TCONS_00007116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007116
Unique NameTCONS_00007116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007116 ID=TCONS_00007116|Name=TCONS_00007116|organism=Clytia hemisphaerica|type=transcript|length=518bp
AgactttgttaaaaaataaGCAAGAAGACACGTACTCCAGTTTTCATAAA
TCTAACAACAAAATGCCTCGTGGTAGACGATCTTCAACTAAAGGAACTAC
TCCATCTGCAAGCCAGGACACTGAAAATAAAGAGGTTACTGATGCCCCAG
CTGTTGAAACTAAGGAGAAAGCAACTGAAGTCGAACAACCAGCTCAAGTA
GAGGAGGTTTCAAAAGCCGAAGAACCAAAAACTGAAAGCCAACCAGAAAA
TGTCGAAGGGGAGACGACAGAAGAAGTTTCGGACGAGAAGGATTCAGAAG
ATAACAAACGAAAAGAATTATCACAAGAAGAAGATGCGACTACCCTCAAA
AAGTTGAAAACTGATGAAACTGTAGTCCCCGAAGAAAGCAAGGAAACTGT
CCAAGCAGCCAACTAATTGGTGATTTTTTAATTGTAGTTTTTGATCTTGT
ATTTTTtccttttgtaaatattttttcatgtaGATAGAAGAATTCAATAA
ctcaaaaatcaatttaaa
Run BLAST on NCBI

protein sequence of TCONS_00007116-protein

>TCONS_00007116-protein ID=TCONS_00007116-protein|Name=TCONS_00007116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
TLLKNKQEDTYSSFHKSNNKMPRGRRSSTKGTTPSASQDTENKEVTDAPA
VETKEKATEVEQPAQVEEVSKAEEPKTESQPENVEGETTEEVSDEKDSED
NKRKELSQEEDATTLKKLKTDETVVPEESKETVQAAN
Run BLAST on NCBI

transcript from alignment at sc0000073:435712..436229

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007116 ID=TCONS_00007116|Name=TCONS_00007116|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0000073:435712..436229 (Clytia hemisphaerica)
tttaaattgatttttgagTTATTGAATTCTTCTATCtacatgaaaaaata
tttacaaaaggaAAAAATACAAGATCAAAAACTACAATTAAAAAATCACC
AATTAGTTGGCTGCTTGGACAGTTTCCTTGCTTTCTTCGGGGACTACAGT
TTCATCAGTTTTCAACTTTTTGAGGGTAGTCGCATCTTCTTCTTGTGATA
ATTCTTTTCGTTTGTTATCTTCTGAATCCTTCTCGTCCGAAACTTCTTCT
GTCGTCTCCCCTTCGACATTTTCTGGTTGGCTTTCAGTTTTTGGTTCTTC
GGCTTTTGAAACCTCCTCTACTTGAGCTGGTTGTTCGACTTCAGTTGCTT
TCTCCTTAGTTTCAACAGCTGGGGCATCAGTAACCTCTTTATTTTCAGTG
TCCTGGCTTGCAGATGGAGTAGTTCCTTTAGTTGAAGATCGTCTACCACG
AGGCATTTTGTTGTTAGATTTATGAAAACTGGAGTACGTGTCTTCTTGCt
tattttttaacaaagtcT

Coding sequence (CDS) from alignment at sc0000073:435712..436229

>TCONS_00007116 ID=TCONS_00007116|Name=TCONS_00007116|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000073:435712..436229 (Clytia hemisphaerica)
TTAGTTGGCTGCTTGGACAGTTTCCTTGCTTTCTTCGGGGACTACAGTTT
CATCAGTTTTCAACTTTTTGAGGGTAGTCGCATCTTCTTCTTGTGATAAT
TCTTTTCGTTTGTTATCTTCTGAATCCTTCTCGTCCGAAACTTCTTCTGT
CGTCTCCCCTTCGACATTTTCTGGTTGGCTTTCAGTTTTTGGTTCTTCGG
CTTTTGAAACCTCCTCTACTTGAGCTGGTTGTTCGACTTCAGTTGCTTTC
TCCTTAGTTTCAACAGCTGGGGCATCAGTAACCTCTTTATTTTCAGTGTC
CTGGCTTGCAGATGGAGTAGTTCCTTTAGTTGAAGATCGTCTACCACGAG
GCATTTTGTTGTTAGATTTATGAAAACTGGAGTACGTGTCTTCTTGCtta
ttttttaacaaagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003984XLOC_003984Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007116-proteinTCONS_00007116-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007116-exon-sc0000073-1491911889:435712..436229TCONS_00007116-exon-sc0000073-1491911889:435712..436229Clytia hemisphaericaexon
TCONS_00007116-exon-sc0000073-1510915933:435712..436229TCONS_00007116-exon-sc0000073-1510915933:435712..436229Clytia hemisphaericaexon
TCONS_00007116-exon-sc0000073-1575043694:435712..436229TCONS_00007116-exon-sc0000073-1575043694:435712..436229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:435712..436229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.111962	0.129999	0	0	0.122352	0	0	0	0.119843	0.232645	0	0.0763597	0.713702	0	0.13993	1.37906	0.530058	0	0.255434	6.21652	3.41123	0.789866	0.598419	798.922	634.247	0.472301	0	0.254871	0.649182
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top