TTGTGAGGCGGAAGAAGATTGCTTTAAAAGACTTTTGGAGGACGCTGAGC
AGTTCGTGAAGATTTATCGCAAGAGAGGACGTTAGTTTAAAAATAAGTCT
CAGAGTTATTCTAACTCTATATTTGCAATATATAAAACTTACTGATCAAG
AAAAACCTTTGTAGCTTTGACAAATaccttttttgaagattttgaaccAA
ATTTAAGATTATAAAATCACTAGAATAACTGAGTCGATTTAGTTGAAATT
TCGCCGCATTCATGAATGCTTTAATTTCGTTTTTCAGTcgtaaatgatga
aaaaaaaaatttcatcctaAAATAATTTATCAGGAAATTCCTTGAAACCT
TATGATGTTCGATATTTGTAGAAATATCAGAAAGTTGCGATGACGACCAC
GATTTTTATTGGGGAACACGTCAACAGATGTTGTTTGGCAAAGTCATCGT
CGATTGGTTGCCTGATCACATTGAAAATCAATCTCGACCGATGGACCCGA
TTTTCGGAGTTTTGTTCAATCCAACAGGAGGTAGAATTTCAACTATTTTT
CGTCAGCAGCTAGACTAAAGAAAAGTAGGCTATTCCAGAAAGAGATTGGT
ACCTCCTGTGTGTTGAGGGCACAGATTtgtaaaacccgaagggctagatg
tcgtgctttaagctcttccaagcaaaacaaaagtgaacatcgcaaaaaat
attactgctattgttttcgattATATCTGATtatatctttcttttcttca
tcCTCCAACTTTTTTTATCCAATAGATTTCCACTgctaaatatcttttca
aagaGCCCATAACCAATATCTAAGATTTTTTACTCAATTCTATCAAATCT
TACAGCCTTTCGTTTTGTTTACGCTTCAGATAAAAATGTGTTCGTATTTA
TTGATTATGTTATAGGGCTTGTTGGACCAGGAGATCTACAATGGATGCAT
AATGCACTTTACGACGATTTGGGACCTTTCGCATATCACTCAGCTGTTCA
TGATGCTTTCGGatatttgaaaacaaaccatAATTCTGGTCCTGGATATT
GTTATTTGAACAAAGGAATCTTTGGTGATTGGAGTCCATTTGGTGGACAA
TTATCTGGCTTGAGGTACTGGAAACAGGTTTTAGCTGTAGCGAAACCAGA
CGAAGCCAAGCTGGAGCGATTTGTCCTTAGATaaacttttataaaatatt
ttgcagagGAAAGTttgataataaataataaacgTTGAGCCTTGGATggg
ctttttgttttgaactgtttgtaaaaaatcttgaaGTTTTTGTAAATTGG
GGAATTCTGATATTTATATAATGTTGTAAATTACTGATGATTTAatattt
ctttgtatttttgctCACGTTTTAAACAGTATGTCAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003934	XLOC_003934	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000073	supercontig	sc0000073:334039..336576 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.02492e-07	0	0	4.80882e-07	1.31987e-06	1.49572e-07	0	0	0	3.30678e-07	0	0	0	0	0.0062674	4.23847	0	1.29749e-07	5.93739	10.7759	0.898834	1.24318	0.0385412	20.4284	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00007031 vs. Swiss-Prot (Human)

BLAST of TCONS_00007031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00007031 (transcript) - C. hemisphaerica