TCONS_00007092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007092
Unique NameTCONS_00007092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007092 ID=TCONS_00007092|Name=TCONS_00007092|organism=Clytia hemisphaerica|type=transcript|length=4397bp
GCGAATACATAAAGATATAGAAGAGGACATTACTAAAAAAATTCAATAAA
ATAATAACAAACCAATAGGACAATGGCAGACCCACCACCTCCTGCATACG
ATGAAGCAACCACTCAACCAAATGCTCCTCCCCCACAAGGGGTTGTCCCT
TATCCCCAGCCTGGCGCTCAGTACCCTCCACCTGCAAGCTACCCACCACC
AGGTGGTCAATACCCACCACCAGGAGCTCAATACCCTCCACAGGGTGCTC
AATACCCACCACCAGGAGCTCAATACCCACCACCAGGAGCTCAATACCCT
CCTCCAGGAGGCCAGTACCCACCACCAGCTGCACAATACCCACCTGCAGG
AGCCCAGTATCCTCCTCCCGGACAATACCCACCACCAGGACAGTATCCAC
CTCCTGGAGCTTATCCACCACCAACTCAAGTTGAGATGGTTGCCTTAAAT
ACAGGCGGTAACCCTGCACTAACAACGGAAGGGCCTCCTACTTACAATGC
GATTGAAGGAGGAACGACAGGAGAGGCGAAAGTAACAGAAACAACAGCTG
CAGCAGAGGACTCGTCAGATAGCGAGACATctgTGTTTGGTGCCTTCATT
GGGATGTTGGTTTTCGCAGCAATCCCGTGTGCTATGATTTACTTAGGATA
CACGCACCTTGGAGGATGTCCTGTACGAGAAAACGTTCCCTTGTTTTGTT
TGCTCAGTGGTGTTTTAGCATTGGTGGCGTTCGTTAGTTTCTTCTTTGTG
ATGTTATGTGATGACGACTCAAGTTGCTCCAACTTCTGGCTCGGCTGTTT
CGGCCTCTTCATTGTGGCCCATTTTGGGGTCCAGTGTTGGGGCAGTTATT
TGGTGTTCCGCTATTGGCCAACATGGAATGCATATGAAGAATTTATCGTG
GTGAACGATTTATGTGATAAAGACACTTACTTGATGTCTTTCTCCACACT
AATCATCTATTGGATCCTCACACCTTGTCTTTACTCCATTGGAAAAGCAG
GCTAAAAAGAAAACGGAGGAATTACGTAATTATGGTATAAATAATAAAAC
ATCTTTGTGTACTTGCTGTTCTTCAATATGAAAGAATGGAACAAAAAAAA
CGAACAGACCATTGAAATTGTTTAAAGCATGATcgagctcttccagaaaa
aaagtcGTTTATAGGGGGTGGAAGACATTTTCTCCAGGGGTAATGGAAAG
ATTGTGAAAAACCGCCATTTCCAGGGTCAAAACACGTGGCAAGGGATGGT
GGGGAATGGCTAAAAATTGAAGTGTTCAGGCGCATATCATTAAAACAATA
TTATAATATTCTTCACCCCATTAacagattttttctggaatattcTATGA
GCTTCATATCATTATTATCAATTTGTACAATATTGTAGCTTTTGTACAAA
TGATGGTCAGAACAAAACATATTTATTATAAGAAGGtgacccagccggca
cacaacgtcaaaacaacatcCAATTGACATTCATAacatccaaataacgt
tatttgaacgttaaaacaacgttgttgCCAGCTGGTGAGTAAAGTAATCA
ATTACTAATACTAACGTTCTTATAAATTAACCTACTCGCATAATTGACCC
AGATGGCTTGTGGTATAGATTAGCTTCTCATTCGGAATAAAAGctatatt
gggcttttccagaaaaaaatttgaatatggaaggggggtggaggatataa
cattttttgaaaatttacaccCCGGACACTGTGAATTTTGACTCCCTGGA
CAGCAGGTCTAaacccccccggacaagcattagttggccgaatatcaaaa
ttaccttcaaacagagcaaaattaccctcaaaccaGCTCAAACAGCAAGT
TTACCCCTTTGACAagacaaattttgtagatttttcactacccccggaca
ctatatcctccaccccccccccccccNGGGGttgaggatataacattttt
tgaaaatttacaccCCGGACACTGTGAATTTTGACTCCCTGGACAGCAGG
TCTAaacccccccggacaagcattagttgGCCGAATATCAAagttaccct
caaacagagcaaaattaccctcaaacagcaTTTTTACCCCTCTGACAaga
caaattttgtagatttttcactaccccaggacactatatcctccaccccc
catgtacggacattttctggaagagcccattatcaGAAAGCATAAGAAAA
TAGTTTATGcattttctttttagtttaaaacatttaaaacattcTGACGA
TTTTTCGTACATATCTTGTTGGAGTCGATTCCTAATCTCTtagaaattgt
atattttttgattttttctataaattggtgaaaattttaTAGATATTTTT
GTAGCTCGAGAAAAATAGTAATTATTTCTCAGTTAATCTTTGTATTGTTT
AACCTTatagaggccccccagcggtaactctgatcacgatatcacgcatt
ttttggtcttcaatcacgatcacgcaaatcagcaaaaaaaaaaaatggac
aatcacgcatccctttgaaaaagttcaaattacgtatactcaaaaatctt
tcaaataacGATCAAgttttgacctctcatcacgcaatcacgaagaaaaa
atttccaaatcacataatcacgctgcaaaaaaagtccctatcacgtcatc
acgaaaaccgcttgggggCCTCCTTATATATGTCAAAATTTGGGTGTTAG
ATAAGCAGCAATTCTCAAAAGTCAAAGATCAAAGCTAAGATACAAAATCA
TCATATTTCATATGAAAAATTACTACAAAACTATACTGTTTACTTAAATA
AAgtgcaaaataaaaaacaaaaacaaataattagaaataaatatttcaac
aaAACACTTATCACCTCTTCAAGTGAAAATGTAAAGAAGagccaaataaa
aaagacaattcTATCCAAATAATTTAAACCTAACTTAATAAATAAAAACG
AATCATGTTTCTAAACAAAGATTGGAAATAAATTCAATAGGTGTTATAAA
TTAGCTGAACGATGGATTtatcaaaatgataaaaaattgtcTATACAAAA
TCATCATATTTCATATGAAAAATTACTACAAAACTATACTGTTTACTTAA
ATAAAgtgcaaaataaaaaacaaaaacaaataattagaaataaatatttc
aacaaAACACTTATCACCTCTTCAAGTGAAAATGTAAAGAAGagccaaat
aaaaaagacaattcTATCCAAATAATTTAAACCTAACTTAATAAATAAAA
ACGAATCATGTTTCTAAACAAAGACTTTGGAAAAATTTATCAGTTCATAA
AGAGTCAGGGCTCTAAacaacggtcggacatcggacattgtccgacccaa
atagcttcatgtccgacccaaaaatcataattttcaagctaaagcaaccc
tgatcggacattttgtccgacccacttgaaatcgttatttcgagccttga
aAGAGGAACATTATAAGAGTTTATGCCTCCTCAAACTGAGCAGATATTTT
ATTCATACTGTACGctattattttatatttatcttGATGAAAAATCACTC
AATGTCCTCAAATCTGATCATATTAAAAGTTCTATATCAATCTCAGCCAT
ACTGTTTCGCGTCAGCATTCGGCTATTGCCAAGGCAAATGCCGACGAAAA
TTTAGCTTTTGCTAACGTAAAAGTGCTTAttgtaataaaattttaaaatt
ttttgtcgACCCAAATAACTCTGAATTAGAAAGGCTGCAATTTTATATCC
TGAACTGATCttcataaaaatgataatttaatgaaaataaaggtatCCAC
AGTGCAATGCAAACTGTCCAGATTTCAAAACagaattatttaatttttga
ttccATTTTCTTGTCCATTGTGAAGTGCATCCTCATCAAAGGACATAGGT
AGCAAGTGTGACAAGGTTGTTTCTTTAGTATCTCTATCTAAATTAaccaa
aattatatcaatattTCCAAACTCTGCCATAAATTGTCGACAGGCTCCAC
AAGGAGAAACCATACTGCCATTTTTAACATCTGTCGCAATAGCAATAGCT
TTAAATTTTGTGATACCTTCACTAATAGCCTTGCAATATGCAGTTCTTTC
TGCACATATTGTTAACCCAAAACTAACATTCTCAACATTACATCCTGTGA
TTGTTTTACCACATTGTGATAAAAGCGCACATCCAACTCGAAAATTACTA
TATTTTGCATAAGCAAAATCTTTAGCTGAAATACTTGCTTCAATTAAAgc
atttttatctgtttctCCGAGTGTcatcttgttgttttttaataTCAAAc
taaagaaatgaaataaaacatCGATATGAAATATCATCTTTCATTCTTAG
TAGGATACatgcgttttttataagaatagtgtttttcTGGCTGAGGG
Run BLAST on NCBI

protein sequence of TCONS_00007092-protein

>TCONS_00007092-protein ID=TCONS_00007092-protein|Name=TCONS_00007092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MADPPPPAYDEATTQPNAPPPQGVVPYPQPGAQYPPPASYPPPGGQYPPP
GAQYPPQGAQYPPPGAQYPPPGAQYPPPGGQYPPPAAQYPPAGAQYPPPG
QYPPPGQYPPPGAYPPPTQVEMVALNTGGNPALTTEGPPTYNAIEGGTTG
EAKVTETTAAAEDSSDSETSVFGAFIGMLVFAAIPCAMIYLGYTHLGGCP
VRENVPLFCLLSGVLALVAFVSFFFVMLCDDDSSCSNFWLGCFGLFIVAH
FGVQCWGSYLVFRYWPTWNAYEEFIVVNDLCDKDTYLMSFSTLIIYWILT
PCLYSIGKAG
Run BLAST on NCBI

transcript from alignment at sc0000073:646087..655423-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007092 ID=TCONS_00007092|Name=TCONS_00007092|organism=Clytia hemisphaerica|type=transcript|length=9337bp|location=Sequence derived from alignment at sc0000073:646087..655423- (Clytia hemisphaerica)
GCGAATACATAAAGATATAGAAGAGGACATTACTAAAAAAATTCAGTGAG
TCAATTTTCAAACACGATTTGAATGTTGGACCTTTTTTTTTTATTATAGG
AGTATATTTCGCAGGTCTATTGACCTCTATGAAACAATCTAATTCAAATT
TACAGTTCATCAATAACGGTCTTTTTACATATTTTCTTAAAGTAGAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCGTGAAGCATTTATTGGCG
GTACAGGATCCATATTTTTCAGCATTTTCAGTGGATTTTTCATCGATTGT
TGCCATTCTTTTTCATTCATTTGCAAGAGCGTGGCCGTCTTAGAAGCGGT
TTTAGAATGGTAATCATAAGTGTTTTAAAAATGGCGTTTACATGTGTATG
ATAGAAATTTGGTCAAAATTTTGCCTGAACGTTTGGTGCAAGGGTTATAG
ATACCAGTGTGTTGTTACTACAGTTTGACGCTTTCTAATTCGACCATTAT
TTGAGGGTAGTCAGGGTTAACAAGAAACTTTCATAAACGACACTCTATCA
TTCGATACGCTCCCTTATTCGATGAAAATTCAATTCACCTTGAAAATCGA
ATTAGAGAGGGTCAACTGTAGTTCTCAAAGCATACCTTATCGGGGAAAAC
TTCGTCGGGGAAAATTTTCGTCGGGGAAAAATATTCGTCACTTGGCCAAA
ATTTCGTCTCTTTTCCCCGACGAAGTTTCCCCCGATAAGGTACCATGGTG
TAACCAAATGTCCATAGAGAACTTCAATAAAAGGCGATGAGATGTCTGGT
AATAATTGTCGACAAAAGAAAAACTGCTGCTGCAATGAGATTTTTTCTCT
ATAATGTGTTCTCGCTTTATATTCTGTGGTTATTTAATACGCTGATTTAA
GATAAGAATTTGATCGGTTCACTTTATAATGAAATTTTTTTTTTTCCAGT
GTAATCTGTCAAGAGAGTTTGTAAGTAGAGAGAGTTGACAAGTAATTAGG
AGTGGCTTTTTTTAGAAACGATTTTTTCTGTAGTAGGTTCTACTAATAAG
AGCAAAGTTATGTGGCAAAAGTTATGGATGGTATTAGGTATAAAAAAATA
AAAGGGGTGTGCTTGGTGACTGCTTCATTGCAAGTCTGACGGTAGAAATC
TTATGTATCTTTATAGTTTTAACTCGCACCCATATTGATTTATTTTGCAC
ATTGTCGACATCTGAGGCTCATTTTCAAGTGGCTTCAGCAAAATAAGATA
TGAAATTAAATTTACATTGTAAGGGTCAGAAACGCTCGGTAAAATGCACT
GTGAGGCTACCTTTTCACTGCACAAAAGCTGCACTGTAATGGTCCGATTT
ATAAAGCCATTTTTTTCGGCGGCACATGTCGTCGTGCCCCCCCCCCCCCG
GCCCCAAACCCCCCCCCCCCNTGCACTGTAATGGTCCGATTTATAAAGCC
ATTTTTTTCGGCGGCACATGTCGTCGTGCCCCCCCCCCGGGCTACAACTG
CATCAGCACTGTTAACAAAATACAGGATAATGATATTTTGTAGCTTTTCA
TAAGAAAGAAACCTAAAAGTTTTCATTTTCTTTGTAGCTTTAATTTATTA
CCCAACACCATTTTAACCAAATTTCGTTCGACCCACCAAACTACGGTACA
GTATGCACGTAAGACTTTTTTCTAGTTTCTGCAGGTCATATTTTCCATTT
TTGTATCTTTTGTGTTCCAGTTAATTCTATTTGCGGTTGGTTCACAATGT
CACTTTCCATGATGTCTGTTTTCAGATTTAAATAACAACTTTGAGAGATT
GGTGATGGTCAAGACTAACAGCGAAAAATGTCTGAAAAATGTCACTCTCT
TTTCTCTTTGAGAATTCCAACTCTTTCTACCGGTTGTACTTATTAGGGGA
TATAACTTTTGCAATAAATAAGCTGGTATATAATACGAAATTTTTTTATT
GCGAGCAGAAATTCCTTCCATAGCAAATTATAAAAAATTATATCGGGCAA
GTAATAATCTTTTCAACCGATTTTTTGACGTCAAGTATGAGAAAGATGTT
ACAAGAGGTAGAAGTGACATTAAAATGTATTGAGCATCGATCTTCATTCT
TCATTTAAAAGATTCAAAGGCTTCAAATTTTAATTTTCTAACTATTTAGA
TAAAATAATAACAAACCAATAGGACAATGGCAGACCCACCACCTCCTGCA
TACGATGAAGCAACCACTCAACCAAATGCTCCTCCCCCACAAGGGGTTGT
CCCTTATCCCCAGCCTGGCGCTCAGTACCCTCCACCTGCAAGCTACCCAC
CACCAGGTGGTCAATACCCACCACCAGGAGCTCAATACCCTCCACAGGGT
GCTCAATACCCACCACCAGGAGCTCAATACCCACCACCAGGAGCTCAATA
CCCTCCTCCAGGAGGCCAGTACCCACCACCAGCTGCACAATACCCACCTG
CAGGAGCCCAGTATCCTCCTCCCGGACAATACCCACCACCAGGACAGTAT
CCACCTCCTGGAGCTTATCCACCACCAACTCAAGTTGAGATGGTTGCCTT
AAATACAGGCGGTAACCCTGCACTAACAACGGAAGGGCCTCCTACTTACA
ATGCGATTGAAGGAGGAACGACAGGAGAGGCGAAAGTAACAGAAACAACA
GCTGCAGCAGAGGACTCGTCAGATAGCGAGACATGTAAGTCATTTTTTCT
TCTGTTTTTCAAGAGTAACTTAAAGGAAGAAATTTTGGCGGGAATTTAAT
TTGGCGGATGGCCGAAAAAGTTTTTTCAGAGGGAATTTAATTTGGCGGAT
AGCTGGATAAAGTAATTTTGACGGGAATTTAATTTGGCGGTTGCAGGATA
TTTTTTACCAAAAGCGTTATCAAATAAGCAAAAAAACCTGTTTTAAGGTT
TGAAATAGCACAAATTTGGGGAATGCGTGAAATAAATTAAATTTGGCGGG
AATTTAATTTGGCGGATGGAGGAAAAAATAAATTTTGGCGGGAATTTAAT
TTGGCGGATGGAGGAAAAAATAAATTTTGGCGGGAACTTAATTTGGCGGA
TTTTGGCGAAATCCGCCAAATCCGCCAAATTTTCTTTCCGCCAAAATTTC
TTCCTTTAAGGTAGAAATTTTTGGTTGCTGTAAAATATTGTGAACACTCA
AAGATGATATAATTGTAACAGCTGCTGAGAAAAGATTAACGGTATAAAAC
TTTCTACAAATTATTTGTACATTAATATCGAGTGAGAATCATTTTAGTAG
TACGATAAACATTCTAAAGCTTCATTAAGAAATTGACTCTCGAATTTTCA
ATATAAGTTAATTTTCATCAGTAAGGAATATCTGTCAAGACTTACATTTA
ATTAAGTCGCGTTTTCGATTCTAATATTCGACATCTACAGCACTATATCC
TAAGAAAAAGAAAAATGCCATTTAGTTACCAAGAAAATCGATTTTTTTTA
TAAAATGTTGTTTTTATTTTTTCAGCTGTGTTTGGTGCCTTCATTGGGAT
GTTGGTTTTCGCAGCAATCCCGTGTGCTATGATTTACTTAGGTAACAAAT
ATTTTGTTTATTATAGACAGCTCTTTCAGGAACAAAGCTCATCTTCCACA
AAATGTAATACTAGATATAGTATCATCTCAAAAATATCTCCCTAACATGA
GCATAAGATGCATCTCTAACATTTCTCTTACTTTTGAAAAAAAAGAAATA
AAGTATTTTTGACTTAGGCAGACCCAAACTCTCTTTTGGATTAAAATGCT
AACAACCAACTCTTCGTAAGAACAGGTCGGATAAAGTCAAATGCTCATGG
TAACTGCAAACTCGGCTCACAGATTGCTTTTGCCATCATTTGGCCTCATT
CCATCCGACAAAACTAGAATCCAATCCTATTGTGGTGTTAGGGTTGAATT
GAAAGCTGTACACGTTTTTTTATAAGAACATCCAAAATAGTAGAATCCTT
CTGATGTTTTTAACTTTTTGAGATTTAAGCCTTAAAAATGCTGTTATTTC
CACCATTTTGTGGGTATTTTTGTCCGTTTTCCCAAAAGAAATTGGGTGTT
TTAGAGTCCTCAAAGCCTTAAAATGTTCTTAACTTGTTCTTAACATTTTG
GCCATTGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAACGTGAA
TATAAATGCTCAGTACAAACCCTATCTACCCTTGAAATGCGCAAGGACTG
GGTTAGAGTTTGGGTATGATTGATGTCAAATGTCTGAAATCGTTGACGTC
AAAATGTTCTGGTAAATAAACGCTTTAAGGGTTGTTATTGGACCATCTTC
GCATGTAACAGAATGAAGCCATTCTATTGGTTAGAAGTGACTAGTCACTA
GTAGAATGGCTTACGGAACCGAAGTGTGTGAACGTGGTCTTAGTCTTAAC
CGCAGACATCTTATAAAACACTAGATAGAGCTACACAGTCCCCATTTGAT
TCAAAATTATCCGCCATCTCTGATAAGTAGACCATAGCTCGGTGCCGGTA
ATTTGATCGATCAAGCTTATCTTTCGCCTCGTCGCTTCGCGCCATTCAGG
ATTTTTGCTTGGTTGAACAAATTGCTGGTACCGAACTGTGGCCTACTGTG
ACCTACTTTCAGCAAAGATGGTGCATTAGTTTGCTTCACTTGGGAAATAC
AGAGTAGCTCTATCTAGTGTTTTATATGAGATATTTGTGGTCTTAACCAG
TGACATAAATGGTGACTTTATTGTTTTAGGATACACGCACCTTGGAGGAT
GTCCTGTACGAGAAAACGTTCCCTTGTTTTGTTTGCTCAGTGGTGTTTTA
GCATTGGTGGCGTTCGTTAGTTTCTTCTTTGTGATGTTATGTGATGACGA
CTCAAGTTGCTCCAACTTCTGGCTCGGCTGTTTCGGCCTCTTCATTGTGG
CCCATTTTGGGGTCCAGTGTTGGGGCAGTTATTTGGTGTTCCGCTATTGG
CCAACATGGAATGCATATGAAGAATTTATCGTGGTGAACGATTTATGTGA
TAAAGACACTTACTTGATGTCTTTCTCCACACTAATCATCTATTGGATCC
TCACACCTTGTCTTTACTCCATTGGAAAAGCAGGCTAAAAAGAAAACGGA
GGAATTACGTAATTATGGTATAAATAATAAAACATCTTTGTGTACTTGCT
GTTCTTCAATATGAAAGAATGGAACAAAAAAAACGAACAGACCATTGAAA
TTGTTTAAAGCATGATCGAGCTCTTCCAGAAAAAAAGTCGTTTATAGGGG
GTGGAAGACATTTTCTCCAGGGGTAATGGAAAGATTGTGAAAAACCGCCA
TTTCCAGGGTCAAAACACGTGGCAAGGGATGGTGGGGAATGGCTAAAAAT
TGAAGTGTTCAGGCGCATATCATTAAAACAATATTATAATATTCTTCACC
CCATTAACAGATTTTTTCTGGAATATTCTATGAGCTTCATATCATTATTA
TCAATTTGTACAATATTGTAGCTTTTGTACAAATGATGGTCAGAACAAAA
CATATTTATTATAAGAAGGTGACCCAGCCGGCACACAACGTCAAAACAAC
ATCCAATTGACATTCATAACATCCAAATAACGTTATTTGAACGTTAAAAC
AACGTTGTTGCCAGCTGGTGAGTAAAGTAATCAATTACTAATACTAACGT
TCTTATAAATTAACCTACTCGCATAATTGACCCAGATGGCTTGTGGTATA
GATTAGCTTCTCATTCGGAATAAAAGCTATATTGGGCTTTTCCAGAAAAA
AATTTGAATATGGAAGGGGGGTGGAGGATATAACATTTTTTGAAAATTTA
CACCCCGGACACTGTGAATTTTGACTCCCTGGACAGCAGGTCTAAACCCC
CCCGGACAAGCATTAGTTGGCCGAATATCAAAATTACCTTCAAACAGAGC
AAAATTACCCTCAAACCAGCTCAAACAGCAAGTTTACCCCTTTGACAAGA
CAAATTTTGTAGATTTTTCACTACCCCCGGACACTATATCCTCCACCCCC
CCCCCCCCCNGGGGTTGAGGATATAACATTTTTTGAAAATTTACACCCCG
GACACTGTGAATTTTGACTCCCTGGACAGCAGGTCTAAACCCCCCCGGAC
AAGCATTAGTTGGCCGAATATCAAAGTTACCCTCAAACAGAGCAAAATTA
CCCTCAAACAGCATTTTTACCCCTCTGACAAGACAAATTTTGTAGATTTT
TCACTACCCCAGGACACTATATCCTCCACCCCCCATGTACGGACATTTTC
TGGAAGAGCCCATTATCAGAAAGCATAAGAAAATAGTTTATGCATTTTCT
TTTTAGTTTAAAACATTTAAAACATTCTGACGATTTTTCGTACATATCTT
GTTGGAGTCGATTCCTAATCTCTTAGAAATTGTATATTTTTTGATTTTTT
CTATAAATTGGTGAAAATTTTATAGATATTTTTGTAGCTCGAGAAAAATA
GTAATTATTTCTCAGTTAATCTTTGTATTGTTTAACCTTATAGAGGCCCC
CCAGCGGTAACTCTGATCACGATATCACGCATTTTTTGGTCTTCAATCAC
GATCACGCAAATCAGCAAAAAAAAAAAATGGACAATCACGCATCCCTTTG
AAAAAGTTCAAATTACGTATACTCAAAAATCTTTCAAATAACGATCAAGT
TTTGACCTCTCATCACGCAATCACGAAGAAAAAATTTCCAAATCACATAA
TCACGCTGCAAAAAAAGTCCCTATCACGTCATCACGAAAACCGCTTGGGG
GCCTCCTTATATATGTCAAAATTTGGGTGTTAGATAAGCAGCAATTCTCA
AAAGTCAAAGATCAAAGCTAAGATACAAAATCATCATATTTCATATGAAA
AATTACTACAAAACTATACTGTTTACTTAAATAAAGTGCAAAATAAAAAA
CAAAAACAAATAATTAGAAATAAATATTTCAACAAAACACTTATCACCTC
TTCAAGTGAAAATGTAAAGAAGAGCCAAATAAAAAAGACAATTCTATCCA
AATAATTTAAACCTAACTTAATAAATAAAAACGAATCATGTTTCTAAACA
AAGATTGGAAATAAATTCAATAGGTGTTATAAATTAGCTGAACGATGGAT
TTATCAAAATGATAAAAAATTGTCTATACAAAATCATCATATTTCATATG
AAAAATTACTACAAAACTATACTGTTTACTTAAATAAAGTGCAAAATAAA
AAACAAAAACAAATAATTAGAAATAAATATTTCAACAAAACACTTATCAC
CTCTTCAAGTGAAAATGTAAAGAAGAGCCAAATAAAAAAGACAATTCTAT
CCAAATAATTTAAACCTAACTTAATAAATAAAAACGAATCATGTTTCTAA
ACAAAGACTTTGGAAAAATTTATCAGTTCATAAAGAGTCAGGGCTCTAAA
CAACGGTCGGACATCGGACATTGTCCGACCCAAATAGCTTCATGTCCGAC
CCAAAAATCATAATTTTCAAGCTAAAGCAACCCTGATCGGACATTTTGTC
CGACCCACTTGAAATCGTTATTTCGAGCCTTGAAAGAGGAACATTATAAG
AGTTTATGCCTCCTCAAACTGAGCAGATATTTTATTCATACTGTACGCTA
TTATTTTATATTTATCTTGATGAAAAATCACTCAATGTCCTCAAATCTGA
TCATATTAAAAGTTCTATATCAATCTCAGCCATACTGTTTCGCGTCAGCA
TTCGGCTATTGCCAAGGCAAATGCCGACGAAAATTTAGCTTTTGCTAACG
TAAAAGTGCTTATTGTAATAAAATTTTAAAATTTTTTGTCGACCCAAATA
ACTCTGAATTAGAAAGGCTGCAATTTTATATCCTGAACTGATCTTCATAA
AAATGATAATTTAATGAAAATAAAGGTATCCACAGTGCAATGCAAACTGT
CCAGATTTCAAAACAGAATTATTTAATTTTTGATTCCATTTTCTTGTCCA
TTGTGAAGTGCATCCTCATCAAAGGACATAGGTAGCAAGTGTGACAAGGT
TGTTTCTTTAGTATCTCTATCTAAATTAACCAAAATTATATCAATATTTC
CAAACTCTGCCATAAATTGTCGACAGGCTCCACAAGGAGAAACCATACTG
CCATTTTTAACATCTGTCGCAATGGCAATAGCTTTAAATTTTGTGATACC
TTCACTAANATTTTTAACATCTGTCGCAATAGCAATAGCTTTAAATTTTG
TGATACCTTCACTAATAGCCTTGCAATATGCAGTTCTTTCTGCACATATT
GTTAACCCAAAACTAACATTCTCAACATTACATCCTGTGATTGTTTTACC
ACATTGTGATAAAAGCGCACATCCAACTCGAAAATTACTATATTTTGCAT
AAGCAAAATCTTTAGCTGAAATACTTGCTTCAATTAAAGCATTTTTATCT
GTTTCTCCGAGTGTCATCTTGTTGTTTTTTAATATCAAACTAAAGAAATG
AAATAAAACATCGATATGAAATATCATCTTTCATTCTTAGTAGGATACAT
GCGTTTTTTATAAGAATAGTGTTTTTCTGGCTGAGGG

Coding sequence (CDS) from alignment at sc0000073:646087..655423-

>TCONS_00007092 ID=TCONS_00007092|Name=TCONS_00007092|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at sc0000073:646087..655423- (Clytia hemisphaerica)
ATGGCAGACCCACCACCTCCTGCATACGATGAAGCAACCACTCAACCAAA
TGCTCCTCCCCCACAAGGGGTTGTCCCTTATCCCCAGCCTGGCGCTCAGT
ACCCTCCACCTGCAAGCTACCCACCACCAGGTGGTCAATACCCACCACCA
GGAGCTCAATACCCTCCACAGGGTGCTCAATACCCACCACCAGGAGCTCA
ATACCCACCACCAGGAGCTCAATACCCTCCTCCAGGAGGCCAGTACCCAC
CACCAGCTGCACAATACCCACCTGCAGGAGCCCAGTATCCTCCTCCCGGA
CAATACCCACCACCAGGACAGTATCCACCTCCTGGAGCTTATCCACCACC
AACTCAAGTTGAGATGGTTGCCTTAAATACAGGCGGTAACCCTGCACTAA
CAACGGAAGGGCCTCCTACTTACAATGCGATTGAAGGAGGAACGACAGGA
GAGGCGAAAGTAACAGAAACAACAGCTGCAGCAGAGGACTCGTCAGATAG
CGAGACATCTGTGTTTGGTGCCTTCATTGGGATGTTGGTTTTCGCAGCAA
TCCCGTGTGCTATGATTTACTTAGGATACACGCACCTTGGAGGATGTCCT
GTACGAGAAAACGTTCCCTTGTTTTGTTTGCTCAGTGGTGTTTTAGCATT
GGTGGCGTTCGTTAGTTTCTTCTTTGTGATGTTATGTGATGACGACTCAA
GTTGCTCCAACTTCTGGCTCGGCTGTTTCGGCCTCTTCATTGTGGCCCAT
TTTGGGGTCCAGTGTTGGGGCAGTTATTTGGTGTTCCGCTATTGGCCAAC
ATGGAATGCATATGAAGAATTTATCGTGGTGAACGATTTATGTGATAAAG
ACACTTACTTGATGTCTTTCTCCACACTAATCATCTATTGGATCCTCACA
CCTTGTCTTTACTCCATTGGAAAAGCAGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003963XLOC_003963Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007092-proteinTCONS_00007092-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007092-exon-sc0000073-1575043694:655379..655423TCONS_00007092-exon-sc0000073-1575043694:655379..655423Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1575043694:651940..652474TCONS_00007092-exon-sc0000073-1575043694:651940..652474Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1575043694:651083..651148TCONS_00007092-exon-sc0000073-1575043694:651083..651148Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1575043694:646513..649894TCONS_00007092-exon-sc0000073-1575043694:646513..649894Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1575043694:646087..646455TCONS_00007092-exon-sc0000073-1575043694:646087..646455Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1510915933:655379..655423TCONS_00007092-exon-sc0000073-1510915933:655379..655423Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1510915933:651940..652474TCONS_00007092-exon-sc0000073-1510915933:651940..652474Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1510915933:651083..651148TCONS_00007092-exon-sc0000073-1510915933:651083..651148Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1510915933:646513..649894TCONS_00007092-exon-sc0000073-1510915933:646513..649894Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1510915933:646087..646455TCONS_00007092-exon-sc0000073-1510915933:646087..646455Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1491911889:655379..655423TCONS_00007092-exon-sc0000073-1491911889:655379..655423Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1491911889:651940..652474TCONS_00007092-exon-sc0000073-1491911889:651940..652474Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1491911889:651083..651148TCONS_00007092-exon-sc0000073-1491911889:651083..651148Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1491911889:646513..649894TCONS_00007092-exon-sc0000073-1491911889:646513..649894Clytia hemisphaericaexon
TCONS_00007092-exon-sc0000073-1491911889:646087..646455TCONS_00007092-exon-sc0000073-1491911889:646087..646455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:646087..655423 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.03038	3.64661	1.80518	2.64442	0.347973	0.00171926	7.75936	0.33497	3.48513	8.03413	4.1518	4.56066	5.46133	4.28639	0.0738685	6.32597	3.53579	5.97094	3.76173	16.2656	5.1266	13.6285	13.8432	9.09551	7.07898e-06	0.00229113	2.73169	15.8273	6.52496	0.742978
Blast
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BLAST of TCONS_00007092 vs. Swiss-Prot (Human)
Match: CDD (Cytidine deaminase OS=Homo sapiens GN=CDA PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.240e-29
Identity = 66/144 (45.83%), Postives = 83/144 (57.64%), Query Frame = -1 
Query: 3861 KNNKMTLGETDKNALIEASISAKDFAYAKYSNFRVGCALLSQCGKTITGCNVENVSFGLTICAERTAYCKAISEGITKFKAIAIATDVKNGSMVSPCGACRQFMAEFG-NIDIILVNLDRDTKETTLSHLLPMSFDEDALHNGQ 4289
            K    TL       L+  S  AK  AY  YS+F VG ALL+Q G+   GCN+EN  + L ICAERTA  KA+SEG   F+AIAIA+D+++   +SPCGACRQ M EFG N  + +   D      T+  LLP SF  + L   Q
Sbjct:    4 KRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQD-DFISPCGACRQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDLQKTQ 146
The following BLAST results are available for this feature:
BLAST of TCONS_00007092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDD1.240e-2945.83Cytidine deaminase OS=Homo sapiens GN=CDA PE=1 SV=... [more]
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