TCONS_00007066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007066
Unique NameTCONS_00007066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007066 ID=TCONS_00007066|Name=TCONS_00007066|organism=Clytia hemisphaerica|type=transcript|length=461bp
CCTGGTGGACAATAATGACCGGTGGGGCATATCCCGCTCGGCGCCGCCGC
ACCTTCCAAACAATATTGGCCTTTTGGGCATTCGGTACAGTCAGTCCATT
TATGAAGGTTTGTCAAGTTGGAGTAACTTCCTGCTGGACATGGGTGCTGT
TTCGGATGGCGGGTTCTTGGAAGACAGTAATAGCCTGCGGCACAAGGTTG
TGGTGGTTTCTGATTTCCTCCAGTTCCCGCTGAACATGCTTGACCTGCAG
GACATCCGTCACATTGGCTATCCGCTGTCAAATTATGGTAATCGGTATAT
GTTCCTGCCGGGCACGCATTCAATGGATCACTAGGTGATGACGAGCCTTC
AGGACAGTAATATCCTGCGCTGCACTGTTCCGTTGGTTGAGTAGATGCTG
ATAGCGGACATGCAAAGCCAGCTTCGCACGGACGACAATTTGAAGCCGCG
CCCTGCATCGG
Run BLAST on NCBI

transcript from alignment at sc0000073:265926..266756-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007066 ID=TCONS_00007066|Name=TCONS_00007066|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0000073:265926..266756- (Clytia hemisphaerica)
CCTGGTGGACAATAATGACCGGTGGGGCATATCCCGCTCGGCGCCGCCGC
ACCTTCCAAACAATATTGGCCTTTTGGGCATTCGGTACAGTCAGTCCATT
TATGAAGGTTTGTCAAGTTGGAGTAACTTCCTGCTGGACATGGGTGCTGT
TTCGGATGGCGGGTTCTTGGAAGACAGTAATAGCCTGGTGAAAAAAAAGA
TACAGGGTAGAAAAGCTAACAAAGAATATCTCGGACAACATTGTACTATG
TTTAGACTGGAGTCGTTTATAATCGTGTAATACAATAATATGGGTGTTAT
ATGATATCACGGTAATTTATACGGTATAGTATCAGTTTGCATGCTAAAAT
ATTCTAATATGTCTGATATAGTCGTCTAGCATGCTAAACTTTGCAGTGTT
CTTTTCACAAAAACAAAACCATTTTTTCAACAACAACAAAAAACCAACAA
TAAAAGTGCAACTTAAAGAATTGTCTGAAAAGATGGAACCGTTCCTACAT
TATTGAATTTTCACTCTTCAAACAAACCGGTAGCGAATGTGAATGAAAAC
TTACCAGCGGCACAAGGTTGTGGTGGTTTCTGATTTCCTCCAGTTCCCGC
TGAACATGCTTGACCTGCAGGACATCCGTCACATTGGCTATCCGCTGTCA
AATTATGGTAATCGGTATATGTTCCTGCCGGGCACGCATTCAATGGATCA
CTAGGTGATGACGAGCCTTCAGGACAGTAATATCCTGCGCTGCACTGTTC
CGTTGGTTGAGTAGATGCTGATAGCGGACATGCAAAGCCAGCTTCGCACG
GACGACAATTTGAAGCCGCGCCCTGCATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003952XLOC_003952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007066-exon-sc0000073-1575043694:266570..266756TCONS_00007066-exon-sc0000073-1575043694:266570..266756Clytia hemisphaericaexon
TCONS_00007066-exon-sc0000073-1575043694:265926..266199TCONS_00007066-exon-sc0000073-1575043694:265926..266199Clytia hemisphaericaexon
TCONS_00007066-exon-sc0000073-1510915933:266570..266756TCONS_00007066-exon-sc0000073-1510915933:266570..266756Clytia hemisphaericaexon
TCONS_00007066-exon-sc0000073-1510915933:265926..266199TCONS_00007066-exon-sc0000073-1510915933:265926..266199Clytia hemisphaericaexon
TCONS_00007066-exon-sc0000073-1491911889:266570..266756TCONS_00007066-exon-sc0000073-1491911889:266570..266756Clytia hemisphaericaexon
TCONS_00007066-exon-sc0000073-1491911889:265926..266199TCONS_00007066-exon-sc0000073-1491911889:265926..266199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:265926..266756 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.211924	0	0	12.5895	5.87095	0.60511	0.832569	2.09402	0.433243	1.07091	2.21585	1.61178	0.809645	0.0253314	0.336882	0.13644	0.318517	1.06299	3.30944	2.53095	0.556588	0	0.994615	0.308369	2.03807	0.443657	0	0	0.209489
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR009030Growth_fac_rcpt_
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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