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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007044 ID=TCONS_00007044|Name=TCONS_00007044|organism=Clytia hemisphaerica|type=transcript|length=311bp
TGGAAGAGatgaaaaggaaatattttCTGCAAGAGTACGccgaagaagaa
aatcaacgaGAAAAAGAGATAGAGGTGGATATGGTGGTGGAATTCGTTGA
GAGAGAGCCAGAAGACATGCCCACGTTTTCTGGCTTTGGAAAGGAGACGC
ATGGCGAAGAGAAGGATGGAGAAGAGGAGAGTGAGGATAAAACAAACAAC
CAGAAAGAGAACACGCAAGAGGAGACCACCCCTGTCAACCGCCAGGTTGG
CCCATCGaaaggaaaaaaattgttctttccaGATCATTCGCCCCCTAAGT
TGAGAAAGGTA Run BLAST on NCBI transcript from alignment at sc0000073:493931..497365+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007044 ID=TCONS_00007044|Name=TCONS_00007044|organism=Clytia hemisphaerica|type=transcript|length=3435bp|location=Sequence derived from alignment at sc0000073:493931..497365+ (Clytia hemisphaerica)
TGGAAGAGatgaaaaggaaatattttgtaCGTACTGATCTGATGTATTAA
TGTAACGCGCAATGTAACAGACATTGTTCGACCGCAGTCGAGTAGAAAAT
TTCGCCATGGTTAAACTTCGCGGGTGGAGTTTTTCAGAACATGTTTCGAG
AAAAATATTGTCAAGAtttattgatttgttttgtttttttcccagatttt
tttctaaTTATTGTGTAACACCCACCATGTCTCGATCAAAATTACTTTCA
TAAGATGTTTTGATAGAATCTTCACAGCCAAAGTAGATTTTAAGGAAAAG
ATTCTTTCGATACTAGGATAAAGTCTCACATATTagcttttcagaatttt
ttttcgcggtttttttgcgaattttccaaaaatttacaTTTACACCATTC
AATTTTTATACCCCTTCAGACCGACATGAACGAAGTATTCAAAATCTTAA
GTATTCTAATTGAGAATAAATCAACAAAGAGGGGGCGAGAGGCCAACCTG
GCGGAAACAAAAAAAGTCATCGAGGCGAAGGTAATTTCTGAAGTTATTCA
ATTCGTTTTGATAAAGCTTTTTGTTGGCTGGGTAGACGATTTTTCTTCAG
AAGGCTACGTTCAACTAATAacatgaattttttgaaaaattggagatGCA
GGGTGATGCAGGAGATGCAGGGGTGACAATTCCCAAGGGGATCAGAAAGA
AAGCTATgctataatttaaatttttttataaaagaaaaacaaattatttt
ctctAAAGCTGCAAGAGTACGccgaagaagaaaatcaacgaGAAAAAGAG
ATAGAGGTGGATATGGTGGTGGAATTCGTTGAGAGAGAGCCAGAAGACAT
GCCCACGTTTTCTGGCTTTGGAAAGGTACCACAGATTACTTAACTTatta
ttctcaaattttcgTAGGAcagcttaaaggttttgttatCACATAAGTGT
TCAATTCCCGTTTCATACCAGGCACATATTTCGTATCAGGACAGCGTCTg
catattgttatattatgctgatataagcgaaGATTCTCCATCCTTGTGAA
AATGGGAAAGATTTTGTTAAATCTTTTCTTCTGAGAATGTGTTATGCATC
CGTGTGAGAATTGCCCGGGAATTGATAATTTAATTCATCAAATATTAATa
gaatctatatattaatatcCGTAGTATGTATGTCTGTTTCTGTTTTCgtt
ttctgtctgtgtgtcactttcgttttcgcaaacaatttctttgttctcga
gaagtttgttttgattgacagatcggatagagcttggtttagactttatt
cagctcgattcagcctttgttttgaatataaggcccgtctacatttagta
attttaatttctgcccagactTGCCCTTTTCTCttttatcttttgtttta
agtgttttcgaatgtatttaacgatcgtatttattataatggcattcgaa
ttcttttcaaaacaaaacaatttcgtttcatagaaaagaacatttcaaat
gtaaatcaaaacataaaaattaaagtcgaacaataacagcattcaaaggg
cgataaaaagcaagagaataaataaaaattagtcAATCTACTGTTAAAAA
TTGTGTATGTCaagtttaaattcgaaaagttatgacaagagTTGCAAAAT
TTGCAATATTCTTTGAGGCTTTTCCgctttttcctgaagaattgtcattt
ctacatttcactcctctttaccataatattttctcaaattgtcgaaaact
gAACGGCGTATTTAACGCGAGCAAAGCGAGAAAAATATCTCCGGgggagg
gttagagtcaaactttgaagatatatttttattcatttgatcgtttttta
aAACCAGCTTCAaaatccaaaggacttttagcgcgttcagctacagctta
accggcgtgcgacaccgggtaccggctagtttcgattaatacaataataa
ctcgtaaaaatataaatttcaaactttgatcgaggaaaattttgatagag
tgcactgcaagggtcttcttttagctggatcCTGGATACATTATAAGGGT
TTGTTTGGGGactgctacacgttttttttaagaaactagtttcaccaagc
agcctcaatgtttcttaagaaatcgaccttttgagcctcaaatgtttctt
aaatgtttctaaactttgtcaagcttaaaAGAAGCATATCGATAATACTC
TAACAATAATAACAGTCTAATAGACTAATCTAcagtactttcctatcttc
tatattgattttctgactttctcaagtgctTCTAACTGTTATGTttggtt
ctttaaaaaaaaaacgaattaaaaaatgtgattttctcattctcaacctc
agcatgtttcttagatgtttcttagtttttaggcattctgatcctcgtgt
ttcttaaaagtgtgtttcttaaaaaaaaaaaaacgtgtatctcaGGTTCA
TTTTTAGGTgacttcagcaaaataagatacaAAATCAAACTGAACTATAA
GGGTCAGAGACGTTTGATaattgatacaggggtgtacaAGAGAGCTGTGT
TTCAAGCTTAAGATCCAAGCGATTAGGATTATATCACGAACCACACAATC
TAGCTTCTGCTACAGGATGATTCGCTTTAAATATGCCTTCTATTTTGCTA
CTATGTAGGAGAGCGCAATAAGAGAAATTTTCTCGAGAGTAGTTTCAACG
TGCACGTTGGCAGCAAAAGAGTGCACGCATAGAGCGAACGGATTAGAGAG
GCCagcagcggtttgcgtgatggcgtgattagagatttttttggcgtgat
ggcgtgatcaagattttggcgtgatggcgtgatcaagattttggcatGAT
GCGTCATAGGGCAAAaattcgctattttttgcgcgatgacaaattttagc
gattttcgtgatgcatGATGGAGAATATTCTTTTGCGCGATGGCGTGATT
AGGCTGGGGGGCTTCATTAGAGTAGATTTCAATCatgtatttttgttcat
ttccaGGAGACGCATGGCGAAGAGAAGGATGGAGAAGAGGAGAGTGAGGA
TAAAACAAACAACCAGAAAGAGAACACGCAAGAGGAGACCACCCCTGTCA
ACCGCCAGGTACGTAGATTTATTATTTATCTAAGTAGATTGTCAACGTTT
GTAACCCTGCCCAAAACTAGGCCATTGAAATCAGCTGATCACGGAAGTTT
TCTTCATTACGATCAcgtaaaattgcaaaaaaactttaagGGCCATTAAG
TTAGATCATTTACCTCGAGTCCCACCCTCTGGGACCCCCCATCCAATCAG
gtcttaaaaaaattgaaaacatttctgGTAGCTTATAAACAGTTGATTGA
ATTGATGTATTTATTTTAGGTTGGCCCATCGaaaggaaaaaaattgttct
ttccaGATCATTCGCCCCCTAAGTTGAGAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007044-exon-sc0000073-1491911889:493931..493956 | TCONS_00007044-exon-sc0000073-1491911889:493931..493956 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1510915933:493931..493956 | TCONS_00007044-exon-sc0000073-1510915933:493931..493956 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1575043694:493931..493956 | TCONS_00007044-exon-sc0000073-1575043694:493931..493956 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1491911889:494689..494805 | TCONS_00007044-exon-sc0000073-1491911889:494689..494805 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1510915933:494689..494805 | TCONS_00007044-exon-sc0000073-1510915933:494689..494805 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1575043694:494689..494805 | TCONS_00007044-exon-sc0000073-1575043694:494689..494805 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1491911889:496937..497038 | TCONS_00007044-exon-sc0000073-1491911889:496937..497038 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1510915933:496937..497038 | TCONS_00007044-exon-sc0000073-1510915933:496937..497038 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1575043694:496937..497038 | TCONS_00007044-exon-sc0000073-1575043694:496937..497038 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1491911889:497300..497365 | TCONS_00007044-exon-sc0000073-1491911889:497300..497365 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1510915933:497300..497365 | TCONS_00007044-exon-sc0000073-1510915933:497300..497365 | Clytia hemisphaerica | exon |
| TCONS_00007044-exon-sc0000073-1575043694:497300..497365 | TCONS_00007044-exon-sc0000073-1575043694:497300..497365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:493931..497365 + |
Blast
The following BLAST results are available for this feature:
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