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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007152 ID=TCONS_00007152|Name=TCONS_00007152|organism=Clytia hemisphaerica|type=transcript|length=2768bpRun BLAST on NCBI protein sequence of TCONS_00007152-protein >TCONS_00007152-protein ID=TCONS_00007152-protein|Name=TCONS_00007152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=778bp FLSAKVKFETKIKITNTVCEMTSIEEQVKNISLKAEDIKVTIHQIVHREYRun BLAST on NCBI transcript from alignment at sc0000074:333634..359202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007152 ID=TCONS_00007152|Name=TCONS_00007152|organism=Clytia hemisphaerica|type=transcript|length=25569bp|location=Sequence derived from alignment at sc0000074:333634..359202+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000074:333634..359202+ >TCONS_00007152 ID=TCONS_00007152|Name=TCONS_00007152|organism=Clytia hemisphaerica|type=CDS|length=2337bp|location=Sequence derived from alignment at sc0000074:333634..359202+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007152 vs. Swiss-Prot (Human)
Match: ZW10 (Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3) HSP 1 Score: 409.453 bits (1051), Expect = 2.036e-128 Identity = 256/791 (32.36%), Postives = 440/791 (55.63%), Query Frame = 3
Query: 24 FETKIKITNTVCEMTSIEEQVKNISLKAEDIKVTIHQIVHREYNDLLPS-KSQHELLNLIKPLLGQVNKLDQKFENELQPKIKAATTQHKDLLDEFNKTRIVTHFLQKICLCHS--ELILCKSCESNQFVKCATHLQTVKTELESLNPSS--EIKIFKAVRNEYINQQTRVVNTINDVWLSILNWNMSPNLSWDSMNGHLKTSLKI-------DMKTLDNSIQMADVLQAMDILQSLHPKLKMFSQKLHTYLLKPLIKFQALTPVMEEKENCFTLKLTKKKIH------SDKFTKATANVLLYKKVLDVIRFVKNSLFKNVDTENSTKHLEPMS-TIGTFIWKELSESIIKDHLSLSVPSSNSQMEKYESTIGETLQFENDLRSEGFIPDDEDVLSKYIKDANVHFANKVCQDILSEARYIILTEMHNTIEVGVMNDRAAIAIPTTNTPNKEGEILNKKIKNI----LMGIEAVEDDFLQINTFAFPSCHISDCVQKLMDFVYQTMIKATESPYPMASQMVYSCRDIFDLFVNVVPTYHQANL-KLPQLAALHFNNCMYLAHHCITLGHQFQNSLPGQLNSSSTTFVDLVPVLRKCGIDCFLEQLRSQQKEILNLLEPCEQFTQVVTINGSEIVKRSFNQIIHHLTRVAKQWEKVLPNNIFKQSLSVLINTALEYCLSAVLKMEDISADEAGQMHTLFTILIDRVPEI---VRDCTGCKGEDFVLKDLIRSYSKFDFVIKILEASLQEIVDMWHGGEGSLATCMSENEARTMIRALFQNTERRSQALAKIK 2315
F T++ + E + ++ ++ + E+IK + ++ ++Y++ LPS +S L+ + L ++ L + E+E++ + +T + DL + + +V L+++ + E C E ++V A L+ + L+ L ++KI K++ E Q+ ++ + + W ++ W P+ S+ +L+T L + + KT I + VL A +L LH KLK F Q L Y+L+PL +L V+E + N ++ + S+ FTK + VL+V++ L + D EN P++ +G IW++LSE +IK+ L S+P+++S++++YE I T +FEN L+ F+ D L KY ++ N HFANK CQD++ AR ++ +E+HNT+++ + D + I +P TP+++ ++ +K+ N +M +E ++ L ++F+ P+C IS+ V+KLM+ YQT+++AT S A Q+ YS R+IF LF +VVPTYH+ NL KLPQLAA+H NNCMY+AHH +TLGHQF+ L L + TFVDLVP R+ G +CFL Q+R+Q+ E+L L F+ + ++ Q++H L R+ W+ VLP NI+ +++ L+NTA+ + + +EDIS ++ ++++L ++D P++ + + + K + + + F ++ +L+ASLQEI D W G+G LA S +E + +IRALFQNTERR+ ALAKIK
Sbjct: 4 FVTEVLAHSGRLEKEDLGTRISRLTRRVEEIKGEVCNMISKKYSEFLPSMQSAQGLITQVDKLSEDIDLLKSRIESEVRRDLHVSTGEFTDLKQQLERDSVVLSLLKQLQEFSTAIEEYNCALTE-KKYVTGAQRLEEAQKCLKLLKSRKCFDLKILKSLSMELTIQKQNILYHLGEEWQKLIVWKFPPSKDTSSLESYLQTELHLYTEQSHKEEKTPMPPI--SSVLLAFSVLGELHSKLKSFGQMLLKYILRPLASCPSLHAVIESQPNIVIIRFESIMTNLEYPSPSEVFTK-------IRLVLEVLQKQLLDLPLDTDLENEKTSTVPLAEMLGDMIWEDLSECLIKNCLVYSIPTNSSKLQQYEEIIQSTEEFENALKEMRFLKGDTTDLLKYARNINSHFANKKCQDVIVAARNLMTSEIHNTVKI--IPD-SKINVPELPTPDEDNKLEVQKVSNTQYHEVMNLEP--ENTLDQHSFSLPTCRISESVKKLMELAYQTLLEATTSSDQCAVQLFYSVRNIFHLFHDVVPTYHKENLQKLPQLAAIHHNNCMYIAHHLLTLGHQFRLRLAPILCDGTATFVDLVPGFRRLGTECFLAQMRAQKGELLERLSSARNFSNMDDEENYSAASKAVRQVLHQLKRLGIVWQDVLPVNIYCKAMGTLLNTAISEVIGKITALEDISTEDGDRLYSLCKTVMDEGPQVFAPLSEESKNKKYQEEVPVYVPKWMPFKELMMMLQASLQEIGDRWADGKGPLAAAFSSSEVKALIRALFQNTERRAAALAKIK 779 The following BLAST results are available for this feature:
BLAST of TCONS_00007152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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