Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007078 ID=TCONS_00007078|Name=TCONS_00007078|organism=Clytia hemisphaerica|type=transcript|length=2294bpRun BLAST on NCBI protein sequence of TCONS_00007078-protein >TCONS_00007078-protein ID=TCONS_00007078-protein|Name=TCONS_00007078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MWTETSWLYRVFSSLSVLLMTLDFNFNFIEGNASADVDHHLEMGKRLLAARun BLAST on NCBI transcript from alignment at sc0000073:473799..486167- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007078 ID=TCONS_00007078|Name=TCONS_00007078|organism=Clytia hemisphaerica|type=transcript|length=12369bp|location=Sequence derived from alignment at sc0000073:473799..486167- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:473799..486167- >TCONS_00007078 ID=TCONS_00007078|Name=TCONS_00007078|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0000073:473799..486167- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007078 vs. Swiss-Prot (Human)
Match: DNJC3 (DnaJ homolog subfamily C member 3 OS=Homo sapiens GN=DNAJC3 PE=1 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 2.258e-125 Identity = 235/472 (49.79%), Postives = 324/472 (68.64%), Query Frame = 3 Query: 258 MWTETSWLYRVFSSLSVLLMTLDFNFNFIEGNASADVDHHLEMGKRLLAAGQLTEALSHYHSAIEGDPENYMTYFKRATVLLALGRSKTALKDLTKVVELRHDFIRARVQRANIYLKQGNLDEAVVDYEYVIENSPDDNESVE------KKELVEQLRMDVASAQEYFDEHRYQETIDLLQRPLEHSPWSVSLREMRAECFQHTGQYFKAIQDLKPTTKLVNDNTEAYLKVSHLYYALGESEESLKEIRECLKLDQDHKACXXXXXXXXXXXXXFTDAQKYMDREQFSDAIFKLNAALKHEKENIRFIANAKEKLCTSQYKLGDSKEAIKACTEAIELSPQSAHVYCDRAEAYLLEDNFDEALKDFQEAKTINNDHQRAKEGIDRVNKLIKQSKKRDYYKILGVKRNAAKPEILKKFRKLAAKWHXXXXXXXXXXXXXXXXXXXXXXXXXVLTDPEKRQKYDMGEDPLDPES 1655 M S R+ S LL+ +D + E +ADV+ HLE+GK+LLAAGQL +ALS +H+A++GDP+NY+ Y++RATV LA+G+SK AL DLTKV++L+ DF AR+QR ++ LKQG LDEA D++ V++++P +NE E K + +++LR +A F Y I L + LE W LRE+RAECF G+ KAI DLK +KL NDNTEA+ K+S LYY LG+ E SL E+RECLKLDQDHK C HYK+VKKL KL A++ + +++DA K + +K E + +KE++C K EAI+ C+E +++ P + + DRAEAYL+E+ +DEA++D++ A+ N + Q+ +EG+++ +L+KQS+KRDYYKILGVKRNA K EI+K +RKLA +WHPD F +EEKKKAEKKFIDIAAAKEVL+DPE R+K+D GEDPLD ES Sbjct: 1 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA---FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAES 469 The following BLAST results are available for this feature:
BLAST of TCONS_00007078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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